Wall clock time and date at job start Wed Apr 1 2020 04:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48497 * 109.47223 * 270.00018 * 3 2 1 5 5 H 1.48497 * 109.46765 * 30.00208 * 3 2 1 6 6 H 1.48504 * 109.46965 * 150.00087 * 3 2 1 7 7 C 1.38810 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00384 * 162.87584 * 7 2 1 9 9 N 1.36938 * 119.99850 * 342.87256 * 7 2 1 10 10 C 1.46929 * 120.63343 * 332.04013 * 9 7 2 11 11 C 1.53187 * 108.77349 * 233.58569 * 10 9 7 12 12 C 1.53038 * 109.31640 * 305.36156 * 11 10 9 13 13 N 1.46498 * 109.46292 * 181.38746 * 12 11 10 14 14 C 1.34775 * 120.00326 * 155.00375 * 13 12 11 15 15 O 1.21582 * 119.99936 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00223 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00089 * 179.97438 * 16 14 13 18 18 C 1.50699 * 115.54852 * 34.32977 * 17 16 14 19 19 C 1.38219 * 120.01602 * 263.13659 * 18 17 16 20 20 C 1.38226 * 120.02942 * 179.72021 * 19 18 17 21 21 C 1.38273 * 120.04666 * 0.55353 * 20 19 18 22 22 C 1.38169 * 120.02646 * 359.72270 * 21 20 19 23 23 C 1.38444 * 120.01293 * 83.40613 * 18 17 16 24 24 F 1.35099 * 120.02268 * 359.97438 * 23 18 17 25 25 C 1.53001 * 117.50361 * 248.62210 * 17 16 14 26 26 C 1.52993 * 117.50002 * 179.97438 * 17 16 14 27 27 C 1.53043 * 109.53553 * 61.36935 * 12 11 10 28 28 C 1.46931 * 120.63099 * 152.01766 * 9 7 2 29 29 H 0.96997 * 120.00552 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58567 * 113.79557 * 10 9 7 31 31 H 1.08994 * 109.70035 * 353.44367 * 10 9 7 32 32 H 1.09003 * 109.49658 * 185.40827 * 11 10 9 33 33 H 1.09001 * 109.50191 * 65.32085 * 11 10 9 34 34 H 1.09000 * 109.46205 * 301.34575 * 12 11 10 35 35 H 0.97001 * 119.99854 * 335.00182 * 13 12 11 36 36 H 0.97001 * 119.99956 * 359.97438 * 16 14 13 37 37 H 1.08001 * 119.98194 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.97561 * 180.25143 * 20 19 18 39 39 H 1.07992 * 119.98242 * 179.74244 * 21 20 19 40 40 H 1.07996 * 120.01596 * 180.02562 * 22 21 20 41 41 H 1.09004 * 117.49166 * 0.02562 * 25 17 16 42 42 H 1.08993 * 117.49796 * 145.02083 * 25 17 16 43 43 H 1.09001 * 117.50306 * 214.98015 * 26 17 16 44 44 H 1.09000 * 117.50270 * 0.02562 * 26 17 16 45 45 H 1.08996 * 109.49702 * 58.58853 * 27 12 11 46 46 H 1.09001 * 109.49713 * 178.68550 * 27 12 11 47 47 H 1.09002 * 109.58757 * 246.20542 * 28 9 7 48 48 H 1.08997 * 109.58427 * 6.48283 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0543 -1.2228 -0.2759 9 7 1.3711 -2.3619 0.3482 10 6 0.2272 -2.3383 1.2700 11 6 0.4996 -3.3143 2.4189 12 6 0.8152 -4.6971 1.8442 13 7 1.0438 -5.6410 2.9411 14 6 0.8416 -6.9595 2.7488 15 8 0.4689 -7.3656 1.6651 16 7 1.0514 -7.8278 3.7581 17 6 0.8310 -9.2609 3.5491 18 6 1.1638 -9.7758 2.1725 19 6 0.1648 -9.9213 1.2285 20 6 0.4707 -10.3880 -0.0361 21 6 1.7745 -10.7207 -0.3547 22 6 2.7739 -10.5815 0.5891 23 6 2.4696 -10.1085 1.8546 24 9 3.4461 -9.9714 2.7781 25 6 -0.3465 -9.9087 4.2805 26 6 1.0871 -10.1950 4.7334 27 6 2.0705 -4.6148 0.9726 28 6 1.8158 -3.6536 -0.1927 29 1 -0.4851 0.8400 0.0004 30 1 -0.6757 -2.6409 0.7398 31 1 0.0970 -1.3321 1.6684 32 1 -0.3808 -3.3783 3.0583 33 1 1.3491 -2.9605 3.0032 34 1 -0.0248 -5.0396 1.2399 35 1 1.3407 -5.3169 3.8058 36 1 1.3483 -7.5037 4.6228 37 1 -0.8546 -9.6662 1.4778 38 1 -0.3099 -10.4975 -0.7744 39 1 2.0116 -11.0892 -1.3417 40 1 3.7922 -10.8411 0.3400 41 1 -0.9574 -9.2683 4.9168 42 1 -0.8806 -10.7073 3.7659 43 1 1.4956 -11.1821 4.5168 44 1 1.4192 -9.7433 5.6682 45 1 2.9051 -4.2489 1.5704 46 1 2.3080 -5.6045 0.5825 47 1 1.0425 -4.0635 -0.8424 48 1 2.7350 -3.5144 -0.7618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077594495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:32 Heat of formation + Delta-G solvation = 7.544337 kcal Electronic energy + Delta-G solvation = -31122.878245 eV Core-core repulsion = 26900.898307 eV Total energy + Delta-G solvation = -4221.979938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.89583 -40.43742 -39.03718 -37.69152 -36.88227 -34.29737 -33.01004 -31.73896 -30.93251 -30.38079 -30.02180 -29.17302 -25.06195 -23.90151 -23.30185 -22.49205 -22.13291 -22.07547 -20.94024 -20.09485 -19.38259 -18.14969 -17.67644 -16.91642 -16.60753 -16.24517 -15.72644 -15.58189 -15.14300 -14.96713 -14.65267 -14.54113 -14.12002 -14.07538 -13.66990 -13.51582 -13.27952 -13.19672 -12.95176 -12.65343 -12.33573 -12.30784 -12.02267 -11.87194 -11.50189 -11.40884 -11.09979 -11.03985 -10.81985 -10.79546 -10.69182 -10.47156 -10.24484 -10.08997 -10.00955 -9.73535 -9.52866 -8.98599 -8.79286 -8.68343 -8.55143 -8.40768 -6.66579 -5.78323 -3.19908 1.08316 1.23382 2.69951 3.21153 3.37974 3.44928 3.47434 3.53197 3.67835 4.06934 4.26055 4.35794 4.50780 4.52185 4.61540 4.84713 4.95725 5.12828 5.26091 5.30787 5.35845 5.37713 5.45097 5.53618 5.54863 5.64956 5.75898 5.80737 5.93255 6.01687 6.07244 6.11508 6.29987 6.32232 6.38585 6.39087 6.44956 6.53104 6.61269 6.64508 6.83556 6.85111 6.93743 7.01981 7.13572 7.33957 7.63477 7.80652 8.17579 8.45989 8.80775 9.22271 9.85686 10.42869 11.30665 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.002545 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.459502 B =11000.502897 C =11543.891558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.172 3.828 13 N -0.739 5.739 14 C 0.703 3.297 15 O -0.574 6.574 16 N -0.717 5.717 17 C 0.168 3.832 18 C -0.075 4.075 19 C -0.028 4.028 20 C -0.135 4.135 21 C -0.087 4.087 22 C -0.165 4.165 23 C 0.110 3.890 24 F -0.140 7.140 25 C -0.179 4.179 26 C -0.167 4.167 27 C -0.138 4.138 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.020 0.980 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.389 0.611 36 H 0.397 0.603 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.020 0.980 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -23.481 9.281 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.049 3.951 11 C -0.186 4.186 12 C 0.068 3.932 13 N -0.393 5.393 14 C 0.403 3.597 15 O -0.451 6.451 16 N -0.372 5.372 17 C 0.079 3.921 18 C -0.077 4.077 19 C -0.046 4.046 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.184 4.184 23 C 0.090 3.910 24 F -0.118 7.118 25 C -0.218 4.218 26 C -0.205 4.205 27 C -0.179 4.179 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.222 0.778 36 H 0.231 0.769 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.422 -23.639 8.271 25.048 hybrid contribution 0.963 1.370 1.051 1.977 sum 1.384 -22.269 9.322 24.181 Atomic orbital electron populations 1.70024 1.05242 1.25493 1.54033 1.25039 0.95279 0.98390 1.00971 0.86313 0.79150 0.83677 0.77734 1.21395 1.21581 1.20520 1.19184 0.92646 0.84813 1.41467 0.91698 1.44097 1.35839 1.01609 1.50011 1.20725 0.88882 0.97890 0.87618 1.22545 1.00424 0.94814 1.00841 1.20879 0.98244 0.87468 0.86619 1.45578 1.72772 1.04869 1.16062 1.16009 0.78545 0.81143 0.84012 1.90935 1.52806 1.77234 1.24123 1.44505 1.74143 1.04158 1.14405 1.18528 1.03191 0.79983 0.90397 1.18731 0.92038 1.02207 0.94694 1.20704 0.98973 0.93128 0.91814 1.21140 0.96793 1.00736 0.96689 1.20973 0.92502 0.98291 0.98762 1.21020 1.00823 1.04213 0.92318 1.17498 0.84723 1.01585 0.87177 1.91470 1.61478 1.93675 1.65218 1.23560 0.91519 1.03315 1.03442 1.23381 0.99235 1.00393 0.97483 1.22378 0.97270 0.99433 0.98804 1.20867 0.97803 0.86493 0.92689 0.93631 0.96141 0.89070 0.92830 0.92294 0.90098 0.77791 0.76862 0.85441 0.85506 0.85331 0.85105 0.88017 0.87906 0.87745 0.87977 0.92585 0.92776 0.96224 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -15.00 2.99 -172.33 -0.52 -15.52 16 10 C 0.18 4.15 5.30 -3.71 -0.02 4.13 16 11 C -0.15 -2.71 5.55 -26.62 -0.15 -2.86 16 12 C 0.17 3.05 2.42 -67.89 -0.16 2.89 16 13 N -0.74 -10.71 5.08 -58.64 -0.30 -11.01 16 14 C 0.70 10.62 8.37 -86.92 -0.73 9.90 16 15 O -0.57 -10.50 12.74 5.29 0.07 -10.43 16 16 N -0.72 -8.27 5.59 -53.51 -0.30 -8.57 16 17 C 0.17 1.83 2.15 -132.98 -0.29 1.54 16 18 C -0.07 -0.94 3.68 -104.55 -0.38 -1.33 16 19 C -0.03 -0.34 7.45 -39.59 -0.30 -0.63 16 20 C -0.14 -1.49 10.05 -39.57 -0.40 -1.88 16 21 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 22 C -0.16 -1.88 10.03 -39.52 -0.40 -2.27 16 23 C 0.11 1.42 7.19 -39.41 -0.28 1.13 16 24 F -0.14 -1.84 16.54 2.25 0.04 -1.81 16 25 C -0.18 -1.51 9.86 -26.71 -0.26 -1.77 16 26 C -0.17 -1.34 9.78 -26.71 -0.26 -1.61 16 27 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 28 C 0.15 3.28 6.52 -3.71 -0.02 3.25 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 35 H 0.39 4.57 8.62 -40.82 -0.35 4.22 16 36 H 0.40 3.46 8.79 -40.82 -0.36 3.10 16 37 H 0.13 1.51 8.01 -52.49 -0.42 1.09 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -32.56 392.28 -11.23 -43.78 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.29 Total: 7.29 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -4.43 Total: -0.73 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.49 Total: -60.64 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.56 -11.23 -43.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077594495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.329 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds