Wall clock time and date at job start Wed Apr 1 2020 04:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42093 * 110.54367 * 2 1 4 4 O 1.42106 * 110.53868 * 223.24938 * 2 1 3 5 5 N 1.65602 * 104.45111 * 111.62784 * 2 1 3 6 6 C 1.46499 * 119.99875 * 64.99562 * 5 2 1 7 7 C 1.53007 * 109.46733 * 165.00154 * 6 5 2 8 8 C 1.52996 * 109.47228 * 185.24953 * 7 6 5 9 9 H 1.09001 * 109.58761 * 58.81876 * 8 7 6 10 10 C 1.53201 * 109.58548 * 298.53862 * 8 7 6 11 11 C 1.53040 * 109.31090 * 185.57709 * 10 8 7 12 12 C 1.53041 * 109.53973 * 61.36151 * 11 10 8 13 13 C 1.53190 * 109.31253 * 298.63606 * 12 11 10 14 14 N 1.46924 * 109.59144 * 179.10525 * 8 7 6 15 15 C 1.34780 * 120.62396 * 353.39221 * 14 8 7 16 16 O 1.21578 * 120.00251 * 5.37813 * 15 14 8 17 17 N 1.34778 * 119.99746 * 185.36961 * 15 14 8 18 18 C 1.46498 * 120.00038 * 174.98797 * 17 15 14 19 19 C 1.53000 * 109.47209 * 180.02562 * 18 17 15 20 20 C 1.50699 * 109.47340 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99820 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00119 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00074 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00114 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46763 * 60.00523 * 24 22 20 26 26 H 1.48499 * 109.47315 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47466 * 300.00930 * 24 22 20 28 28 H 1.08995 * 109.47265 * 308.37063 * 1 2 3 29 29 H 1.08993 * 109.47152 * 68.37662 * 1 2 3 30 30 H 1.09008 * 109.46941 * 188.37198 * 1 2 3 31 31 H 0.96995 * 120.00027 * 245.00073 * 5 2 1 32 32 H 1.09005 * 109.47311 * 45.00599 * 6 5 2 33 33 H 1.08999 * 109.47644 * 285.00377 * 6 5 2 34 34 H 1.08999 * 109.46892 * 65.24631 * 7 6 5 35 35 H 1.09000 * 109.46853 * 305.24577 * 7 6 5 36 36 H 1.08991 * 109.49477 * 305.52749 * 10 8 7 37 37 H 1.08997 * 109.49795 * 65.62651 * 10 8 7 38 38 H 1.08997 * 109.45763 * 181.38778 * 11 10 8 39 39 H 1.09004 * 109.46348 * 301.35657 * 11 10 8 40 40 H 1.09008 * 109.49363 * 58.59013 * 12 11 10 41 41 H 1.09004 * 109.49756 * 178.68007 * 12 11 10 42 42 H 1.09001 * 109.58397 * 174.42021 * 13 12 11 43 43 H 1.08997 * 109.58334 * 294.70122 * 13 12 11 44 44 H 0.97006 * 119.99539 * 354.99008 * 17 15 14 45 45 H 1.09002 * 109.46837 * 299.99759 * 18 17 15 46 46 H 1.09001 * 109.47391 * 60.00153 * 18 17 15 47 47 H 1.08997 * 109.47102 * 300.00005 * 19 18 17 48 48 H 1.09001 * 109.46926 * 59.99737 * 19 18 17 49 49 H 0.97000 * 120.00117 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9118 5 7 2.2273 -0.5911 1.4907 6 6 1.8908 -1.9707 1.8507 7 6 2.6876 -2.3832 3.0901 8 6 2.4364 -3.8624 3.3889 9 1 2.7325 -4.4643 2.5297 10 6 0.9486 -4.0818 3.6812 11 6 0.7265 -5.5327 4.1146 12 6 1.5166 -5.8109 5.3954 13 6 3.0107 -5.6111 5.1225 14 7 3.2171 -4.2668 4.5661 15 6 4.1027 -3.4194 5.1266 16 8 4.1918 -2.2769 4.7206 17 7 4.8895 -3.8387 6.1374 18 6 5.9271 -2.9542 6.6734 19 6 6.6712 -3.6675 7.8041 20 6 7.7390 -2.7578 8.3550 21 1 7.8731 -1.7696 7.9405 22 6 8.5439 -3.1868 9.3889 23 7 8.3802 -4.3900 9.8940 24 14 9.8679 -2.0595 10.0714 25 1 9.2405 -0.8199 10.5958 26 1 10.5901 -2.7517 11.1688 27 1 10.8259 -1.7107 8.9917 28 1 -0.3633 0.6379 0.8057 29 1 -0.3633 0.3787 -0.9553 30 1 -0.3633 -1.0168 0.1496 31 1 2.6921 -0.0238 2.1255 32 1 2.1394 -2.6335 1.0218 33 1 0.8243 -2.0407 2.0645 34 1 2.3714 -1.7815 3.9421 35 1 3.7506 -2.2248 2.9079 36 1 0.6320 -3.4111 4.4798 37 1 0.3672 -3.8777 2.7821 38 1 -0.3349 -5.6980 4.2994 39 1 1.0665 -6.2035 3.3256 40 1 1.1945 -5.1238 6.1780 41 1 1.3394 -6.8374 5.7165 42 1 3.5687 -5.7110 6.0536 43 1 3.3548 -6.3590 4.4083 44 1 4.7688 -4.7262 6.5100 45 1 6.6305 -2.6976 5.8812 46 1 5.4659 -2.0447 7.0586 47 1 5.9681 -3.9245 8.5963 48 1 7.1325 -4.5767 7.4185 49 1 8.9468 -4.6919 10.6212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345810233.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:14 Heat of formation + Delta-G solvation = -127.349899 kcal Electronic energy + Delta-G solvation = -29164.880919 eV Core-core repulsion = 25060.122690 eV Total energy + Delta-G solvation = -4104.758229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69530 -38.76140 -38.15128 -37.09094 -36.94926 -36.42402 -34.92738 -33.71923 -33.20229 -31.14918 -30.25064 -29.17565 -26.94993 -25.49693 -24.79077 -23.16609 -22.19366 -21.96724 -20.61256 -20.32181 -18.88616 -18.51574 -18.16969 -17.51929 -17.20971 -17.07363 -16.80450 -16.48550 -15.91412 -15.86184 -15.52394 -15.32763 -15.08941 -14.80933 -14.47419 -14.35963 -14.22977 -14.01132 -13.95283 -13.80559 -13.69380 -13.19319 -13.18292 -13.10727 -12.93474 -12.90376 -12.73826 -12.52671 -12.39153 -12.20271 -11.97452 -11.86178 -11.77772 -11.62117 -11.49396 -11.41882 -11.39554 -10.59901 -10.39407 -10.19379 -9.94294 -9.35993 -8.24216 -6.34496 -0.63243 1.41324 1.43736 1.51486 1.70738 1.84193 2.20851 2.40448 2.93527 3.03892 3.10401 3.30849 3.81672 3.86670 3.97043 4.00107 4.13037 4.14742 4.23089 4.34946 4.36665 4.40625 4.47135 4.52784 4.61542 4.66115 4.72779 4.86768 4.93321 4.95928 4.99817 5.03663 5.10039 5.19404 5.27231 5.32400 5.35505 5.47327 5.55411 5.58997 5.59765 5.80356 5.82458 6.00388 6.06628 6.17450 6.78328 7.05196 7.34738 7.65888 8.87478 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.002362 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.366339 B =11853.991523 C =14057.873511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.617 3.383 3 O -1.009 7.009 4 O -1.003 7.003 5 N -1.121 6.121 6 C 0.105 3.895 7 C -0.106 4.106 8 C 0.159 3.841 9 H 0.085 0.915 10 C -0.130 4.130 11 C -0.116 4.116 12 C -0.132 4.132 13 C 0.103 3.897 14 N -0.625 5.625 15 C 0.694 3.306 16 O -0.618 6.618 17 N -0.740 5.740 18 C 0.163 3.837 19 C 0.026 3.974 20 C -0.547 4.547 21 H 0.058 0.942 22 C 0.008 3.992 23 N -0.926 5.926 24 Si 0.964 3.036 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.269 1.269 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.418 0.582 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.400 0.600 45 H 0.040 0.960 46 H 0.042 0.958 47 H 0.007 0.993 48 H 0.006 0.994 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.859 -2.327 -17.457 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.714 3.286 3 O -0.999 6.999 4 O -0.993 6.993 5 N -0.881 5.881 6 C -0.022 4.022 7 C -0.145 4.145 8 C 0.055 3.945 9 H 0.103 0.897 10 C -0.168 4.168 11 C -0.153 4.153 12 C -0.170 4.170 13 C -0.019 4.019 14 N -0.362 5.362 15 C 0.396 3.604 16 O -0.500 6.500 17 N -0.397 5.397 18 C 0.039 3.961 19 C -0.012 4.012 20 C -0.585 4.585 21 H 0.076 0.924 22 C -0.191 4.191 23 N -0.565 5.565 24 Si 0.789 3.211 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.194 1.194 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.252 0.748 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.238 0.762 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.170 -1.499 -18.437 30.436 hybrid contribution 0.853 0.232 1.578 1.808 sum -23.317 -1.267 -16.859 28.801 Atomic orbital electron populations 1.30282 1.22244 1.14022 1.13492 1.04349 0.79692 0.72110 0.72470 1.93559 1.80363 1.39776 1.86238 1.93554 1.79445 1.62504 1.63787 1.55408 1.74876 1.21806 1.35981 1.21679 1.00654 0.81393 0.98453 1.22072 1.00668 0.95056 0.96708 1.21286 0.91721 0.95207 0.86246 0.89749 1.22105 0.93774 0.97867 1.03084 1.21518 1.00843 0.95930 0.97023 1.21910 0.93322 1.02967 0.98784 1.21872 0.98210 0.82757 0.99093 1.47392 1.41562 1.15156 1.32128 1.16234 0.79597 0.84525 0.80004 1.90901 1.73732 1.19308 1.66057 1.45567 1.36877 1.19905 1.37348 1.21002 0.87572 0.92282 0.95271 1.19102 0.94304 0.95468 0.92326 1.21424 1.17537 1.01394 1.18145 0.92383 1.25861 0.99781 0.96741 0.96748 1.70048 1.40680 1.19172 1.26631 0.85511 0.78791 0.78794 0.78024 1.19344 1.20500 1.19441 0.83321 0.83546 0.82759 0.74813 0.90193 0.88271 0.91819 0.92035 0.92369 0.87679 0.90051 0.90507 0.92795 0.88813 0.90946 0.89702 0.76217 0.94114 0.93977 0.97516 0.97543 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.88 10.89 113.37 1.23 -1.65 16 2 S 2.62 42.50 6.10 -56.49 -0.34 42.16 16 3 O -1.01 -25.47 18.08 -127.65 -2.31 -27.78 16 4 O -1.00 -24.05 17.50 -127.65 -2.23 -26.29 16 5 N -1.12 -18.83 5.89 -187.48 -1.10 -19.93 16 6 C 0.10 1.52 5.67 86.38 0.49 2.01 16 7 C -0.11 -2.38 3.27 30.60 0.10 -2.28 16 8 C 0.16 2.96 3.00 44.98 0.13 3.09 16 9 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 10 C -0.13 -1.51 4.89 30.67 0.15 -1.36 16 11 C -0.12 -1.10 5.88 30.62 0.18 -0.92 16 12 C -0.13 -1.71 6.08 30.67 0.19 -1.52 16 13 C 0.10 1.84 6.38 86.36 0.55 2.39 16 14 N -0.62 -15.05 2.98 -812.83 -2.42 -17.47 16 15 C 0.69 23.65 8.21 179.05 1.47 25.12 16 16 O -0.62 -24.61 11.75 -3.96 -0.05 -24.66 16 17 N -0.74 -26.60 5.46 -478.54 -2.62 -29.22 16 18 C 0.16 7.20 5.62 86.38 0.49 7.68 16 19 C 0.03 1.31 5.09 29.85 0.15 1.46 16 20 C -0.55 -30.88 9.11 25.60 0.23 -30.64 16 21 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 22 C 0.01 0.42 5.46 84.65 0.46 0.89 16 23 N -0.93 -54.45 13.29 21.44 0.28 -54.16 16 24 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.42 7.87 8.62 -96.75 -0.83 7.04 16 32 H 0.08 1.11 7.69 -2.38 -0.02 1.10 16 33 H 0.10 0.64 6.89 -2.39 -0.02 0.62 16 34 H 0.06 1.70 7.10 -2.39 -0.02 1.68 16 35 H 0.06 1.91 6.37 -2.39 -0.02 1.89 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.59 6.91 -2.39 -0.02 0.58 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 1.41 5.66 -2.39 -0.01 1.40 16 43 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.40 12.66 5.97 -92.70 -0.55 12.10 16 45 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -83.10 396.70 -3.36 -86.46 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.43 Total: 20.62 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 5.83 Total: 4.27 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.86 Total: -120.78 kcal Atomic # 8 Polarization: -74.13 SS G_CDS: -4.59 Total: -78.72 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 42.50 SS G_CDS: -0.34 Total: 42.16 kcal Total: -83.10 -3.36 -86.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345810233.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.893 kcal (2) G-P(sol) polarization free energy of solvation -83.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds