Wall clock time and date at job start Wed Apr 1 2020 04:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42093 * 110.54367 * 2 1 4 4 O 1.42106 * 110.53868 * 223.24938 * 2 1 3 5 5 N 1.65602 * 104.45111 * 111.62784 * 2 1 3 6 6 C 1.46499 * 119.99875 * 64.99562 * 5 2 1 7 7 C 1.53007 * 109.46733 * 165.00154 * 6 5 2 8 8 C 1.52996 * 109.47228 * 185.24953 * 7 6 5 9 9 H 1.09001 * 109.58761 * 58.81876 * 8 7 6 10 10 C 1.53201 * 109.58548 * 298.53862 * 8 7 6 11 11 C 1.53040 * 109.31090 * 185.57709 * 10 8 7 12 12 C 1.53041 * 109.53973 * 61.36151 * 11 10 8 13 13 C 1.53190 * 109.31253 * 298.63606 * 12 11 10 14 14 N 1.46924 * 109.59144 * 179.10525 * 8 7 6 15 15 C 1.34780 * 120.62396 * 353.39221 * 14 8 7 16 16 O 1.21578 * 120.00251 * 5.37813 * 15 14 8 17 17 N 1.34778 * 119.99746 * 185.36961 * 15 14 8 18 18 C 1.46498 * 120.00038 * 174.98797 * 17 15 14 19 19 C 1.53000 * 109.47209 * 180.02562 * 18 17 15 20 20 C 1.50699 * 109.47340 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99820 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00119 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00074 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00114 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46763 * 60.00523 * 24 22 20 26 26 H 1.48499 * 109.47315 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47466 * 300.00930 * 24 22 20 28 28 H 1.08995 * 109.47265 * 308.37063 * 1 2 3 29 29 H 1.08993 * 109.47152 * 68.37662 * 1 2 3 30 30 H 1.09008 * 109.46941 * 188.37198 * 1 2 3 31 31 H 0.96995 * 120.00027 * 245.00073 * 5 2 1 32 32 H 1.09005 * 109.47311 * 45.00599 * 6 5 2 33 33 H 1.08999 * 109.47644 * 285.00377 * 6 5 2 34 34 H 1.08999 * 109.46892 * 65.24631 * 7 6 5 35 35 H 1.09000 * 109.46853 * 305.24577 * 7 6 5 36 36 H 1.08991 * 109.49477 * 305.52749 * 10 8 7 37 37 H 1.08997 * 109.49795 * 65.62651 * 10 8 7 38 38 H 1.08997 * 109.45763 * 181.38778 * 11 10 8 39 39 H 1.09004 * 109.46348 * 301.35657 * 11 10 8 40 40 H 1.09008 * 109.49363 * 58.59013 * 12 11 10 41 41 H 1.09004 * 109.49756 * 178.68007 * 12 11 10 42 42 H 1.09001 * 109.58397 * 174.42021 * 13 12 11 43 43 H 1.08997 * 109.58334 * 294.70122 * 13 12 11 44 44 H 0.97006 * 119.99539 * 354.99008 * 17 15 14 45 45 H 1.09002 * 109.46837 * 299.99759 * 18 17 15 46 46 H 1.09001 * 109.47391 * 60.00153 * 18 17 15 47 47 H 1.08997 * 109.47102 * 300.00005 * 19 18 17 48 48 H 1.09001 * 109.46926 * 59.99737 * 19 18 17 49 49 H 0.97000 * 120.00117 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9118 5 7 2.2273 -0.5911 1.4907 6 6 1.8908 -1.9707 1.8507 7 6 2.6876 -2.3832 3.0901 8 6 2.4364 -3.8624 3.3889 9 1 2.7325 -4.4643 2.5297 10 6 0.9486 -4.0818 3.6812 11 6 0.7265 -5.5327 4.1146 12 6 1.5166 -5.8109 5.3954 13 6 3.0107 -5.6111 5.1225 14 7 3.2171 -4.2668 4.5661 15 6 4.1027 -3.4194 5.1266 16 8 4.1918 -2.2769 4.7206 17 7 4.8895 -3.8387 6.1374 18 6 5.9271 -2.9542 6.6734 19 6 6.6712 -3.6675 7.8041 20 6 7.7390 -2.7578 8.3550 21 1 7.8731 -1.7696 7.9405 22 6 8.5439 -3.1868 9.3889 23 7 8.3802 -4.3900 9.8940 24 14 9.8679 -2.0595 10.0714 25 1 9.2405 -0.8199 10.5958 26 1 10.5901 -2.7517 11.1688 27 1 10.8259 -1.7107 8.9917 28 1 -0.3633 0.6379 0.8057 29 1 -0.3633 0.3787 -0.9553 30 1 -0.3633 -1.0168 0.1496 31 1 2.6921 -0.0238 2.1255 32 1 2.1394 -2.6335 1.0218 33 1 0.8243 -2.0407 2.0645 34 1 2.3714 -1.7815 3.9421 35 1 3.7506 -2.2248 2.9079 36 1 0.6320 -3.4111 4.4798 37 1 0.3672 -3.8777 2.7821 38 1 -0.3349 -5.6980 4.2994 39 1 1.0665 -6.2035 3.3256 40 1 1.1945 -5.1238 6.1780 41 1 1.3394 -6.8374 5.7165 42 1 3.5687 -5.7110 6.0536 43 1 3.3548 -6.3590 4.4083 44 1 4.7688 -4.7262 6.5100 45 1 6.6305 -2.6976 5.8812 46 1 5.4659 -2.0447 7.0586 47 1 5.9681 -3.9245 8.5963 48 1 7.1325 -4.5767 7.4185 49 1 8.9468 -4.6919 10.6212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345810233.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:15 Heat of formation + Delta-G solvation = -98.723688 kcal Electronic energy + Delta-G solvation = -29163.639593 eV Core-core repulsion = 25060.122690 eV Total energy + Delta-G solvation = -4103.516904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60324 -37.71472 -37.34936 -36.28461 -36.11626 -34.93548 -33.25515 -32.69219 -32.17685 -29.86003 -29.39372 -28.42404 -25.37757 -24.39159 -23.92459 -21.79252 -21.25889 -20.70446 -19.73712 -19.41832 -17.99904 -17.31656 -16.76116 -16.51548 -16.43474 -15.96150 -15.62603 -15.14765 -14.89887 -14.64797 -14.53774 -14.26751 -14.09411 -13.84330 -13.65798 -13.57043 -13.42923 -13.30554 -12.82566 -12.75421 -12.36485 -12.29124 -12.26928 -12.12989 -11.88590 -11.63562 -11.35674 -11.24139 -11.16398 -11.09801 -10.99452 -10.84663 -10.73801 -10.63226 -10.30278 -9.69794 -9.62899 -9.35640 -8.98085 -8.63172 -8.45570 -8.19630 -6.09408 -4.12066 -0.01922 2.44869 2.84291 3.31553 3.35262 3.38920 3.50716 3.53308 3.88211 4.16908 4.35514 4.42376 4.54721 4.58857 4.60224 4.62974 4.77755 4.82675 5.01010 5.05532 5.08664 5.23898 5.27148 5.27723 5.34322 5.42998 5.53000 5.62424 5.66903 5.68323 5.80370 5.81124 6.05512 6.23889 6.26469 6.39458 6.43738 6.72657 6.76782 6.78720 7.01971 7.16150 7.54743 7.62392 7.89479 8.24281 8.36195 8.91801 8.97767 9.52728 11.02192 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.002362 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.366339 B =11853.991523 C =14057.873511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.615 3.385 3 O -0.961 6.961 4 O -0.959 6.959 5 N -1.114 6.114 6 C 0.104 3.896 7 C -0.114 4.114 8 C 0.168 3.832 9 H 0.070 0.930 10 C -0.136 4.136 11 C -0.119 4.119 12 C -0.136 4.136 13 C 0.111 3.889 14 N -0.632 5.632 15 C 0.702 3.298 16 O -0.589 6.589 17 N -0.740 5.740 18 C 0.140 3.860 19 C 0.014 3.986 20 C -0.521 4.521 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.895 5.895 24 Si 0.897 3.103 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.275 1.275 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.422 0.578 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.391 0.609 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.021 0.979 48 H 0.021 0.979 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.131 -1.552 -16.627 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.706 3.294 3 O -0.951 6.951 4 O -0.948 6.948 5 N -0.875 5.875 6 C -0.023 4.023 7 C -0.153 4.153 8 C 0.063 3.937 9 H 0.088 0.912 10 C -0.175 4.175 11 C -0.156 4.156 12 C -0.174 4.174 13 C -0.012 4.012 14 N -0.370 5.370 15 C 0.404 3.596 16 O -0.468 6.468 17 N -0.395 5.395 18 C 0.017 3.983 19 C -0.024 4.024 20 C -0.559 4.559 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.534 5.534 24 Si 0.725 3.275 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.257 0.743 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.227 0.773 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.039 0.961 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.447 -0.677 -17.582 27.741 hybrid contribution 0.102 0.036 1.354 1.359 sum -21.345 -0.641 -16.228 26.821 Atomic orbital electron populations 1.30547 1.28939 1.11507 1.11448 1.04664 0.77450 0.73835 0.73410 1.93624 1.77862 1.37818 1.85815 1.93615 1.76877 1.61835 1.62519 1.55465 1.74066 1.21540 1.36424 1.21593 0.98975 0.81696 1.00073 1.22354 1.02739 0.94202 0.95974 1.20973 0.89953 0.95982 0.86788 0.91168 1.22119 0.96080 0.97308 1.01977 1.21500 1.00021 0.96532 0.97561 1.21923 0.95009 1.02178 0.98291 1.21611 0.96457 0.84044 0.99109 1.47290 1.42842 1.14835 1.32082 1.16037 0.79058 0.84285 0.80259 1.90892 1.72771 1.17773 1.65374 1.45828 1.37151 1.19927 1.36592 1.21580 0.87234 0.92622 0.96857 1.19310 0.94950 0.96247 0.91884 1.21006 1.16471 1.00902 1.17563 0.92281 1.24991 0.97552 0.95224 0.96515 1.69943 1.39655 1.17622 1.26154 0.86570 0.81676 0.80687 0.78585 1.20113 1.21274 1.20098 0.85263 0.85504 0.85489 0.74257 0.90615 0.92342 0.89615 0.87834 0.91222 0.90822 0.91794 0.91735 0.91370 0.90726 0.90040 0.91438 0.77349 0.92855 0.92748 0.96088 0.96067 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.84 10.89 101.05 1.10 -1.74 16 2 S 2.62 21.97 6.10 -107.50 -0.66 21.31 16 3 O -0.96 -11.75 18.08 -57.54 -1.04 -12.79 16 4 O -0.96 -11.50 17.50 -57.54 -1.01 -12.51 16 5 N -1.11 -9.45 5.89 -10.61 -0.06 -9.52 16 6 C 0.10 0.84 5.67 -4.04 -0.02 0.81 16 7 C -0.11 -1.27 3.27 -26.73 -0.09 -1.36 16 8 C 0.17 1.67 3.00 -67.60 -0.20 1.47 16 9 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 10 C -0.14 -1.01 4.89 -26.61 -0.13 -1.14 16 11 C -0.12 -0.79 5.88 -26.69 -0.16 -0.94 16 12 C -0.14 -1.04 6.08 -26.61 -0.16 -1.20 16 13 C 0.11 1.06 6.38 -3.70 -0.02 1.04 16 14 N -0.63 -7.71 2.98 -170.89 -0.51 -8.22 16 15 C 0.70 11.54 8.21 -86.91 -0.71 10.82 16 16 O -0.59 -11.09 11.75 5.30 0.06 -11.02 16 17 N -0.74 -12.77 5.46 -65.23 -0.36 -13.13 16 18 C 0.14 2.94 5.62 -4.04 -0.02 2.92 16 19 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 20 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 24 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.13 0.35 8.14 -51.92 -0.42 -0.08 16 31 H 0.42 3.72 8.62 -34.47 -0.30 3.42 16 32 H 0.08 0.59 7.69 -51.93 -0.40 0.20 16 33 H 0.06 0.30 6.89 -51.93 -0.36 -0.05 16 34 H 0.09 1.10 7.10 -51.93 -0.37 0.73 16 35 H 0.10 1.50 6.37 -51.93 -0.33 1.17 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.39 6.91 -51.93 -0.36 0.03 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.80 5.66 -51.93 -0.29 0.51 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.39 5.97 5.97 -40.82 -0.24 5.72 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -36.50 396.70 -10.96 -47.46 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.11 Total: 3.60 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.97 Total: -2.25 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.19 Total: -56.11 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.98 Total: -36.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 21.97 SS G_CDS: -0.66 Total: 21.31 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.50 -10.96 -47.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345810233.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.261 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds