Wall clock time and date at job start Wed Apr 1 2020 04:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42101 * 110.54338 * 2 1 4 4 O 1.42098 * 110.54154 * 223.24909 * 2 1 3 5 5 N 1.65602 * 104.44875 * 111.62417 * 2 1 3 6 6 C 1.46502 * 119.99810 * 65.00033 * 5 2 1 7 7 H 1.08996 * 109.47347 * 24.99808 * 6 5 2 8 8 C 1.53000 * 109.46969 * 264.99540 * 6 5 2 9 9 C 1.52995 * 109.47378 * 300.00495 * 8 6 5 10 10 C 1.52997 * 109.46921 * 299.99634 * 9 8 6 11 11 C 1.53000 * 109.47272 * 60.00255 * 10 9 8 12 12 C 1.52999 * 109.47016 * 300.00101 * 11 10 9 13 13 H 1.08997 * 109.46995 * 299.99890 * 12 11 10 14 14 N 1.46501 * 109.47394 * 179.97438 * 12 11 10 15 15 C 1.34778 * 119.99996 * 84.99485 * 14 12 11 16 16 O 1.21590 * 119.99986 * 0.02562 * 15 14 12 17 17 N 1.34774 * 119.99963 * 179.97438 * 15 14 12 18 18 C 1.46498 * 120.00067 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47341 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47415 * 180.02562 * 19 18 17 21 21 C 1.50695 * 109.47057 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00538 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99661 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00186 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99863 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00044 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00037 * 25 23 21 29 29 H 1.09001 * 109.47038 * 308.37549 * 1 2 3 30 30 H 1.08997 * 109.47277 * 68.37076 * 1 2 3 31 31 H 1.08999 * 109.47670 * 188.37609 * 1 2 3 32 32 H 0.96999 * 120.00167 * 244.99617 * 5 2 1 33 33 H 1.09008 * 109.47159 * 60.00401 * 8 6 5 34 34 H 1.08997 * 109.47186 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.47333 * 59.99635 * 9 8 6 36 36 H 1.09005 * 109.47313 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.47223 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.47406 * 299.99921 * 10 9 8 39 39 H 1.08991 * 109.47436 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.47178 * 59.99526 * 11 10 9 41 41 H 0.97003 * 119.99794 * 265.00184 * 14 12 11 42 42 H 0.97003 * 119.99826 * 0.02562 * 17 15 14 43 43 H 1.09002 * 109.46847 * 60.00131 * 18 17 15 44 44 H 1.08998 * 109.47311 * 300.00295 * 18 17 15 45 45 H 1.09002 * 109.47302 * 60.00092 * 19 18 17 46 46 H 1.08998 * 109.46899 * 300.00230 * 19 18 17 47 47 H 1.09002 * 109.46997 * 59.99676 * 20 19 18 48 48 H 1.09000 * 109.46625 * 300.00101 * 20 19 18 49 49 H 0.97001 * 119.99697 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4908 6 6 1.8907 -1.9706 1.8508 7 1 1.7966 -2.5698 0.9452 8 6 0.5654 -1.9895 2.6149 9 6 0.6975 -1.1484 3.8861 10 6 1.8036 -1.7293 4.7692 11 6 3.1290 -1.7104 4.0052 12 6 2.9969 -2.5514 2.7340 13 1 2.7465 -3.5779 3.0018 14 7 4.2658 -2.5329 2.0020 15 6 5.2417 -3.4054 2.3229 16 8 5.0688 -4.2081 3.2196 17 7 6.4088 -3.3887 1.6492 18 6 7.4694 -4.3373 1.9976 19 6 8.6784 -4.1072 1.0887 20 6 9.7858 -5.0984 1.4521 21 6 10.9768 -4.8713 0.5572 22 1 10.9468 -4.0977 -0.1958 23 6 12.1048 -5.6512 0.6998 24 7 12.1416 -6.5930 1.6171 25 14 13.5809 -5.3703 -0.4099 26 1 14.4903 -4.3779 0.2176 27 1 13.1208 -4.8575 -1.7255 28 1 14.3054 -6.6519 -0.6042 29 1 -0.3633 0.6380 0.8057 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3634 -1.0167 0.1497 32 1 2.6921 -0.0237 2.1256 33 1 -0.2228 -1.5757 1.9857 34 1 0.3152 -3.0159 2.8832 35 1 0.9478 -0.1220 3.6182 36 1 -0.2469 -1.1615 4.4303 37 1 1.8981 -1.1298 5.6747 38 1 1.5532 -2.7558 5.0372 39 1 3.9171 -2.1238 4.6345 40 1 3.3794 -0.6839 3.7373 41 1 4.4036 -1.8926 1.2864 42 1 6.5466 -2.7485 0.9336 43 1 7.1037 -5.3556 1.8656 44 1 7.7630 -4.1886 3.0367 45 1 9.0440 -3.0889 1.2211 46 1 8.3851 -4.2557 0.0495 47 1 9.4200 -6.1166 1.3195 48 1 10.0791 -4.9503 2.4914 49 1 11.3752 -6.7386 2.1936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352899670.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:55 Heat of formation + Delta-G solvation = -130.852115 kcal Electronic energy + Delta-G solvation = -29150.550552 eV Core-core repulsion = 25045.640455 eV Total energy + Delta-G solvation = -4104.910097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56836 -39.01767 -37.54983 -36.41701 -35.56443 -34.29037 -34.04497 -33.51233 -31.21258 -30.50140 -29.83901 -28.92037 -26.12929 -23.39626 -23.12665 -22.42992 -20.87394 -20.75511 -20.47697 -19.47060 -18.52582 -18.01452 -17.03557 -16.76884 -16.67506 -16.29641 -15.65241 -15.37481 -15.34668 -14.98490 -14.44379 -14.16268 -14.10543 -13.81025 -13.76036 -13.71005 -13.31502 -13.19483 -13.15429 -12.86925 -12.73790 -12.55956 -12.44494 -11.99770 -11.92365 -11.65878 -11.59489 -11.57778 -11.32423 -11.03014 -10.82876 -10.75837 -10.72081 -10.22023 -10.10364 -10.03076 -9.96263 -9.75087 -9.21656 -8.63768 -8.54252 -8.30204 -6.33927 -4.03270 -0.24961 2.15937 2.74941 3.29409 3.33604 3.45445 3.49270 3.64977 3.65931 3.99786 4.18094 4.20798 4.24658 4.37659 4.48234 4.56452 4.57233 4.70890 4.75276 4.96145 4.97785 5.03645 5.08915 5.26052 5.31520 5.43314 5.54085 5.57543 5.59431 5.67216 5.75117 5.76352 5.92603 5.98014 6.11184 6.39681 6.46659 6.47214 6.54210 6.76048 6.91823 7.04928 7.40111 7.52657 8.13115 8.22392 8.48588 8.73225 8.90659 9.69131 11.06940 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.002058 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.369377 B =13602.521781 C =14940.629929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.609 3.391 3 O -0.957 6.957 4 O -0.951 6.951 5 N -1.114 6.114 6 C 0.139 3.861 7 H 0.102 0.898 8 C -0.141 4.141 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.132 4.132 12 C 0.167 3.833 13 H 0.102 0.898 14 N -0.746 5.746 15 C 0.702 3.298 16 O -0.594 6.594 17 N -0.741 5.741 18 C 0.136 3.864 19 C -0.114 4.114 20 C 0.011 3.989 21 C -0.602 4.602 22 H 0.049 0.951 23 C 0.013 3.987 24 N -0.913 5.913 25 Si 1.072 2.928 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.284 1.284 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.420 0.580 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.396 0.604 42 H 0.395 0.605 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.010 0.990 48 H 0.010 0.990 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.073 15.666 1.697 35.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.700 3.300 3 O -0.948 6.948 4 O -0.941 6.941 5 N -0.875 5.875 6 C 0.031 3.969 7 H 0.120 0.880 8 C -0.180 4.180 9 C -0.157 4.157 10 C -0.156 4.156 11 C -0.171 4.171 12 C 0.060 3.940 13 H 0.120 0.880 14 N -0.402 5.402 15 C 0.402 3.598 16 O -0.472 6.472 17 N -0.395 5.395 18 C 0.012 3.988 19 C -0.152 4.152 20 C -0.027 4.027 21 C -0.641 4.641 22 H 0.067 0.933 23 C -0.190 4.190 24 N -0.549 5.549 25 Si 0.901 3.099 26 H -0.215 1.215 27 H -0.215 1.215 28 H -0.210 1.210 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.256 0.744 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.231 0.769 42 H 0.228 0.772 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -30.166 14.504 1.372 33.500 hybrid contribution -1.946 1.355 0.248 2.384 sum -32.111 15.859 1.620 35.851 Atomic orbital electron populations 1.30647 1.28495 1.11695 1.11680 1.04909 0.77665 0.73997 0.73388 1.93642 1.77864 1.37610 1.85657 1.93658 1.76808 1.61688 1.61935 1.55773 1.73907 1.21256 1.36528 1.21205 0.94589 0.81675 0.99391 0.87981 1.22162 0.96009 1.02221 0.97648 1.21522 0.99102 0.99519 0.95577 1.21515 0.94103 1.01808 0.98179 1.21965 0.98404 1.00108 0.96655 1.20887 0.81714 1.00951 0.90483 0.88049 1.45131 1.15250 1.39249 1.40545 1.15997 0.80361 0.81265 0.82192 1.90910 1.81076 1.41695 1.33516 1.45369 1.14796 1.40160 1.39225 1.21487 0.86078 0.91593 0.99608 1.21754 0.94183 1.01236 0.98035 1.19154 0.92937 0.93724 0.96850 1.22048 1.00745 1.21036 1.20245 0.93259 1.25870 1.01201 0.93405 0.98565 1.70748 1.33747 1.31086 1.19361 0.83498 0.75138 0.76140 0.75144 1.21478 1.21509 1.20996 0.85121 0.85316 0.85185 0.74378 0.91080 0.89823 0.91625 0.91582 0.91536 0.91383 0.90560 0.91873 0.76947 0.77190 0.92033 0.92073 0.92596 0.92544 0.97155 0.97190 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -1.42 10.04 101.05 1.01 -0.41 16 2 S 2.61 15.08 6.08 -107.50 -0.65 14.42 16 3 O -0.96 -9.12 18.08 -57.54 -1.04 -10.16 16 4 O -0.95 -9.21 17.39 -57.54 -1.00 -10.21 16 5 N -1.11 -5.18 4.06 -4.89 -0.02 -5.20 16 6 C 0.14 0.72 2.62 -67.93 -0.18 0.54 16 7 H 0.10 0.54 7.48 -51.93 -0.39 0.15 16 8 C -0.14 -0.45 5.60 -26.73 -0.15 -0.60 16 9 C -0.12 -0.42 5.77 -26.73 -0.15 -0.58 16 10 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 11 C -0.13 -1.00 5.31 -26.73 -0.14 -1.14 16 12 C 0.17 1.38 2.22 -67.93 -0.15 1.23 16 13 H 0.10 0.99 7.58 -51.93 -0.39 0.60 16 14 N -0.75 -7.94 5.05 -58.68 -0.30 -8.23 16 15 C 0.70 10.62 8.53 -86.92 -0.74 9.88 16 16 O -0.59 -11.16 16.01 5.29 0.08 -11.08 16 17 N -0.74 -11.17 5.56 -65.23 -0.36 -11.53 16 18 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 19 C -0.11 -2.32 5.27 -26.73 -0.14 -2.46 16 20 C 0.01 0.28 4.28 -27.89 -0.12 0.16 16 21 C -0.60 -17.35 9.11 -34.44 -0.31 -17.67 16 22 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 23 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 24 N -0.91 -28.46 13.65 55.43 0.76 -27.70 16 25 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.13 0.09 8.14 -51.92 -0.42 -0.34 16 30 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.13 0.11 6.77 -51.92 -0.35 -0.25 16 32 H 0.42 1.72 6.78 -34.47 -0.23 1.49 16 33 H 0.07 0.09 5.78 -51.92 -0.30 -0.21 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.20 7.44 -51.93 -0.39 -0.19 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.41 6.51 -51.93 -0.34 0.07 16 41 H 0.40 3.65 8.15 -40.82 -0.33 3.31 16 42 H 0.39 5.00 8.49 -40.82 -0.35 4.65 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 48 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 49 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -39.32 398.41 -11.01 -50.34 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.05 Total: 1.85 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.35 Total: -9.09 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.08 Total: -52.67 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -1.96 Total: -31.46 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Atomic # 16 Polarization: 15.08 SS G_CDS: -0.65 Total: 14.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.32 -11.01 -50.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352899670.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.513 kcal (2) G-P(sol) polarization free energy of solvation -39.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds