Wall clock time and date at job start Wed Apr 1 2020 04:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 110.53986 * 2 1 4 4 O 1.42098 * 110.54120 * 223.25346 * 2 1 3 5 5 N 1.65597 * 104.44980 * 111.62461 * 2 1 3 6 6 C 1.46505 * 119.99951 * 65.00204 * 5 2 1 7 7 C 1.53001 * 109.46996 * 164.99845 * 6 5 2 8 8 C 1.52998 * 109.46809 * 174.91439 * 7 6 5 9 9 H 1.09004 * 109.45744 * 305.08347 * 8 7 6 10 10 C 1.53043 * 109.46477 * 65.05516 * 8 7 6 11 11 C 1.53116 * 109.28222 * 179.19434 * 10 8 7 12 12 C 1.53115 * 109.15959 * 302.34467 * 11 10 8 13 13 C 1.53041 * 109.27880 * 57.65489 * 12 11 10 14 14 N 1.46844 * 109.46475 * 185.10800 * 8 7 6 15 15 C 1.46901 * 111.00126 * 54.14175 * 14 8 7 16 16 C 1.50701 * 109.46630 * 63.13856 * 15 14 8 17 17 O 1.21282 * 120.00039 * 3.96477 * 16 15 14 18 18 N 1.34780 * 119.99767 * 183.96467 * 16 15 14 19 19 C 1.46502 * 119.99595 * 180.02562 * 18 16 15 20 20 C 1.50708 * 109.46765 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99891 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99707 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99807 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00119 * 0.02562 * 22 20 19 25 25 H 1.48490 * 109.47469 * 89.99824 * 24 22 20 26 26 H 1.48506 * 109.46748 * 209.99969 * 24 22 20 27 27 H 1.48505 * 109.47204 * 329.99569 * 24 22 20 28 28 H 1.09011 * 109.47021 * 308.37268 * 1 2 3 29 29 H 1.08997 * 109.47112 * 68.37110 * 1 2 3 30 30 H 1.08994 * 109.47376 * 188.37973 * 1 2 3 31 31 H 0.97002 * 120.00001 * 244.99644 * 5 2 1 32 32 H 1.08996 * 109.47155 * 44.99800 * 6 5 2 33 33 H 1.09003 * 109.46613 * 284.99763 * 6 5 2 34 34 H 1.08997 * 109.47151 * 54.92019 * 7 6 5 35 35 H 1.09000 * 109.46948 * 294.91401 * 7 6 5 36 36 H 1.09001 * 109.49885 * 299.13444 * 10 8 7 37 37 H 1.09003 * 109.50350 * 59.20928 * 10 8 7 38 38 H 1.09002 * 109.52252 * 62.24779 * 11 10 8 39 39 H 1.08994 * 109.52474 * 182.43893 * 11 10 8 40 40 H 1.09000 * 109.50550 * 177.59525 * 12 11 10 41 41 H 1.08997 * 109.50527 * 297.67491 * 12 11 10 42 42 H 1.08995 * 109.46318 * 180.80612 * 13 12 11 43 43 H 1.09000 * 109.46292 * 60.83462 * 13 12 11 44 44 H 1.08993 * 109.47238 * 183.13994 * 15 14 8 45 45 H 1.09005 * 109.47088 * 303.14565 * 15 14 8 46 46 H 0.96992 * 119.99809 * 359.97438 * 18 16 15 47 47 H 1.09006 * 109.47051 * 299.99781 * 19 18 16 48 48 H 1.08996 * 109.47660 * 60.00107 * 19 18 16 49 49 H 0.96998 * 120.00372 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8908 -1.9707 1.8507 7 6 2.6876 -2.3831 3.0901 8 6 2.2442 -3.7762 3.5411 9 1 1.1651 -3.7817 3.6948 10 6 2.6112 -4.8013 2.4655 11 6 2.1838 -6.1963 2.9298 12 6 2.8632 -6.5116 4.2653 13 6 2.4889 -5.4370 5.2887 14 7 2.9193 -4.1214 4.7986 15 6 2.7013 -3.0837 5.8153 16 6 1.2318 -2.9978 6.1381 17 8 0.4529 -3.7767 5.6306 18 7 0.7831 -2.0554 6.9908 19 6 -0.6454 -1.9723 7.3050 20 6 -0.8815 -0.8427 8.2744 21 1 -0.0506 -0.2467 8.6218 22 6 -2.1584 -0.5702 8.7175 23 7 -2.3645 0.4152 9.5637 24 14 -3.5954 -1.6015 8.1170 25 1 -3.7921 -2.7558 9.0301 26 1 -4.8264 -0.7710 8.0967 27 1 -3.3103 -2.0975 6.7465 28 1 -0.3634 0.6380 0.8058 29 1 -0.3633 0.3788 -0.9553 30 1 -0.3634 -1.0166 0.1498 31 1 2.6921 -0.0236 2.1255 32 1 2.1394 -2.6334 1.0219 33 1 0.8243 -2.0405 2.0646 34 1 2.5081 -1.6673 3.8923 35 1 3.7506 -2.4002 2.8495 36 1 2.0975 -4.5537 1.5366 37 1 3.6886 -4.7861 2.3008 38 1 1.1015 -6.2223 3.0567 39 1 2.4821 -6.9351 2.1860 40 1 2.5297 -7.4860 4.6222 41 1 3.9446 -6.5245 4.1293 42 1 2.9826 -5.6507 6.2367 43 1 1.4087 -5.4347 5.4343 44 1 3.2574 -3.3368 6.7178 45 1 3.0461 -2.1227 5.4334 46 1 1.4062 -1.4327 7.3969 47 1 -1.2086 -1.7891 6.3900 48 1 -0.9742 -2.9102 7.7525 49 1 -3.2627 0.6067 9.8758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052134431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:09 Heat of formation + Delta-G solvation = -110.097811 kcal Electronic energy + Delta-G solvation = -29879.085457 eV Core-core repulsion = 25775.075334 eV Total energy + Delta-G solvation = -4104.010123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.36419 -38.11520 -37.34341 -36.24018 -36.01047 -34.45921 -33.50391 -32.45098 -32.27455 -29.75135 -28.86692 -28.12336 -26.57805 -24.10154 -23.19073 -21.95535 -21.13610 -20.08991 -19.79581 -19.52342 -17.85091 -17.29223 -16.85427 -16.51158 -16.06398 -15.96257 -15.64240 -15.31350 -14.99197 -14.73193 -14.58256 -14.29277 -14.20068 -13.64362 -13.56212 -13.45772 -13.37191 -12.98850 -12.79942 -12.58412 -12.41215 -12.38030 -12.33045 -12.23657 -11.94664 -11.70504 -11.60940 -11.53133 -11.26656 -11.10866 -10.93054 -10.69887 -10.61477 -10.33975 -10.20135 -10.07581 -9.95993 -9.69532 -9.57985 -8.86509 -8.25889 -7.93202 -6.29823 -4.32644 0.01830 2.45124 3.03842 3.18295 3.25435 3.31611 3.53595 3.82674 3.91919 3.95764 4.24417 4.44700 4.61376 4.65712 4.72713 4.78571 4.90173 4.99678 5.05189 5.15142 5.17097 5.26905 5.31569 5.38374 5.42279 5.49781 5.53121 5.64814 5.72763 5.74128 5.85250 5.89292 5.96952 6.02080 6.10819 6.16223 6.27345 6.46509 6.67901 6.71755 6.95512 7.00371 7.11156 7.12874 7.29698 8.02355 8.40306 8.65289 8.79917 9.29893 10.82124 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007547 B = 0.003584 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3708.971789 B = 7811.185728 C =10460.455601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.618 3.382 3 O -0.962 6.962 4 O -0.959 6.959 5 N -1.118 6.118 6 C 0.114 3.886 7 C -0.124 4.124 8 C 0.071 3.929 9 H 0.077 0.923 10 C -0.111 4.111 11 C -0.121 4.121 12 C -0.112 4.112 13 C 0.034 3.966 14 N -0.507 5.507 15 C 0.025 3.975 16 C 0.468 3.532 17 O -0.556 6.556 18 N -0.703 5.703 19 C 0.221 3.779 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.078 3.922 23 N -0.891 5.891 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.263 1.263 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.419 0.581 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.397 0.603 47 H 0.023 0.977 48 H 0.019 0.981 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.193 -7.071 -16.168 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.709 3.291 3 O -0.952 6.952 4 O -0.949 6.949 5 N -0.878 5.878 6 C -0.013 4.013 7 C -0.163 4.163 8 C -0.038 4.038 9 H 0.095 0.905 10 C -0.149 4.149 11 C -0.158 4.158 12 C -0.150 4.150 13 C -0.093 4.093 14 N -0.230 5.230 15 C -0.106 4.106 16 C 0.252 3.748 17 O -0.437 6.437 18 N -0.351 5.351 19 C 0.098 3.902 20 C -0.583 4.583 21 H 0.098 0.902 22 C -0.126 4.126 23 N -0.528 5.528 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.187 1.187 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.254 0.746 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.041 0.959 48 H 0.037 0.963 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.470 -7.402 -17.323 21.553 hybrid contribution -1.976 0.117 0.997 2.216 sum 8.495 -7.285 -16.326 19.793 Atomic orbital electron populations 1.30533 1.28410 1.11855 1.11637 1.04582 0.77508 0.73737 0.73247 1.93622 1.78029 1.37755 1.85786 1.93609 1.77077 1.61877 1.62376 1.55532 1.74274 1.21503 1.36491 1.21385 0.99478 0.81306 0.99111 1.21897 1.00919 0.96886 0.96587 1.21791 0.99091 0.93214 0.89698 0.90533 1.21670 1.01787 0.94331 0.97136 1.21556 1.00597 0.96664 0.97016 1.21538 1.00669 0.97692 0.95134 1.22402 1.02062 0.87747 0.97118 1.62364 1.56311 1.01796 1.02539 1.22407 0.92524 0.98217 0.97499 1.21917 0.91740 0.81359 0.79771 1.90542 1.58263 1.41829 1.53103 1.46371 1.11476 1.32816 1.44435 1.19466 0.77277 0.97270 0.96169 1.21092 0.95443 1.15197 1.26608 0.90244 1.24799 0.98707 0.94848 0.94215 1.69873 1.22397 1.29152 1.31343 0.86819 0.81986 0.80507 0.80327 1.19856 1.20870 1.18708 0.84995 0.85438 0.85354 0.74635 0.89879 0.91717 0.90854 0.90210 0.91602 0.91280 0.91997 0.92209 0.91961 0.91744 0.91612 0.90425 0.88011 0.87766 0.76969 0.95910 0.96324 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.15 10.89 101.05 1.10 -3.05 16 2 S 2.62 22.70 6.10 -107.50 -0.66 22.04 16 3 O -0.96 -11.67 18.08 -57.54 -1.04 -12.71 16 4 O -0.96 -11.40 17.50 -57.54 -1.01 -12.40 16 5 N -1.12 -9.06 5.89 -10.61 -0.06 -9.12 16 6 C 0.11 0.99 5.76 -4.04 -0.02 0.97 16 7 C -0.12 -1.19 4.58 -26.73 -0.12 -1.31 16 8 C 0.07 0.81 1.50 -67.72 -0.10 0.71 16 9 H 0.08 1.10 5.90 -51.93 -0.31 0.79 16 10 C -0.11 -1.11 5.11 -26.65 -0.14 -1.25 16 11 C -0.12 -1.22 6.00 -26.61 -0.16 -1.38 16 12 C -0.11 -1.17 6.09 -26.65 -0.16 -1.34 16 13 C 0.03 0.43 5.02 -3.83 -0.02 0.41 16 14 N -0.51 -6.03 4.69 -228.12 -1.07 -7.10 16 15 C 0.03 0.30 5.41 -4.97 -0.03 0.27 16 16 C 0.47 7.71 7.23 -10.98 -0.08 7.63 16 17 O -0.56 -10.79 11.64 5.56 0.06 -10.72 16 18 N -0.70 -12.86 5.55 -61.46 -0.34 -13.20 16 19 C 0.22 5.10 4.50 -5.19 -0.02 5.08 16 20 C -0.55 -14.36 9.83 -34.44 -0.34 -14.70 16 21 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 22 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 23 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 24 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 28 H 0.13 0.76 8.14 -51.92 -0.42 0.33 16 29 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.42 3.00 8.62 -34.47 -0.30 2.71 16 32 H 0.08 0.69 6.39 -51.93 -0.33 0.36 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.72 5.96 -51.93 -0.31 0.41 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.59 6.73 -51.93 -0.35 0.24 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.08 1.21 5.46 -51.93 -0.28 0.93 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.10 1.05 5.92 -51.93 -0.31 0.74 16 46 H 0.40 6.39 8.32 -40.82 -0.34 6.05 16 47 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 48 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 49 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -35.44 390.89 -10.25 -45.69 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.94 Total: 6.46 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.19 Total: -5.91 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.70 Total: -54.43 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.98 Total: -35.84 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 16 Polarization: 22.70 SS G_CDS: -0.66 Total: 22.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.44 -10.25 -45.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052134431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.412 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds