Wall clock time and date at job start Wed Apr 1 2020 04:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 110.53986 * 2 1 4 4 O 1.42098 * 110.54120 * 223.25346 * 2 1 3 5 5 N 1.65597 * 104.44980 * 111.62461 * 2 1 3 6 6 C 1.46505 * 119.99951 * 65.00204 * 5 2 1 7 7 C 1.53001 * 109.46996 * 164.99845 * 6 5 2 8 8 C 1.52998 * 109.46809 * 174.91439 * 7 6 5 9 9 H 1.09004 * 109.45744 * 305.08347 * 8 7 6 10 10 C 1.53043 * 109.46477 * 65.05516 * 8 7 6 11 11 C 1.53116 * 109.28222 * 179.19434 * 10 8 7 12 12 C 1.53115 * 109.15959 * 302.34467 * 11 10 8 13 13 C 1.53041 * 109.27880 * 57.65489 * 12 11 10 14 14 N 1.46844 * 109.46475 * 185.10800 * 8 7 6 15 15 C 1.46901 * 111.00126 * 54.14175 * 14 8 7 16 16 C 1.50701 * 109.46630 * 63.13856 * 15 14 8 17 17 O 1.21282 * 120.00039 * 3.96477 * 16 15 14 18 18 N 1.34780 * 119.99767 * 183.96467 * 16 15 14 19 19 C 1.46502 * 119.99595 * 180.02562 * 18 16 15 20 20 C 1.50708 * 109.46765 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99891 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99707 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99807 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00119 * 0.02562 * 22 20 19 25 25 H 1.48490 * 109.47469 * 89.99824 * 24 22 20 26 26 H 1.48506 * 109.46748 * 209.99969 * 24 22 20 27 27 H 1.48505 * 109.47204 * 329.99569 * 24 22 20 28 28 H 1.09011 * 109.47021 * 308.37268 * 1 2 3 29 29 H 1.08997 * 109.47112 * 68.37110 * 1 2 3 30 30 H 1.08994 * 109.47376 * 188.37973 * 1 2 3 31 31 H 0.97002 * 120.00001 * 244.99644 * 5 2 1 32 32 H 1.08996 * 109.47155 * 44.99800 * 6 5 2 33 33 H 1.09003 * 109.46613 * 284.99763 * 6 5 2 34 34 H 1.08997 * 109.47151 * 54.92019 * 7 6 5 35 35 H 1.09000 * 109.46948 * 294.91401 * 7 6 5 36 36 H 1.09001 * 109.49885 * 299.13444 * 10 8 7 37 37 H 1.09003 * 109.50350 * 59.20928 * 10 8 7 38 38 H 1.09002 * 109.52252 * 62.24779 * 11 10 8 39 39 H 1.08994 * 109.52474 * 182.43893 * 11 10 8 40 40 H 1.09000 * 109.50550 * 177.59525 * 12 11 10 41 41 H 1.08997 * 109.50527 * 297.67491 * 12 11 10 42 42 H 1.08995 * 109.46318 * 180.80612 * 13 12 11 43 43 H 1.09000 * 109.46292 * 60.83462 * 13 12 11 44 44 H 1.08993 * 109.47238 * 183.13994 * 15 14 8 45 45 H 1.09005 * 109.47088 * 303.14565 * 15 14 8 46 46 H 0.96992 * 119.99809 * 359.97438 * 18 16 15 47 47 H 1.09006 * 109.47051 * 299.99781 * 19 18 16 48 48 H 1.08996 * 109.47660 * 60.00107 * 19 18 16 49 49 H 0.96998 * 120.00372 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8908 -1.9707 1.8507 7 6 2.6876 -2.3831 3.0901 8 6 2.2442 -3.7762 3.5411 9 1 1.1651 -3.7817 3.6948 10 6 2.6112 -4.8013 2.4655 11 6 2.1838 -6.1963 2.9298 12 6 2.8632 -6.5116 4.2653 13 6 2.4889 -5.4370 5.2887 14 7 2.9193 -4.1214 4.7986 15 6 2.7013 -3.0837 5.8153 16 6 1.2318 -2.9978 6.1381 17 8 0.4529 -3.7767 5.6306 18 7 0.7831 -2.0554 6.9908 19 6 -0.6454 -1.9723 7.3050 20 6 -0.8815 -0.8427 8.2744 21 1 -0.0506 -0.2467 8.6218 22 6 -2.1584 -0.5702 8.7175 23 7 -2.3645 0.4152 9.5637 24 14 -3.5954 -1.6015 8.1170 25 1 -3.7921 -2.7558 9.0301 26 1 -4.8264 -0.7710 8.0967 27 1 -3.3103 -2.0975 6.7465 28 1 -0.3634 0.6380 0.8058 29 1 -0.3633 0.3788 -0.9553 30 1 -0.3634 -1.0166 0.1498 31 1 2.6921 -0.0236 2.1255 32 1 2.1394 -2.6334 1.0219 33 1 0.8243 -2.0405 2.0646 34 1 2.5081 -1.6673 3.8923 35 1 3.7506 -2.4002 2.8495 36 1 2.0975 -4.5537 1.5366 37 1 3.6886 -4.7861 2.3008 38 1 1.1015 -6.2223 3.0567 39 1 2.4821 -6.9351 2.1860 40 1 2.5297 -7.4860 4.6222 41 1 3.9446 -6.5245 4.1293 42 1 2.9826 -5.6507 6.2367 43 1 1.4087 -5.4347 5.4343 44 1 3.2574 -3.3368 6.7178 45 1 3.0461 -2.1227 5.4334 46 1 1.4062 -1.4327 7.3969 47 1 -1.2086 -1.7891 6.3900 48 1 -0.9742 -2.9102 7.7525 49 1 -3.2627 0.6067 9.8758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052134431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:08 Heat of formation + Delta-G solvation = -140.451146 kcal Electronic energy + Delta-G solvation = -29880.401676 eV Core-core repulsion = 25775.075334 eV Total energy + Delta-G solvation = -4105.326342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.49087 -39.28360 -38.16532 -37.04760 -36.78003 -36.11177 -34.50825 -34.34876 -33.09473 -30.46888 -30.28368 -29.00764 -27.83456 -24.88212 -24.50631 -23.39333 -22.07231 -21.40566 -20.71990 -20.33650 -19.08621 -18.55233 -17.66819 -17.57727 -17.25897 -17.11953 -16.67281 -16.45440 -16.14157 -15.83348 -15.77439 -15.39310 -15.09703 -14.96560 -14.59221 -14.53325 -14.07339 -14.00561 -13.90149 -13.87684 -13.58645 -13.46688 -13.19658 -13.08601 -13.05245 -12.78128 -12.74330 -12.60596 -12.42363 -12.32440 -11.97520 -11.95680 -11.67002 -11.60964 -11.54102 -11.31920 -11.17180 -10.99071 -10.92712 -10.35998 -9.86096 -9.05214 -8.40929 -6.47795 -0.65473 1.30100 1.32921 1.43750 1.72441 1.78157 2.25644 2.53654 2.85670 2.92747 2.94663 3.28533 3.81925 3.84377 3.93626 4.02497 4.05975 4.09973 4.16880 4.23142 4.34623 4.37746 4.49184 4.57569 4.65174 4.65725 4.77697 4.82150 4.88004 4.93321 4.94832 5.01286 5.02828 5.10025 5.16746 5.18178 5.26418 5.27936 5.32388 5.38830 5.53142 5.65077 6.00666 6.09240 6.11690 6.16684 6.54466 6.87038 7.15404 7.43860 8.73789 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007547 B = 0.003584 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3708.971789 B = 7811.185728 C =10460.455601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.632 3.368 3 O -0.999 6.999 4 O -0.994 6.994 5 N -1.116 6.116 6 C 0.112 3.888 7 C -0.120 4.120 8 C 0.071 3.929 9 H 0.046 0.954 10 C -0.110 4.110 11 C -0.121 4.121 12 C -0.108 4.108 13 C 0.033 3.967 14 N -0.499 5.499 15 C 0.033 3.967 16 C 0.468 3.532 17 O -0.583 6.583 18 N -0.705 5.705 19 C 0.235 3.765 20 C -0.546 4.546 21 H 0.059 0.941 22 C 0.027 3.973 23 N -0.932 5.932 24 Si 0.937 3.063 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.259 1.259 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.423 0.577 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.407 0.593 47 H 0.011 0.989 48 H 0.006 0.994 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.732 -8.031 -17.359 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.815 4.815 2 S 2.727 3.273 3 O -0.990 6.990 4 O -0.984 6.984 5 N -0.876 5.876 6 C -0.015 4.015 7 C -0.159 4.159 8 C -0.039 4.039 9 H 0.064 0.936 10 C -0.147 4.147 11 C -0.159 4.159 12 C -0.146 4.146 13 C -0.094 4.094 14 N -0.221 5.221 15 C -0.098 4.098 16 C 0.255 3.745 17 O -0.465 6.465 18 N -0.356 5.356 19 C 0.111 3.889 20 C -0.584 4.584 21 H 0.077 0.923 22 C -0.174 4.174 23 N -0.570 5.570 24 Si 0.761 3.239 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.184 1.184 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.259 0.741 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.140 0.860 45 H 0.147 0.853 46 H 0.243 0.757 47 H 0.029 0.971 48 H 0.024 0.976 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.079 -8.367 -18.522 23.147 hybrid contribution -2.130 0.395 1.376 2.566 sum 8.949 -7.972 -17.146 20.919 Atomic orbital electron populations 1.30408 1.24728 1.13215 1.13173 1.03944 0.78494 0.72236 0.72601 1.93570 1.79717 1.39451 1.86254 1.93560 1.78778 1.62494 1.63616 1.55359 1.74688 1.21410 1.36166 1.21407 0.99613 0.81536 0.98939 1.21856 1.01560 0.95632 0.96834 1.21790 0.97265 0.94838 0.89957 0.93585 1.21681 1.02339 0.93689 0.97012 1.21565 0.99496 0.97402 0.97409 1.21519 1.01237 0.97215 0.94635 1.22376 0.99957 0.88826 0.98262 1.62463 1.55568 1.01509 1.02588 1.22572 0.88966 0.99685 0.98627 1.22807 0.93540 0.79857 0.78274 1.90558 1.59632 1.42590 1.53738 1.46241 1.09662 1.34113 1.45539 1.19009 0.80218 0.95181 0.94537 1.21326 0.94896 1.15487 1.26645 0.92306 1.25593 1.01460 0.95898 0.94412 1.69981 1.23247 1.30911 1.32906 0.85871 0.79057 0.79099 0.79893 1.19312 1.19988 1.18366 0.84075 0.83627 0.83962 0.74113 0.89387 0.91412 0.91058 0.89211 0.90548 0.90468 0.93738 0.90475 0.91338 0.90706 0.91118 0.93761 0.85970 0.85285 0.75708 0.97073 0.97626 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.64 10.89 113.37 1.23 -5.41 16 2 S 2.63 43.13 6.10 -56.49 -0.34 42.79 16 3 O -1.00 -23.90 18.08 -127.65 -2.31 -26.21 16 4 O -0.99 -22.90 17.50 -127.65 -2.23 -25.14 16 5 N -1.12 -16.61 5.89 -187.48 -1.10 -17.72 16 6 C 0.11 1.77 5.76 86.38 0.50 2.26 16 7 C -0.12 -2.07 4.58 30.59 0.14 -1.93 16 8 C 0.07 1.51 1.50 44.94 0.07 1.58 16 9 H 0.05 1.31 5.90 -2.38 -0.01 1.29 16 10 C -0.11 -1.97 5.11 30.65 0.16 -1.81 16 11 C -0.12 -2.27 6.00 30.67 0.18 -2.08 16 12 C -0.11 -2.07 6.09 30.65 0.19 -1.88 16 13 C 0.03 0.80 5.02 86.33 0.43 1.23 16 14 N -0.50 -10.94 4.69 -875.64 -4.11 -15.05 16 15 C 0.03 0.72 5.41 85.56 0.46 1.18 16 16 C 0.47 15.04 7.23 87.66 0.63 15.68 16 17 O -0.58 -22.59 11.64 -3.04 -0.04 -22.63 16 18 N -0.71 -25.44 5.55 -466.76 -2.59 -28.03 16 19 C 0.23 10.85 4.50 85.64 0.39 11.24 16 20 C -0.55 -28.99 9.83 25.60 0.25 -28.73 16 21 H 0.06 3.29 7.84 -2.91 -0.02 3.27 16 22 C 0.03 1.47 5.47 84.66 0.46 1.93 16 23 N -0.93 -54.50 13.96 21.45 0.30 -54.20 16 24 Si 0.94 42.81 27.47 68.60 1.88 44.70 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.26 -11.62 6.54 99.48 0.65 -10.97 16 28 H 0.14 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.42 5.56 8.62 -96.74 -0.83 4.73 16 32 H 0.09 1.32 6.39 -2.39 -0.02 1.30 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.25 5.96 -2.39 -0.01 1.24 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.21 6.73 -2.39 -0.02 1.19 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 43 H 0.04 1.38 5.46 -2.39 -0.01 1.37 16 44 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.13 2.24 5.92 -2.38 -0.01 2.22 16 46 H 0.41 12.82 8.32 -92.71 -0.77 12.05 16 47 H 0.01 0.55 7.20 -2.38 -0.02 0.53 16 48 H 0.01 0.28 7.57 -2.39 -0.02 0.27 16 49 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -76.81 390.89 -6.13 -82.95 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.69 Total: 25.29 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.10 Total: -6.75 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -7.50 Total: -115.00 kcal Atomic # 8 Polarization: -69.40 SS G_CDS: -4.58 Total: -73.97 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Atomic # 16 Polarization: 43.13 SS G_CDS: -0.34 Total: 42.79 kcal Total: -76.81 -6.13 -82.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052134431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.506 kcal (2) G-P(sol) polarization free energy of solvation -76.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds