Wall clock time and date at job start Wed Apr 1 2020 04:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48497 * 109.47223 * 270.00018 * 3 2 1 5 5 H 1.48497 * 109.46765 * 30.00208 * 3 2 1 6 6 H 1.48504 * 109.46965 * 150.00087 * 3 2 1 7 7 C 1.38810 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00384 * 162.87584 * 7 2 1 9 9 N 1.36938 * 119.99850 * 342.87256 * 7 2 1 10 10 C 1.46929 * 120.63343 * 332.04013 * 9 7 2 11 11 C 1.53187 * 108.77349 * 233.58569 * 10 9 7 12 12 C 1.53038 * 109.31640 * 305.36156 * 11 10 9 13 13 N 1.46498 * 109.46292 * 181.38746 * 12 11 10 14 14 C 1.34775 * 120.00326 * 155.00375 * 13 12 11 15 15 O 1.21582 * 119.99936 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00223 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00089 * 179.97438 * 16 14 13 18 18 C 1.50699 * 115.54852 * 34.32977 * 17 16 14 19 19 C 1.38219 * 120.01602 * 263.13659 * 18 17 16 20 20 C 1.38226 * 120.02942 * 179.72021 * 19 18 17 21 21 C 1.38273 * 120.04666 * 0.55353 * 20 19 18 22 22 C 1.38169 * 120.02646 * 359.72270 * 21 20 19 23 23 C 1.38444 * 120.01293 * 83.40613 * 18 17 16 24 24 F 1.35099 * 120.02268 * 359.97438 * 23 18 17 25 25 C 1.53001 * 117.50361 * 248.62210 * 17 16 14 26 26 C 1.52993 * 117.50002 * 179.97438 * 17 16 14 27 27 C 1.53043 * 109.53553 * 61.36935 * 12 11 10 28 28 C 1.46931 * 120.63099 * 152.01766 * 9 7 2 29 29 H 0.96997 * 120.00552 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58567 * 113.79557 * 10 9 7 31 31 H 1.08994 * 109.70035 * 353.44367 * 10 9 7 32 32 H 1.09003 * 109.49658 * 185.40827 * 11 10 9 33 33 H 1.09001 * 109.50191 * 65.32085 * 11 10 9 34 34 H 1.09000 * 109.46205 * 301.34575 * 12 11 10 35 35 H 0.97001 * 119.99854 * 335.00182 * 13 12 11 36 36 H 0.97001 * 119.99956 * 359.97438 * 16 14 13 37 37 H 1.08001 * 119.98194 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.97561 * 180.25143 * 20 19 18 39 39 H 1.07992 * 119.98242 * 179.74244 * 21 20 19 40 40 H 1.07996 * 120.01596 * 180.02562 * 22 21 20 41 41 H 1.09004 * 117.49166 * 0.02562 * 25 17 16 42 42 H 1.08993 * 117.49796 * 145.02083 * 25 17 16 43 43 H 1.09001 * 117.50306 * 214.98015 * 26 17 16 44 44 H 1.09000 * 117.50270 * 0.02562 * 26 17 16 45 45 H 1.08996 * 109.49702 * 58.58853 * 27 12 11 46 46 H 1.09001 * 109.49713 * 178.68550 * 27 12 11 47 47 H 1.09002 * 109.58757 * 246.20542 * 28 9 7 48 48 H 1.08997 * 109.58427 * 6.48283 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0543 -1.2228 -0.2759 9 7 1.3711 -2.3619 0.3482 10 6 0.2272 -2.3383 1.2700 11 6 0.4996 -3.3143 2.4189 12 6 0.8152 -4.6971 1.8442 13 7 1.0438 -5.6410 2.9411 14 6 0.8416 -6.9595 2.7488 15 8 0.4689 -7.3656 1.6651 16 7 1.0514 -7.8278 3.7581 17 6 0.8310 -9.2609 3.5491 18 6 1.1638 -9.7758 2.1725 19 6 0.1648 -9.9213 1.2285 20 6 0.4707 -10.3880 -0.0361 21 6 1.7745 -10.7207 -0.3547 22 6 2.7739 -10.5815 0.5891 23 6 2.4696 -10.1085 1.8546 24 9 3.4461 -9.9714 2.7781 25 6 -0.3465 -9.9087 4.2805 26 6 1.0871 -10.1950 4.7334 27 6 2.0705 -4.6148 0.9726 28 6 1.8158 -3.6536 -0.1927 29 1 -0.4851 0.8400 0.0004 30 1 -0.6757 -2.6409 0.7398 31 1 0.0970 -1.3321 1.6684 32 1 -0.3808 -3.3783 3.0583 33 1 1.3491 -2.9605 3.0032 34 1 -0.0248 -5.0396 1.2399 35 1 1.3407 -5.3169 3.8058 36 1 1.3483 -7.5037 4.6228 37 1 -0.8546 -9.6662 1.4778 38 1 -0.3099 -10.4975 -0.7744 39 1 2.0116 -11.0892 -1.3417 40 1 3.7922 -10.8411 0.3400 41 1 -0.9574 -9.2683 4.9168 42 1 -0.8806 -10.7073 3.7659 43 1 1.4956 -11.1821 4.5168 44 1 1.4192 -9.7433 5.6682 45 1 2.9051 -4.2489 1.5704 46 1 2.3080 -5.6045 0.5825 47 1 1.0425 -4.0635 -0.8424 48 1 2.7350 -3.5144 -0.7618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077594495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:31 Heat of formation + Delta-G solvation = -11.870901 kcal Electronic energy + Delta-G solvation = -31123.720153 eV Core-core repulsion = 26900.898307 eV Total energy + Delta-G solvation = -4222.821846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.83539 -41.46630 -40.11344 -39.00652 -37.97984 -35.88641 -34.30665 -33.34311 -31.78683 -31.69042 -31.22934 -30.89081 -26.93199 -24.82362 -24.10240 -24.00826 -23.76649 -22.87087 -22.22071 -21.20906 -20.84418 -19.44311 -18.61206 -18.58384 -17.70888 -17.12449 -16.95282 -16.66049 -16.56372 -16.07008 -16.02696 -15.67079 -15.37852 -15.31751 -15.10703 -14.94987 -14.76464 -14.32824 -14.12953 -14.11062 -13.91193 -13.24384 -13.18351 -13.01511 -12.84767 -12.60814 -12.51501 -12.48656 -12.24902 -12.22236 -12.02976 -11.91544 -11.83583 -11.56400 -11.53840 -11.36026 -11.18374 -10.55922 -10.09879 -9.70856 -9.63694 -9.53156 -8.71359 -7.88291 -5.33688 0.22268 0.36338 1.47934 1.49125 1.59329 1.66268 2.17758 2.51766 2.67965 2.83602 3.16935 3.28514 3.37671 3.48172 3.66061 3.82135 3.85542 3.90500 4.05054 4.09241 4.18485 4.34557 4.39690 4.45370 4.49901 4.55655 4.63922 4.70196 4.81198 4.85169 4.92418 4.98734 5.03229 5.05696 5.15252 5.15598 5.16571 5.24012 5.28408 5.44582 5.46602 5.52659 5.58875 5.63582 5.64485 5.69942 5.99464 6.06111 6.38493 7.14065 7.15140 7.68113 7.83369 8.36509 9.18881 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.002545 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.459502 B =11000.502897 C =11543.891558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.048 4.048 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.128 4.128 12 C 0.187 3.813 13 N -0.730 5.730 14 C 0.699 3.301 15 O -0.608 6.608 16 N -0.702 5.702 17 C 0.134 3.866 18 C -0.084 4.084 19 C -0.044 4.044 20 C -0.142 4.142 21 C -0.090 4.090 22 C -0.173 4.173 23 C 0.085 3.915 24 F -0.146 7.146 25 C -0.168 4.168 26 C -0.148 4.148 27 C -0.121 4.121 28 C 0.147 3.853 29 H 0.251 0.749 30 H -0.005 1.005 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.406 0.594 36 H 0.412 0.588 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.007 0.993 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 -24.487 10.796 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.167 4.167 12 C 0.082 3.918 13 N -0.385 5.385 14 C 0.399 3.601 15 O -0.487 6.487 16 N -0.357 5.357 17 C 0.046 3.954 18 C -0.086 4.086 19 C -0.063 4.063 20 C -0.160 4.160 21 C -0.108 4.108 22 C -0.191 4.191 23 C 0.066 3.934 24 F -0.125 7.125 25 C -0.207 4.207 26 C -0.186 4.186 27 C -0.162 4.162 28 C 0.021 3.979 29 H 0.060 0.940 30 H 0.013 0.987 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.242 0.758 36 H 0.249 0.751 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.140 0.860 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.025 0.975 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.371 -24.687 9.850 26.615 hybrid contribution 0.648 1.592 0.511 1.793 sum 2.019 -23.095 10.361 25.393 Atomic orbital electron populations 1.70179 1.06663 1.25991 1.55184 1.25802 0.96047 1.01483 1.01036 0.85267 0.78123 0.79439 0.77534 1.21317 1.21646 1.19456 1.19505 0.92925 0.85929 1.41242 0.91643 1.44346 1.36015 1.02073 1.50799 1.20549 0.87666 0.97727 0.88663 1.22256 1.01830 0.93708 0.98932 1.20416 0.96673 0.87650 0.87108 1.45182 1.72941 1.04427 1.15902 1.16150 0.78360 0.81343 0.84262 1.90919 1.54238 1.77795 1.25778 1.44312 1.73131 1.04148 1.14152 1.18787 1.06089 0.79670 0.90833 1.18936 0.91948 1.02038 0.95667 1.20836 0.98967 0.93925 0.92562 1.21467 0.97755 1.00090 0.96719 1.21314 0.91994 0.97673 0.99776 1.21333 1.01959 1.03783 0.92068 1.17781 0.84952 1.02895 0.87781 1.91441 1.61658 1.93889 1.65494 1.23611 0.91599 1.02931 1.02591 1.23476 0.98623 0.99688 0.96771 1.22154 0.97995 0.98237 0.97775 1.20931 0.97204 0.85967 0.93824 0.93965 0.98700 0.91827 0.90490 0.91368 0.92456 0.75807 0.75111 0.85781 0.83767 0.82619 0.83580 0.87170 0.87424 0.87496 0.86048 0.92067 0.92829 0.97485 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 11.19 21.65 0.24 -54.98 16 2 C -0.05 -2.69 4.92 84.86 0.42 -2.28 16 3 Si 0.97 44.70 29.59 68.60 2.03 46.73 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.27 -14.79 9.58 84.03 0.81 -13.99 16 8 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 9 N -0.61 -31.24 2.99 -699.11 -2.09 -33.33 16 10 C 0.18 8.68 5.30 86.36 0.46 9.14 16 11 C -0.13 -4.59 5.55 30.67 0.17 -4.42 16 12 C 0.19 6.50 2.42 45.02 0.11 6.61 16 13 N -0.73 -19.83 5.08 -457.69 -2.33 -22.15 16 14 C 0.70 20.22 8.37 179.05 1.50 21.72 16 15 O -0.61 -22.02 12.74 -3.97 -0.05 -22.07 16 16 N -0.70 -14.88 5.59 -441.47 -2.47 -17.34 16 17 C 0.13 2.72 2.15 2.86 0.01 2.73 16 18 C -0.08 -2.06 3.68 -19.82 -0.07 -2.14 16 19 C -0.04 -1.07 7.45 22.26 0.17 -0.91 16 20 C -0.14 -3.02 10.05 22.28 0.22 -2.80 16 21 C -0.09 -1.75 10.04 22.26 0.22 -1.53 16 22 C -0.17 -3.78 10.03 22.31 0.22 -3.55 16 23 C 0.09 2.15 7.19 22.38 0.16 2.31 16 24 F -0.15 -3.74 16.54 44.97 0.74 -2.99 16 25 C -0.17 -2.50 9.86 30.61 0.30 -2.20 16 26 C -0.15 -2.03 9.78 30.61 0.30 -1.73 16 27 C -0.12 -4.54 5.65 30.67 0.17 -4.37 16 28 C 0.15 6.56 6.52 86.36 0.56 7.13 16 29 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 30 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.06 3.41 6.06 -2.39 -0.01 3.40 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 35 H 0.41 8.41 8.62 -92.71 -0.80 7.61 16 36 H 0.41 6.07 8.79 -92.71 -0.81 5.26 16 37 H 0.12 2.96 8.01 -2.91 -0.02 2.94 16 38 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.11 1.48 8.08 -2.39 -0.02 1.46 16 43 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.05 2.40 7.93 -2.39 -0.02 2.38 16 Total: -1.00 -71.36 392.28 1.18 -70.18 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.63 Total: 26.23 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.73 Total: 9.73 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -6.64 Total: -127.81 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.07 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.74 Total: -2.99 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -71.36 1.18 -70.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077594495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.313 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds