Wall clock time and date at job start Wed Apr 1 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81405 * 109.46895 * 2 1 4 4 O 1.42100 * 110.54240 * 68.37931 * 3 2 1 5 5 O 1.42099 * 110.54533 * 291.62347 * 3 2 1 6 6 N 1.65599 * 104.44905 * 180.02562 * 3 2 1 7 7 C 1.46499 * 120.00161 * 270.00029 * 6 3 2 8 8 C 1.46503 * 120.00095 * 89.99503 * 6 3 2 9 9 C 1.50694 * 109.47567 * 265.00378 * 8 6 3 10 10 O 1.21275 * 119.99961 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99872 * 179.97438 * 9 8 6 12 12 C 1.47018 * 125.64981 * 0.02817 * 11 9 8 13 13 C 1.54325 * 107.40412 * 178.82520 * 12 11 9 14 14 H 1.09000 * 110.72188 * 96.24097 * 13 12 11 15 15 N 1.46495 * 110.72250 * 219.52320 * 13 12 11 16 16 C 1.36934 * 119.99717 * 273.54393 * 15 13 12 17 17 H 1.08002 * 120.00471 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99836 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99854 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00106 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46848 * 90.00384 * 20 18 16 22 22 H 1.48497 * 109.47156 * 210.00032 * 20 18 16 23 23 H 1.48497 * 109.47207 * 330.00610 * 20 18 16 24 24 C 1.55405 * 102.82616 * 337.97548 * 13 12 11 25 25 C 1.53000 * 110.89394 * 277.26684 * 24 13 12 26 26 C 1.53000 * 111.03706 * 153.46985 * 24 13 12 27 27 C 1.47426 * 125.64500 * 179.97438 * 11 9 8 28 28 H 1.08996 * 109.47296 * 59.99910 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46857 * 299.99621 * 1 2 3 31 31 H 1.08992 * 109.47069 * 240.00415 * 2 1 3 32 32 H 1.08996 * 109.47296 * 120.00090 * 2 1 3 33 33 H 1.08998 * 109.47391 * 269.99985 * 7 6 3 34 34 H 1.09001 * 109.47029 * 30.00162 * 7 6 3 35 35 H 1.09008 * 109.47112 * 149.99705 * 7 6 3 36 36 H 1.08997 * 109.46815 * 144.99747 * 8 6 3 37 37 H 1.09007 * 109.46543 * 25.00687 * 8 6 3 38 38 H 1.09002 * 109.88241 * 298.32048 * 12 11 9 39 39 H 1.09000 * 109.88049 * 59.33177 * 12 11 9 40 40 H 0.96997 * 120.00433 * 93.54551 * 15 13 12 41 41 H 0.96999 * 119.99699 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.47124 * 173.68399 * 25 24 13 43 43 H 1.09000 * 109.46711 * 293.68751 * 25 24 13 44 44 H 1.08996 * 109.47179 * 53.68650 * 25 24 13 45 45 H 1.08997 * 109.47294 * 306.22850 * 26 24 13 46 46 H 1.08997 * 109.47279 * 66.23530 * 26 24 13 47 47 H 1.09006 * 109.47100 * 186.23324 * 26 24 13 48 48 H 1.08999 * 110.36956 * 323.01018 * 27 11 9 49 49 H 1.09001 * 110.36709 * 85.22211 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8386 2.3439 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5145 1.5011 1.2677 8 6 4.5134 1.5014 -1.2698 9 6 4.7464 0.0602 -1.6432 10 8 4.3436 -0.8263 -0.9203 11 7 5.4026 -0.2436 -2.7806 12 6 5.9427 0.7271 -3.7436 13 6 6.6326 -0.0735 -4.8683 14 1 5.9602 -0.2055 -5.7160 15 7 7.8733 0.5837 -5.2863 16 6 7.8405 1.5636 -6.2422 17 1 6.9001 1.8517 -6.6883 18 6 9.0163 2.1860 -6.6387 19 7 8.9847 3.1283 -7.5572 20 14 10.6430 1.6873 -5.8678 21 1 11.2500 0.5879 -6.6604 22 1 11.5624 2.8534 -5.8539 23 1 10.4100 1.2240 -4.4763 24 6 6.9317 -1.4378 -4.1871 25 6 8.2228 -1.3679 -3.3692 26 6 6.9998 -2.5643 -5.2202 27 6 5.6985 -1.6044 -3.2645 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.7856 2.5089 1.5824 34 1 3.8831 1.0407 2.0275 35 1 5.4183 0.9059 1.1368 36 1 5.4722 2.0089 -1.1638 37 1 3.9285 1.9889 -2.0498 38 1 5.1330 1.3272 -4.1588 39 1 6.6682 1.3740 -3.2505 40 1 8.7180 0.3248 -4.8860 41 1 9.8064 3.5629 -7.8346 42 1 8.3515 -2.2967 -2.8134 43 1 9.0702 -1.2251 -4.0396 44 1 8.1663 -0.5321 -2.6718 45 1 6.0880 -2.5653 -5.8174 46 1 7.8603 -2.4089 -5.8710 47 1 7.0997 -3.5214 -4.7081 48 1 5.9365 -2.2612 -2.4278 49 1 4.8525 -1.9993 -3.8270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755763851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:30 Heat of formation + Delta-G solvation = -80.601288 kcal Electronic energy + Delta-G solvation = -30460.630083 eV Core-core repulsion = 26357.899026 eV Total energy + Delta-G solvation = -4102.731057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.30802 -38.42430 -37.33246 -36.23050 -35.81016 -34.34903 -33.37795 -33.31754 -31.21792 -29.30369 -28.02903 -27.25969 -26.54610 -25.02676 -24.04303 -23.76821 -21.42247 -19.65299 -19.13931 -18.74711 -18.04718 -17.70848 -17.15482 -16.60401 -16.45626 -16.02184 -15.50311 -14.92644 -14.79762 -14.49553 -14.20797 -14.03436 -13.93362 -13.62194 -13.49375 -13.25553 -13.07865 -12.80373 -12.72805 -12.63311 -12.50945 -12.35877 -12.29684 -12.26155 -11.82919 -11.80566 -11.79126 -11.64105 -11.50968 -11.42303 -11.09075 -10.89264 -10.76175 -10.65251 -10.41305 -10.25219 -10.02132 -9.67535 -9.20187 -9.05981 -8.52308 -7.46451 -5.90145 -3.28377 0.05364 2.28502 2.54673 3.05175 3.25826 3.28655 3.36299 3.62509 3.93244 4.29558 4.39096 4.46058 4.52044 4.56127 4.75673 4.85556 4.91271 4.93594 5.04461 5.20938 5.28344 5.29762 5.38758 5.39475 5.50761 5.53972 5.55166 5.57165 5.60876 5.62639 5.68588 5.73074 5.78759 5.89075 6.04246 6.07424 6.10698 6.14210 6.23749 6.37178 6.39019 6.45169 6.65206 7.56514 7.84517 8.09806 8.28606 9.05212 9.77074 9.95033 11.27455 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.003008 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.384582 B = 9307.217696 C =10001.763711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.621 4.621 3 S 2.608 3.392 4 O -0.955 6.955 5 O -0.954 6.954 6 N -0.983 5.983 7 C 0.100 3.900 8 C 0.098 3.902 9 C 0.503 3.497 10 O -0.550 6.550 11 N -0.607 5.607 12 C 0.066 3.934 13 C 0.188 3.812 14 H 0.076 0.924 15 N -0.735 5.735 16 C -0.254 4.254 17 H 0.093 0.907 18 C 0.012 3.988 19 N -0.927 5.927 20 Si 0.879 3.121 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.277 1.277 24 C -0.091 4.091 25 C -0.133 4.133 26 C -0.130 4.130 27 C 0.119 3.881 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.366 0.634 41 H 0.261 0.739 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.051 0.949 48 H 0.074 0.926 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 -9.444 15.357 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.751 4.751 3 S 2.701 3.299 4 O -0.945 6.945 5 O -0.944 6.944 6 N -0.819 5.819 7 C -0.046 4.046 8 C -0.032 4.032 9 C 0.290 3.710 10 O -0.429 6.429 11 N -0.340 5.340 12 C -0.059 4.059 13 C 0.076 3.924 14 H 0.094 0.906 15 N -0.378 5.378 16 C -0.384 4.384 17 H 0.111 0.889 18 C -0.185 4.185 19 N -0.574 5.574 20 Si 0.709 3.291 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.092 4.092 25 C -0.191 4.191 26 C -0.187 4.187 27 C -0.004 4.004 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.202 0.798 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.503 -8.862 15.621 21.327 hybrid contribution 1.581 -0.956 0.420 1.895 sum -9.922 -9.818 16.041 21.264 Atomic orbital electron populations 1.21526 0.90926 1.04965 1.03150 1.30443 1.06231 1.25883 1.12525 1.05229 0.72761 0.77644 0.74276 1.93588 1.82971 1.72835 1.45121 1.93594 1.82881 1.72902 1.45041 1.57093 1.24727 1.89057 1.10987 1.21454 0.97810 1.02138 0.83164 1.21295 1.01115 0.94054 0.86691 1.20967 0.78067 0.92016 0.79974 1.90646 1.51807 1.49478 1.50940 1.48541 1.54991 1.09028 1.21483 1.23386 0.98568 0.92736 0.91248 1.21223 0.89367 0.88432 0.93403 0.90601 1.42817 1.03071 1.44701 1.47257 1.19076 0.95754 1.10751 1.12792 0.88904 1.24667 0.97243 0.98150 0.98439 1.69693 1.27224 1.27515 1.32944 0.86656 0.85365 0.77996 0.79081 1.20916 1.21571 1.20290 1.22079 0.94429 0.97184 0.95541 1.21668 0.96592 1.01347 0.99461 1.21649 1.02797 0.96331 0.97947 1.22294 0.96716 0.84078 0.97320 0.91068 0.90049 0.91200 0.84541 0.85006 0.92008 0.91086 0.90877 0.86573 0.85605 0.91212 0.90568 0.79820 0.92855 0.92880 0.91982 0.92477 0.92332 0.91512 0.92986 0.90728 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.92 37.16 0.37 -0.81 16 2 C -0.62 -5.87 6.43 37.16 0.24 -5.63 16 3 S 2.61 30.45 5.38 -107.50 -0.58 29.88 16 4 O -0.95 -12.98 17.09 -57.54 -0.98 -13.97 16 5 O -0.95 -13.72 16.53 -57.54 -0.95 -14.67 16 6 N -0.98 -10.86 2.61 -123.05 -0.32 -11.18 16 7 C 0.10 0.91 10.20 59.85 0.61 1.52 16 8 C 0.10 1.12 5.31 -5.19 -0.03 1.09 16 9 C 0.50 6.63 7.91 -10.99 -0.09 6.55 16 10 O -0.55 -7.99 15.27 5.56 0.08 -7.90 16 11 N -0.61 -8.12 3.31 -170.52 -0.57 -8.68 16 12 C 0.07 0.98 5.85 -3.07 -0.02 0.96 16 13 C 0.19 3.07 2.86 -65.96 -0.19 2.88 16 14 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 15 N -0.74 -15.17 4.88 -51.52 -0.25 -15.42 16 16 C -0.25 -6.48 10.46 -15.06 -0.16 -6.64 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 18 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 19 N -0.93 -27.53 13.97 55.49 0.78 -26.76 16 20 Si 0.88 20.57 27.74 -169.99 -4.71 15.86 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.01 6.52 56.52 0.37 -5.64 16 24 C -0.09 -1.22 0.88 -152.23 -0.13 -1.35 16 25 C -0.13 -1.81 7.72 37.16 0.29 -1.52 16 26 C -0.13 -1.56 8.67 37.16 0.32 -1.24 16 27 C 0.12 1.50 5.84 -2.53 -0.01 1.48 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.39 7.22 -51.93 -0.37 1.02 16 32 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 35 H 0.07 0.63 8.07 -51.92 -0.42 0.21 16 36 H 0.12 1.15 8.11 -51.93 -0.42 0.73 16 37 H 0.13 1.45 6.81 -51.93 -0.35 1.10 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 40 H 0.37 7.50 3.29 -40.82 -0.13 7.37 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.91 6.74 -51.93 -0.35 0.56 16 44 H 0.06 0.81 7.81 -51.93 -0.41 0.41 16 45 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 49 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -33.00 400.67 -8.71 -41.70 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.34 Total: 7.58 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 1.10 Total: -2.48 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.36 Total: -62.04 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.85 Total: -36.54 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.71 Total: 15.86 kcal Atomic # 16 Polarization: 30.45 SS G_CDS: -0.58 Total: 29.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.00 -8.71 -41.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755763851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.898 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds