Wall clock time and date at job start Wed Apr 1 2020 04:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99697 * 2 1 4 4 C 1.53000 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 294.99516 * 4 3 2 6 6 C 1.46502 * 120.00345 * 275.00289 * 5 4 3 7 7 C 1.50697 * 109.47079 * 85.00200 * 6 5 4 8 8 H 1.08000 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99754 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99674 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00100 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46920 * 90.00615 * 11 9 7 13 13 H 1.48502 * 109.46849 * 210.00337 * 11 9 7 14 14 H 1.48493 * 109.47130 * 330.00506 * 11 9 7 15 15 S 1.65605 * 119.99782 * 95.00317 * 5 4 3 16 16 O 1.42099 * 106.40321 * 203.53813 * 15 5 4 17 17 O 1.42097 * 106.40157 * 336.45932 * 15 5 4 18 18 N 1.65600 * 107.21849 * 90.00219 * 15 5 4 19 19 C 1.47089 * 120.87617 * 269.71967 * 18 15 5 20 20 C 1.53696 * 108.27464 * 128.75423 * 19 18 15 21 21 N 1.46902 * 109.25807 * 54.08274 * 20 19 18 22 22 C 1.46898 * 111.00293 * 172.60742 * 21 20 19 23 23 C 1.52997 * 117.50065 * 13.04769 * 22 21 20 24 24 C 1.52992 * 117.49718 * 304.38766 * 22 21 20 25 25 C 1.46904 * 111.26849 * 296.75611 * 21 20 19 26 26 C 1.47072 * 120.88731 * 89.99713 * 18 15 5 27 27 H 1.08999 * 109.46836 * 299.99784 * 1 2 3 28 28 H 1.08998 * 109.47394 * 60.00226 * 1 2 3 29 29 H 1.08995 * 109.46929 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47416 * 60.00374 * 3 2 1 31 31 H 1.09001 * 109.47100 * 300.00056 * 3 2 1 32 32 H 1.09002 * 109.47398 * 54.99843 * 4 3 2 33 33 H 1.09001 * 109.47194 * 175.00023 * 4 3 2 34 34 H 1.08998 * 109.47222 * 205.00373 * 6 5 4 35 35 H 1.09000 * 109.46517 * 324.99960 * 6 5 4 36 36 H 0.97002 * 120.00059 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.62771 * 248.51902 * 19 18 15 38 38 H 1.08995 * 109.63024 * 9.10347 * 19 18 15 39 39 H 1.09000 * 109.65389 * 294.08133 * 20 19 18 40 40 H 1.08992 * 109.42206 * 173.94622 * 20 19 18 41 41 H 1.09005 * 115.54700 * 158.71779 * 22 21 20 42 42 H 1.09006 * 117.49506 * 0.02562 * 23 22 21 43 43 H 1.09002 * 117.50407 * 145.01484 * 23 22 21 44 44 H 1.09006 * 117.49885 * 214.97549 * 24 22 21 45 45 H 1.08996 * 117.50328 * 359.97438 * 24 22 21 46 46 H 1.09001 * 109.49190 * 303.14400 * 25 21 20 47 47 H 1.08997 * 109.51790 * 183.07615 * 25 21 20 48 48 H 1.09008 * 109.62445 * 350.89956 * 26 18 15 49 49 H 1.09005 * 109.62951 * 111.27977 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5642 1.2509 6 6 4.1827 1.3883 2.4445 7 6 2.8708 1.5671 3.1641 8 1 1.9732 1.1126 2.7714 9 6 2.8162 2.3118 4.3232 10 7 1.6712 2.4682 4.9509 11 14 4.3687 3.0984 5.0019 12 1 4.5248 4.4597 4.4293 13 1 4.2704 3.1917 6.4807 14 1 5.5447 2.2693 4.6353 15 16 4.2424 -1.0691 1.3166 16 8 4.1065 -1.4433 2.6806 17 8 3.4689 -1.6438 0.2722 18 7 5.8293 -1.3239 0.9178 19 6 6.2299 -1.5474 -0.4798 20 6 7.3778 -0.5811 -0.8125 21 7 8.4525 -0.7469 0.1752 22 6 9.6404 0.0296 -0.2039 23 6 9.4791 1.0717 -1.3125 24 6 10.2404 -0.2275 -1.5876 25 6 7.9965 -0.3865 1.5244 26 6 6.8747 -1.3388 1.9521 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 -0.8427 33 1 3.9785 2.1766 -0.0902 34 1 4.8962 0.8974 3.1063 35 1 4.5715 2.3632 2.1500 36 1 1.6328 2.9918 5.7666 37 1 6.5662 -2.5768 -0.6041 38 1 5.3837 -1.3535 -1.1387 39 1 7.0127 0.4456 -0.7838 40 1 7.7615 -0.8033 -1.8082 41 1 10.3294 0.2615 0.6084 42 1 8.4913 1.1813 -1.7603 43 1 10.0622 1.9889 -1.2299 44 1 11.3242 -0.1644 -1.6858 45 1 9.7541 -0.9731 -2.2165 46 1 7.6227 0.6374 1.5205 47 1 8.8286 -0.4673 2.2237 48 1 6.4549 -1.0069 2.9018 49 1 7.2693 -2.3492 2.0595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331533617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:51 Heat of formation + Delta-G solvation = -89.198599 kcal Electronic energy + Delta-G solvation = -31593.974826 eV Core-core repulsion = 27490.870961 eV Total energy + Delta-G solvation = -4103.103865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.45664 -39.04320 -38.22539 -37.50976 -37.02339 -36.71410 -34.51613 -33.60545 -32.09122 -31.22909 -28.97582 -27.26429 -27.04773 -24.91690 -24.19473 -23.33849 -23.17557 -22.38828 -21.07470 -19.62676 -19.11502 -18.82409 -18.25546 -17.62823 -17.24638 -16.95617 -16.59555 -16.36554 -16.20476 -16.00224 -15.59816 -15.54114 -15.03949 -14.95214 -14.82129 -14.42618 -14.10170 -14.05597 -13.77956 -13.62400 -13.42135 -13.07512 -12.97941 -12.91896 -12.82880 -12.78988 -12.52025 -12.38293 -12.28619 -12.24478 -12.03677 -12.02247 -11.90310 -11.79617 -11.74935 -11.49970 -11.14411 -10.74850 -10.44669 -10.11901 -9.74985 -9.06574 -8.24366 -6.28236 -0.34223 1.35345 1.40335 1.48907 2.04700 2.37116 2.58824 2.73455 3.02046 3.08939 3.15555 3.41436 3.66726 3.89386 3.99974 4.05495 4.09593 4.14764 4.25465 4.28461 4.30492 4.32387 4.34808 4.49352 4.50807 4.55348 4.61588 4.66119 4.73815 4.78590 4.80681 4.83932 4.87208 4.88520 4.92361 5.05387 5.08689 5.12075 5.15820 5.30738 5.36605 5.52931 5.54645 5.87373 6.04727 6.13793 6.35692 6.39881 6.76092 7.33629 8.92752 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.004860 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.170883 B = 5760.520931 C = 7148.103501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.029 3.971 4 C 0.135 3.865 5 N -0.987 5.987 6 C 0.236 3.764 7 C -0.529 4.529 8 H 0.034 0.966 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.938 3.062 12 H -0.255 1.255 13 H -0.288 1.288 14 H -0.240 1.240 15 S 2.787 3.213 16 O -1.015 7.015 17 O -0.982 6.982 18 N -1.008 6.008 19 C 0.123 3.877 20 C 0.042 3.958 21 N -0.508 5.508 22 C 0.010 3.990 23 C -0.221 4.221 24 C -0.162 4.162 25 C 0.049 3.951 26 C 0.120 3.880 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.029 0.971 35 H 0.053 0.947 36 H 0.265 0.735 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.037 0.963 47 H 0.105 0.895 48 H 0.075 0.925 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.276 -1.997 -15.789 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C -0.049 4.049 4 C 0.009 3.991 5 N -0.827 5.827 6 C 0.112 3.888 7 C -0.568 4.568 8 H 0.052 0.948 9 C -0.190 4.190 10 N -0.591 5.591 11 Si 0.761 3.239 12 H -0.180 1.180 13 H -0.214 1.214 14 H -0.163 1.163 15 S 2.797 3.203 16 O -0.999 6.999 17 O -0.966 6.966 18 N -0.850 5.850 19 C -0.002 4.002 20 C -0.087 4.087 21 N -0.231 5.231 22 C -0.099 4.099 23 C -0.260 4.260 24 C -0.200 4.200 25 C -0.080 4.080 26 C -0.005 4.005 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.144 0.856 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.115 0.885 46 H 0.055 0.945 47 H 0.123 0.877 48 H 0.094 0.906 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.773 -3.272 -15.399 23.004 hybrid contribution -0.590 1.675 0.948 2.013 sum 16.183 -1.597 -14.452 21.755 Atomic orbital electron populations 1.22790 0.81161 1.02839 0.99977 1.88013 1.20082 1.28308 1.95412 1.23253 0.95732 0.85039 1.00883 1.21409 0.91989 1.01056 0.84625 1.57500 1.81159 1.26629 1.17404 1.19203 0.95125 0.91988 0.82520 1.21699 0.95187 1.31242 1.08672 0.94802 1.25873 0.99573 0.96879 0.96655 1.70076 1.27728 1.42136 1.19110 0.85859 0.80372 0.79993 0.77706 1.17968 1.21441 1.16299 1.01681 0.73186 0.73316 0.72148 1.93538 1.86088 1.82691 1.37580 1.93555 1.68025 1.76551 1.58424 1.58321 1.24928 1.86750 1.14980 1.21780 0.97809 1.00851 0.79803 1.22681 0.91241 0.97959 0.96839 1.61751 1.05205 1.54189 1.01929 1.22773 0.95107 0.98492 0.93478 1.23592 1.02767 0.94520 1.05106 1.23121 1.00479 0.98623 0.97764 1.22430 0.97812 0.96681 0.91062 1.21611 0.87799 1.01655 0.89463 0.96057 0.91736 0.89499 0.94122 0.90346 0.88703 0.86672 0.95287 0.92883 0.92637 0.89751 0.88859 0.93701 0.87759 0.85566 0.88542 0.88261 0.87321 0.88535 0.94511 0.87673 0.90621 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 11.01 113.37 1.25 2.25 16 2 O -0.40 -16.47 8.76 -130.61 -1.14 -17.61 16 3 C 0.03 1.05 6.02 71.98 0.43 1.48 16 4 C 0.13 4.28 5.84 86.38 0.50 4.79 16 5 N -0.99 -38.94 2.80 -519.85 -1.46 -40.39 16 6 C 0.24 10.62 4.19 85.63 0.36 10.98 16 7 C -0.53 -30.11 8.94 25.60 0.23 -29.89 16 8 H 0.03 2.20 7.01 -2.91 -0.02 2.18 16 9 C 0.01 0.43 5.47 84.65 0.46 0.89 16 10 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 11 Si 0.94 42.22 27.47 68.60 1.88 44.11 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 13 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 15 S 2.79 113.01 5.98 -56.49 -0.34 112.68 16 16 O -1.02 -50.99 15.89 -128.00 -2.03 -53.03 16 17 O -0.98 -41.97 14.06 -120.24 -1.69 -43.66 16 18 N -1.01 -29.66 3.38 -511.32 -1.73 -31.39 16 19 C 0.12 2.76 6.56 86.50 0.57 3.33 16 20 C 0.04 0.76 4.28 86.54 0.37 1.13 16 21 N -0.51 -9.44 4.85 -869.10 -4.21 -13.65 16 22 C 0.01 0.16 6.10 44.91 0.27 0.43 16 23 C -0.22 -2.94 9.58 30.62 0.29 -2.64 16 24 C -0.16 -1.96 9.93 30.61 0.30 -1.66 16 25 C 0.05 1.03 5.60 86.38 0.48 1.51 16 26 C 0.12 3.18 6.53 86.35 0.56 3.74 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.04 1.79 6.25 -2.39 -0.01 1.77 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.09 2.55 7.61 -2.39 -0.02 2.53 16 33 H 0.12 2.91 8.00 -2.39 -0.02 2.89 16 34 H 0.03 1.32 6.67 -2.39 -0.02 1.31 16 35 H 0.05 2.11 7.43 -2.39 -0.02 2.09 16 36 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 2.07 7.21 -2.39 -0.02 2.05 16 39 H 0.04 0.84 7.21 -2.39 -0.02 0.82 16 40 H 0.10 1.47 6.34 -2.39 -0.02 1.45 16 41 H 0.13 1.68 8.02 -2.38 -0.02 1.66 16 42 H 0.10 1.35 5.99 -2.38 -0.01 1.34 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.10 1.18 7.22 -2.39 -0.02 1.17 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.11 1.77 8.04 -2.39 -0.02 1.75 16 48 H 0.08 2.30 7.22 -2.38 -0.02 2.28 16 49 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -79.64 389.77 -3.45 -83.09 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.88 Total: 22.99 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 6.09 Total: -3.66 kcal Atomic # 7 Polarization: -137.80 SS G_CDS: -7.10 Total: -144.90 kcal Atomic # 8 Polarization: -109.43 SS G_CDS: -4.87 Total: -114.30 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.11 kcal Atomic # 16 Polarization: 113.01 SS G_CDS: -0.34 Total: 112.68 kcal Total: -79.64 -3.45 -83.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331533617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.111 kcal (2) G-P(sol) polarization free energy of solvation -79.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds