Wall clock time and date at job start Wed Apr 1 2020 04:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99697 * 2 1 4 4 C 1.53000 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 294.99516 * 4 3 2 6 6 C 1.46502 * 120.00345 * 275.00289 * 5 4 3 7 7 C 1.50697 * 109.47079 * 85.00200 * 6 5 4 8 8 H 1.08000 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99754 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99674 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00100 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46920 * 90.00615 * 11 9 7 13 13 H 1.48502 * 109.46849 * 210.00337 * 11 9 7 14 14 H 1.48493 * 109.47130 * 330.00506 * 11 9 7 15 15 S 1.65605 * 119.99782 * 95.00317 * 5 4 3 16 16 O 1.42099 * 106.40321 * 203.53813 * 15 5 4 17 17 O 1.42097 * 106.40157 * 336.45932 * 15 5 4 18 18 N 1.65600 * 107.21849 * 90.00219 * 15 5 4 19 19 C 1.47089 * 120.87617 * 269.71967 * 18 15 5 20 20 C 1.53696 * 108.27464 * 128.75423 * 19 18 15 21 21 N 1.46902 * 109.25807 * 54.08274 * 20 19 18 22 22 C 1.46898 * 111.00293 * 172.60742 * 21 20 19 23 23 C 1.52997 * 117.50065 * 13.04769 * 22 21 20 24 24 C 1.52992 * 117.49718 * 304.38766 * 22 21 20 25 25 C 1.46904 * 111.26849 * 296.75611 * 21 20 19 26 26 C 1.47072 * 120.88731 * 89.99713 * 18 15 5 27 27 H 1.08999 * 109.46836 * 299.99784 * 1 2 3 28 28 H 1.08998 * 109.47394 * 60.00226 * 1 2 3 29 29 H 1.08995 * 109.46929 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47416 * 60.00374 * 3 2 1 31 31 H 1.09001 * 109.47100 * 300.00056 * 3 2 1 32 32 H 1.09002 * 109.47398 * 54.99843 * 4 3 2 33 33 H 1.09001 * 109.47194 * 175.00023 * 4 3 2 34 34 H 1.08998 * 109.47222 * 205.00373 * 6 5 4 35 35 H 1.09000 * 109.46517 * 324.99960 * 6 5 4 36 36 H 0.97002 * 120.00059 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.62771 * 248.51902 * 19 18 15 38 38 H 1.08995 * 109.63024 * 9.10347 * 19 18 15 39 39 H 1.09000 * 109.65389 * 294.08133 * 20 19 18 40 40 H 1.08992 * 109.42206 * 173.94622 * 20 19 18 41 41 H 1.09005 * 115.54700 * 158.71779 * 22 21 20 42 42 H 1.09006 * 117.49506 * 0.02562 * 23 22 21 43 43 H 1.09002 * 117.50407 * 145.01484 * 23 22 21 44 44 H 1.09006 * 117.49885 * 214.97549 * 24 22 21 45 45 H 1.08996 * 117.50328 * 359.97438 * 24 22 21 46 46 H 1.09001 * 109.49190 * 303.14400 * 25 21 20 47 47 H 1.08997 * 109.51790 * 183.07615 * 25 21 20 48 48 H 1.09008 * 109.62445 * 350.89956 * 26 18 15 49 49 H 1.09005 * 109.62951 * 111.27977 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5642 1.2509 6 6 4.1827 1.3883 2.4445 7 6 2.8708 1.5671 3.1641 8 1 1.9732 1.1126 2.7714 9 6 2.8162 2.3118 4.3232 10 7 1.6712 2.4682 4.9509 11 14 4.3687 3.0984 5.0019 12 1 4.5248 4.4597 4.4293 13 1 4.2704 3.1917 6.4807 14 1 5.5447 2.2693 4.6353 15 16 4.2424 -1.0691 1.3166 16 8 4.1065 -1.4433 2.6806 17 8 3.4689 -1.6438 0.2722 18 7 5.8293 -1.3239 0.9178 19 6 6.2299 -1.5474 -0.4798 20 6 7.3778 -0.5811 -0.8125 21 7 8.4525 -0.7469 0.1752 22 6 9.6404 0.0296 -0.2039 23 6 9.4791 1.0717 -1.3125 24 6 10.2404 -0.2275 -1.5876 25 6 7.9965 -0.3865 1.5244 26 6 6.8747 -1.3388 1.9521 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 -0.8427 33 1 3.9785 2.1766 -0.0902 34 1 4.8962 0.8974 3.1063 35 1 4.5715 2.3632 2.1500 36 1 1.6328 2.9918 5.7666 37 1 6.5662 -2.5768 -0.6041 38 1 5.3837 -1.3535 -1.1387 39 1 7.0127 0.4456 -0.7838 40 1 7.7615 -0.8033 -1.8082 41 1 10.3294 0.2615 0.6084 42 1 8.4913 1.1813 -1.7603 43 1 10.0622 1.9889 -1.2299 44 1 11.3242 -0.1644 -1.6858 45 1 9.7541 -0.9731 -2.2165 46 1 7.6227 0.6374 1.5205 47 1 8.8286 -0.4673 2.2237 48 1 6.4549 -1.0069 2.9018 49 1 7.2693 -2.3492 2.0595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331533617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:52 Heat of formation + Delta-G solvation = -62.258878 kcal Electronic energy + Delta-G solvation = -31592.806632 eV Core-core repulsion = 27490.870961 eV Total energy + Delta-G solvation = -4101.935671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.63691 -37.55362 -36.61724 -36.53141 -35.41241 -35.01914 -32.69612 -32.45122 -31.13526 -29.59937 -27.18744 -26.28057 -25.60766 -23.97412 -22.69241 -22.37645 -21.76021 -21.41484 -20.11136 -18.34209 -17.44331 -17.18369 -16.67657 -16.32492 -16.05156 -15.70701 -15.42849 -15.07298 -14.70508 -14.65305 -14.38932 -14.22983 -14.00111 -13.78677 -13.35690 -12.97970 -12.59562 -12.44384 -12.40590 -12.36782 -11.97372 -11.88080 -11.84689 -11.49314 -11.35437 -11.25244 -11.23673 -11.13299 -11.07660 -11.06522 -10.78858 -10.70821 -10.56016 -10.47229 -10.35045 -10.19244 -9.50901 -8.99024 -8.94814 -8.59688 -8.27408 -8.10999 -6.08897 -4.07242 1.19695 3.22573 3.30587 3.30931 3.36170 3.51324 3.81278 4.12061 4.36256 4.40020 4.54642 4.68224 4.74829 4.77244 4.81183 5.09647 5.14589 5.18682 5.24997 5.33125 5.40298 5.42147 5.45012 5.51121 5.58687 5.61092 5.64699 5.67800 5.74320 5.83186 5.87098 5.88508 5.91751 6.02216 6.05685 6.15418 6.18559 6.28608 6.58240 6.62868 6.74463 6.85806 6.90564 7.08011 7.42660 7.57681 7.80986 8.49487 8.98489 9.50617 11.04381 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.004860 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.170883 B = 5760.520931 C = 7148.103501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.033 3.967 4 C 0.143 3.857 5 N -0.984 5.984 6 C 0.228 3.772 7 C -0.526 4.526 8 H 0.082 0.918 9 C 0.073 3.927 10 N -0.895 5.895 11 Si 0.870 3.130 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.265 1.265 15 S 2.778 3.222 16 O -0.963 6.963 17 O -0.964 6.964 18 N -1.017 6.017 19 C 0.129 3.871 20 C 0.037 3.963 21 N -0.503 5.503 22 C 0.024 3.976 23 C -0.222 4.222 24 C -0.172 4.172 25 C 0.043 3.957 26 C 0.127 3.873 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.045 0.955 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.718 -2.856 -13.637 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.046 4.046 4 C 0.017 3.983 5 N -0.824 5.824 6 C 0.104 3.896 7 C -0.565 4.565 8 H 0.100 0.900 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.190 1.190 15 S 2.787 3.213 16 O -0.947 6.947 17 O -0.948 6.948 18 N -0.856 5.856 19 C 0.003 3.997 20 C -0.092 4.092 21 N -0.225 5.225 22 C -0.085 4.085 23 C -0.261 4.261 24 C -0.210 4.210 25 C -0.086 4.086 26 C 0.001 3.999 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.063 0.937 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.214 -4.126 -13.200 19.127 hybrid contribution 0.581 2.036 0.380 2.151 sum 13.795 -2.090 -12.820 18.948 Atomic orbital electron populations 1.22654 0.82307 1.01991 0.99413 1.88061 1.18537 1.26916 1.95274 1.23166 0.94552 0.85799 1.01068 1.21033 0.92954 0.98979 0.85379 1.57607 1.80589 1.27066 1.17130 1.19420 0.97979 0.90398 0.81756 1.21430 0.94523 1.32322 1.08267 0.89964 1.24873 0.95771 0.96015 0.96281 1.69891 1.24768 1.40420 1.18279 0.86949 0.84468 0.79931 0.78923 1.20237 1.20934 1.18983 1.02281 0.72232 0.73317 0.73506 1.93611 1.84755 1.81736 1.34595 1.93593 1.66564 1.76184 1.58468 1.58736 1.26511 1.87149 1.13172 1.21501 0.96878 0.99526 0.81818 1.22705 0.91910 0.98730 0.95904 1.61749 1.04770 1.53578 1.02448 1.22667 0.95535 0.97766 0.92555 1.23570 1.02659 0.94091 1.05784 1.23061 0.99715 0.99118 0.99060 1.22504 0.98170 0.98087 0.89841 1.21445 0.87741 1.00207 0.90551 0.93933 0.95092 0.90363 0.90147 0.94085 0.91213 0.89818 0.95172 0.95706 0.92601 0.90759 0.89046 0.93573 0.89845 0.86342 0.88255 0.88906 0.88601 0.88556 0.93662 0.89636 0.88698 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 101.05 1.11 1.68 16 2 O -0.37 -7.51 8.76 -54.45 -0.48 -7.99 16 3 C 0.03 0.59 6.02 37.16 0.22 0.82 16 4 C 0.14 2.40 5.84 -4.04 -0.02 2.37 16 5 N -0.98 -19.61 2.80 -115.66 -0.32 -19.94 16 6 C 0.23 5.18 4.19 -5.19 -0.02 5.16 16 7 C -0.53 -14.51 8.94 -34.44 -0.31 -14.81 16 8 H 0.08 2.51 7.01 -52.49 -0.37 2.14 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 11 Si 0.87 20.65 27.47 -169.99 -4.67 15.98 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 15 S 2.78 55.99 5.98 -107.50 -0.64 55.34 16 16 O -0.96 -23.37 15.89 -57.17 -0.91 -24.27 16 17 O -0.96 -20.52 14.06 -65.29 -0.92 -21.44 16 18 N -1.02 -15.58 3.38 -112.97 -0.38 -15.97 16 19 C 0.13 1.60 6.56 -3.36 -0.02 1.58 16 20 C 0.04 0.39 4.28 -3.46 -0.01 0.37 16 21 N -0.50 -5.47 4.85 -226.05 -1.10 -6.57 16 22 C 0.02 0.22 6.10 -67.72 -0.41 -0.19 16 23 C -0.22 -1.87 9.58 -26.70 -0.26 -2.12 16 24 C -0.17 -1.35 9.93 -26.70 -0.27 -1.62 16 25 C 0.04 0.51 5.60 -3.70 -0.02 0.48 16 26 C 0.13 1.76 6.53 -3.61 -0.02 1.73 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.69 6.25 -51.93 -0.32 1.37 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.02 7.61 -51.93 -0.40 0.63 16 33 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 34 H 0.03 0.70 6.67 -51.93 -0.35 0.36 16 35 H 0.03 0.53 7.43 -51.93 -0.39 0.14 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.11 7.21 -51.93 -0.37 0.74 16 39 H 0.05 0.51 7.21 -51.93 -0.37 0.14 16 40 H 0.08 0.75 6.34 -51.93 -0.33 0.42 16 41 H 0.12 1.00 8.02 -51.93 -0.42 0.58 16 42 H 0.10 0.87 5.99 -51.93 -0.31 0.56 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.77 7.22 -51.93 -0.38 0.39 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 48 H 0.09 1.45 7.22 -51.92 -0.37 1.08 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -34.73 389.77 -11.08 -45.81 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.18 Total: 1.97 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.13 Total: -2.58 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.03 Total: -68.69 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -2.30 Total: -53.70 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -0.64 Total: 55.34 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.73 -11.08 -45.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331533617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.453 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds