Wall clock time and date at job start Wed Apr 1 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81396 * 109.47098 * 2 1 4 4 O 1.42102 * 110.54318 * 291.62440 * 3 2 1 5 5 O 1.42107 * 110.54578 * 68.37502 * 3 2 1 6 6 N 1.65601 * 104.44997 * 179.97438 * 3 2 1 7 7 C 1.46505 * 119.99633 * 65.00347 * 6 3 2 8 8 H 1.08997 * 109.46917 * 334.99375 * 7 6 3 9 9 C 1.52998 * 109.47249 * 94.99881 * 7 6 3 10 10 C 1.50695 * 109.46721 * 214.99965 * 7 6 3 11 11 O 1.21283 * 120.00142 * 333.05138 * 10 7 6 12 12 N 1.34777 * 120.00356 * 153.05821 * 10 7 6 13 13 C 1.47431 * 125.64077 * 4.59797 * 12 10 7 14 14 C 1.55133 * 104.71868 * 155.81826 * 13 12 10 15 15 H 1.08998 * 110.90465 * 155.26900 * 14 13 12 16 16 N 1.46498 * 111.22495 * 279.17603 * 14 13 12 17 17 C 1.36940 * 119.99546 * 267.20672 * 16 14 13 18 18 H 1.08001 * 120.00344 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99821 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99951 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46990 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47189 * 119.99491 * 21 19 17 24 24 H 1.48495 * 109.47614 * 240.00024 * 21 19 17 25 25 C 1.55161 * 101.48660 * 37.29194 * 14 13 12 26 26 C 1.52992 * 110.72047 * 205.96573 * 25 14 13 27 27 C 1.53005 * 110.86986 * 82.76737 * 25 14 13 28 28 C 1.47018 * 125.65458 * 184.90463 * 12 10 7 29 29 H 1.09002 * 109.46651 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46761 * 299.99903 * 1 2 3 31 31 H 1.08995 * 109.46863 * 60.00473 * 1 2 3 32 32 H 1.09003 * 109.46666 * 119.99840 * 2 1 3 33 33 H 1.08995 * 109.47015 * 239.99485 * 2 1 3 34 34 H 0.96998 * 120.00073 * 244.99442 * 6 3 2 35 35 H 1.08998 * 109.47136 * 54.72080 * 9 7 6 36 36 H 1.08998 * 109.47102 * 174.72748 * 9 7 6 37 37 H 1.08999 * 109.47025 * 294.72280 * 9 7 6 38 38 H 1.09005 * 110.36624 * 274.74194 * 13 12 10 39 39 H 1.08992 * 110.36822 * 37.07198 * 13 12 10 40 40 H 0.96991 * 120.00179 * 87.20604 * 16 14 13 41 41 H 0.97003 * 120.00018 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47211 * 174.97319 * 26 25 14 43 43 H 1.08999 * 109.47713 * 294.98276 * 26 25 14 44 44 H 1.09007 * 109.47082 * 54.98190 * 26 25 14 45 45 H 1.09005 * 109.46848 * 304.93365 * 27 25 14 46 46 H 1.09001 * 109.46995 * 64.93612 * 27 25 14 47 47 H 1.09006 * 109.46930 * 184.93834 * 27 25 14 48 48 H 1.08997 * 109.88182 * 300.44439 * 28 12 10 49 49 H 1.08998 * 109.87984 * 61.45025 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 -1.2370 5 8 1.8386 2.3439 1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4676 0.9669 -1.1489 8 1 3.7819 0.3009 -1.6727 9 6 4.9304 2.0728 -2.0995 10 6 5.6624 0.1829 -0.6707 11 8 6.2140 0.4895 0.3649 12 7 6.1181 -0.8591 -1.3940 13 6 5.6065 -1.2798 -2.7111 14 6 6.7863 -2.0451 -3.3662 15 1 6.4244 -2.7537 -4.1111 16 7 7.7576 -1.1193 -3.9542 17 6 7.6531 -0.7637 -5.2725 18 1 6.8549 -1.1659 -5.8787 19 6 8.5737 0.1130 -5.8299 20 7 9.5468 0.6029 -5.0912 21 14 8.4317 0.5977 -7.6283 22 1 7.2600 -0.0847 -8.2338 23 1 8.2553 2.0685 -7.7321 24 1 9.6663 0.1951 -8.3485 25 6 7.3920 -2.7841 -2.1437 26 6 8.8767 -3.0765 -2.3690 27 6 6.6258 -4.0763 -1.8534 28 6 7.2033 -1.7682 -0.9974 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 4.2983 1.8767 0.7622 35 1 5.5407 2.7909 -1.5517 36 1 5.5192 1.6359 -2.9059 37 1 4.0608 2.5796 -2.5179 38 1 4.7450 -1.9369 -2.5913 39 1 5.3402 -0.4092 -3.3104 40 1 8.4746 -0.7584 -3.4099 41 1 10.1899 1.2158 -5.4806 42 1 9.3020 -3.5140 -1.4659 43 1 8.9877 -3.7750 -3.1984 44 1 9.3983 -2.1484 -2.6034 45 1 5.5671 -3.8501 -1.7258 46 1 6.7518 -4.7682 -2.6862 47 1 7.0127 -4.5310 -0.9414 48 1 8.1235 -1.2037 -0.8472 49 1 6.9337 -2.2886 -0.0785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755758674.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:40 Heat of formation + Delta-G solvation = -122.466158 kcal Electronic energy + Delta-G solvation = -30688.791086 eV Core-core repulsion = 26584.244632 eV Total energy + Delta-G solvation = -4104.546454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.49151 -39.56621 -38.23769 -37.09324 -36.49450 -35.67135 -34.60863 -34.04150 -32.54001 -31.03836 -29.47909 -27.92452 -27.70736 -25.73608 -24.96934 -24.67132 -22.95727 -20.60475 -20.41742 -20.14060 -19.12188 -19.00142 -17.79765 -17.58630 -17.30187 -17.07678 -16.53710 -16.42764 -15.80988 -15.52163 -15.43333 -15.07940 -14.94513 -14.68785 -14.41624 -14.13867 -14.07652 -13.73016 -13.57934 -13.43461 -13.37482 -13.26627 -13.20793 -13.14202 -13.02091 -12.87425 -12.78318 -12.73772 -12.66632 -12.57013 -12.38186 -12.07081 -11.99686 -11.77660 -11.71957 -11.41356 -11.25225 -11.06247 -10.87776 -10.53436 -9.65889 -8.91087 -7.88876 -5.16132 -0.79764 1.39319 1.50587 1.52594 1.58487 1.60625 2.08406 2.60036 2.76644 3.16722 3.28382 3.43478 3.59621 3.69247 3.72313 3.88944 3.89744 3.91690 4.02364 4.12508 4.20260 4.38999 4.39894 4.51013 4.65369 4.71120 4.73236 4.76117 4.81842 4.84302 4.86564 4.93822 4.95041 5.06425 5.13119 5.13931 5.17306 5.20968 5.37230 5.38135 5.48351 5.59404 5.66411 5.84751 6.32099 6.53225 7.05163 7.40091 8.15963 8.37086 9.34468 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.003529 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.701447 B = 7932.438965 C = 9139.123571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.611 4.611 3 S 2.611 3.389 4 O -0.982 6.982 5 O -0.991 6.991 6 N -1.105 6.105 7 C 0.149 3.851 8 H 0.135 0.865 9 C -0.165 4.165 10 C 0.521 3.479 11 O -0.578 6.578 12 N -0.598 5.598 13 C 0.062 3.938 14 C 0.166 3.834 15 H 0.088 0.912 16 N -0.720 5.720 17 C -0.227 4.227 18 H 0.087 0.913 19 C -0.072 4.072 20 N -0.969 5.969 21 Si 0.961 3.039 22 H -0.259 1.259 23 H -0.304 1.304 24 H -0.302 1.302 25 C -0.078 4.078 26 C -0.122 4.122 27 C -0.124 4.124 28 C 0.121 3.879 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.423 0.577 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.372 0.628 41 H 0.246 0.754 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.035 0.965 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.077 -10.101 9.401 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.744 4.744 3 S 2.707 3.293 4 O -0.972 6.972 5 O -0.982 6.982 6 N -0.864 5.864 7 C 0.037 3.963 8 H 0.153 0.847 9 C -0.224 4.224 10 C 0.308 3.692 11 O -0.458 6.458 12 N -0.330 5.330 13 C -0.063 4.063 14 C 0.056 3.944 15 H 0.106 0.894 16 N -0.359 5.359 17 C -0.359 4.359 18 H 0.104 0.896 19 C -0.264 4.264 20 N -0.621 5.621 21 Si 0.792 3.208 22 H -0.183 1.183 23 H -0.232 1.232 24 H -0.230 1.230 25 C -0.080 4.080 26 C -0.180 4.180 27 C -0.181 4.181 28 C -0.002 4.002 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.259 0.741 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.091 0.909 40 H 0.205 0.795 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.053 0.947 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.444 -9.103 9.625 21.904 hybrid contribution 1.522 0.655 -0.477 1.725 sum -15.922 -8.448 9.148 20.213 Atomic orbital electron populations 1.21697 0.89479 1.06740 1.03831 1.30339 1.07974 1.21948 1.14188 1.04987 0.72161 0.79049 0.73093 1.93580 1.83349 1.74130 1.46118 1.93562 1.83158 1.75266 1.46219 1.55503 1.25951 1.77463 1.27453 1.20572 0.93705 0.95095 0.86892 0.84734 1.22203 1.03162 0.98246 0.98826 1.20629 0.85804 0.79407 0.83369 1.90648 1.60454 1.68219 1.26519 1.48395 1.35618 1.28411 1.20586 1.23632 0.99368 1.00899 0.82367 1.21707 0.88770 0.90731 0.93212 0.89397 1.42552 1.31921 1.52825 1.08563 1.19690 1.08736 1.19732 0.87761 0.89560 1.25416 0.98312 1.01443 1.01259 1.69831 1.18547 1.37080 1.36601 0.85245 0.77277 0.76950 0.81326 1.18344 1.23165 1.22957 1.21896 0.96873 0.95498 0.93700 1.21571 0.94291 1.00872 1.01280 1.21726 0.99957 0.94053 1.02407 1.22037 0.89394 0.90638 0.98124 0.87534 0.90938 0.90557 0.82782 0.82471 0.74130 0.92736 0.91363 0.89131 0.87425 0.90861 0.79512 0.94534 0.91698 0.92349 0.94951 0.91076 0.91342 0.91391 0.94670 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.92 71.98 0.71 -0.77 16 2 C -0.61 -6.42 6.68 71.98 0.48 -5.93 16 3 S 2.61 53.09 5.38 -56.49 -0.30 52.79 16 4 O -0.98 -25.71 17.21 -127.65 -2.20 -27.91 16 5 O -0.99 -26.83 18.08 -127.65 -2.31 -29.13 16 6 N -1.11 -25.20 5.31 -172.52 -0.92 -26.12 16 7 C 0.15 3.65 2.39 44.24 0.11 3.76 16 8 H 0.14 2.24 6.51 -2.39 -0.02 2.22 16 9 C -0.17 -4.78 9.41 71.98 0.68 -4.10 16 10 C 0.52 15.94 7.04 87.66 0.62 16.55 16 11 O -0.58 -21.58 16.47 -3.04 -0.05 -21.63 16 12 N -0.60 -17.13 3.32 -811.36 -2.70 -19.83 16 13 C 0.06 1.58 5.66 86.93 0.49 2.08 16 14 C 0.17 5.09 2.96 46.46 0.14 5.23 16 15 H 0.09 2.51 7.99 -2.39 -0.02 2.49 16 16 N -0.72 -31.24 4.57 -316.00 -1.44 -32.69 16 17 C -0.23 -11.12 9.96 84.03 0.84 -10.28 16 18 H 0.09 3.93 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 20 N -0.97 -57.19 13.06 21.65 0.28 -56.91 16 21 Si 0.96 43.89 29.55 68.60 2.03 45.91 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 25 C -0.08 -2.00 0.80 -50.99 -0.04 -2.04 16 26 C -0.12 -3.57 8.15 71.98 0.59 -2.98 16 27 C -0.12 -2.14 8.44 71.98 0.61 -1.53 16 28 C 0.12 3.47 6.04 86.73 0.52 3.99 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.16 0.94 7.44 -2.39 -0.02 0.93 16 34 H 0.42 10.35 8.09 -96.75 -0.78 9.56 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.20 7.05 -2.39 -0.02 2.18 16 37 H 0.09 2.45 7.53 -2.39 -0.02 2.43 16 38 H 0.11 1.77 7.71 -2.38 -0.02 1.75 16 39 H 0.07 2.08 6.60 -2.39 -0.02 2.07 16 40 H 0.37 18.52 6.32 -92.72 -0.59 17.93 16 41 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.03 1.20 6.34 -2.38 -0.02 1.19 16 45 H 0.07 1.01 7.44 -2.38 -0.02 0.99 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.03 1.24 7.82 -2.39 -0.02 1.22 16 49 H 0.08 1.97 7.85 -2.39 -0.02 1.95 16 Total: -1.00 -75.84 401.34 -1.81 -77.65 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.41 Total: 37.30 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.21 Total: 0.57 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -4.78 Total: -135.54 kcal Atomic # 8 Polarization: -74.12 SS G_CDS: -4.56 Total: -78.67 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 53.09 SS G_CDS: -0.30 Total: 52.79 kcal Total: -75.84 -1.81 -77.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755758674.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.820 kcal (2) G-P(sol) polarization free energy of solvation -75.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds