Wall clock time and date at job start Wed Apr 1 2020 04:20:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81400 * 1
3 3 O 1.42101 * 110.54338 * 2 1
4 4 O 1.42098 * 110.54154 * 223.24909 * 2 1 3
5 5 N 1.65602 * 104.44875 * 111.62417 * 2 1 3
6 6 C 1.46502 * 119.99810 * 65.00033 * 5 2 1
7 7 H 1.08996 * 109.47347 * 24.99808 * 6 5 2
8 8 C 1.53000 * 109.46969 * 264.99540 * 6 5 2
9 9 C 1.52995 * 109.47378 * 300.00495 * 8 6 5
10 10 C 1.52997 * 109.46921 * 299.99634 * 9 8 6
11 11 C 1.53000 * 109.47272 * 60.00255 * 10 9 8
12 12 C 1.52999 * 109.47016 * 300.00101 * 11 10 9
13 13 H 1.08997 * 109.46995 * 299.99890 * 12 11 10
14 14 N 1.46501 * 109.47394 * 179.97438 * 12 11 10
15 15 C 1.34778 * 119.99996 * 84.99485 * 14 12 11
16 16 O 1.21590 * 119.99986 * 0.02562 * 15 14 12
17 17 N 1.34774 * 119.99963 * 179.97438 * 15 14 12
18 18 C 1.46498 * 120.00067 * 180.02562 * 17 15 14
19 19 C 1.52997 * 109.47341 * 180.02562 * 18 17 15
20 20 C 1.52999 * 109.47415 * 180.02562 * 19 18 17
21 21 C 1.50695 * 109.47057 * 180.02562 * 20 19 18
22 22 H 1.07999 * 120.00538 * 359.97438 * 21 20 19
23 23 C 1.37881 * 119.99661 * 179.97438 * 21 20 19
24 24 N 1.31520 * 120.00186 * 359.97438 * 23 21 20
25 25 Si 1.86798 * 120.00030 * 179.97438 * 23 21 20
26 26 H 1.48506 * 109.47297 * 89.99863 * 25 23 21
27 27 H 1.48503 * 109.47261 * 330.00044 * 25 23 21
28 28 H 1.48500 * 109.47454 * 210.00037 * 25 23 21
29 29 H 1.09001 * 109.47038 * 308.37549 * 1 2 3
30 30 H 1.08997 * 109.47277 * 68.37076 * 1 2 3
31 31 H 1.08999 * 109.47670 * 188.37609 * 1 2 3
32 32 H 0.96999 * 120.00167 * 244.99617 * 5 2 1
33 33 H 1.09008 * 109.47159 * 60.00401 * 8 6 5
34 34 H 1.08997 * 109.47186 * 180.02562 * 8 6 5
35 35 H 1.08997 * 109.47333 * 59.99635 * 9 8 6
36 36 H 1.09005 * 109.47313 * 179.97438 * 9 8 6
37 37 H 1.09004 * 109.47223 * 179.97438 * 10 9 8
38 38 H 1.09004 * 109.47406 * 299.99921 * 10 9 8
39 39 H 1.08991 * 109.47436 * 179.97438 * 11 10 9
40 40 H 1.09004 * 109.47178 * 59.99526 * 11 10 9
41 41 H 0.97003 * 119.99794 * 265.00184 * 14 12 11
42 42 H 0.97003 * 119.99826 * 0.02562 * 17 15 14
43 43 H 1.09002 * 109.46847 * 60.00131 * 18 17 15
44 44 H 1.08998 * 109.47311 * 300.00295 * 18 17 15
45 45 H 1.09002 * 109.47302 * 60.00092 * 19 18 17
46 46 H 1.08998 * 109.46899 * 300.00230 * 19 18 17
47 47 H 1.09002 * 109.46997 * 59.99676 * 20 19 18
48 48 H 1.09000 * 109.46625 * 300.00101 * 20 19 18
49 49 H 0.97001 * 119.99697 * 359.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3127 1.3306 0.0000
4 8 2.3126 -0.9692 -0.9117
5 7 2.2272 -0.5910 1.4908
6 6 1.8907 -1.9706 1.8508
7 1 1.7966 -2.5698 0.9452
8 6 0.5654 -1.9895 2.6149
9 6 0.6975 -1.1484 3.8861
10 6 1.8036 -1.7293 4.7692
11 6 3.1290 -1.7104 4.0052
12 6 2.9969 -2.5514 2.7340
13 1 2.7465 -3.5779 3.0018
14 7 4.2658 -2.5329 2.0020
15 6 5.2417 -3.4054 2.3229
16 8 5.0688 -4.2081 3.2196
17 7 6.4088 -3.3887 1.6492
18 6 7.4694 -4.3373 1.9976
19 6 8.6784 -4.1072 1.0887
20 6 9.7858 -5.0984 1.4521
21 6 10.9768 -4.8713 0.5572
22 1 10.9468 -4.0977 -0.1958
23 6 12.1048 -5.6512 0.6998
24 7 12.1416 -6.5930 1.6171
25 14 13.5809 -5.3703 -0.4099
26 1 14.4903 -4.3779 0.2176
27 1 13.1208 -4.8575 -1.7255
28 1 14.3054 -6.6519 -0.6042
29 1 -0.3633 0.6380 0.8057
30 1 -0.3634 0.3788 -0.9553
31 1 -0.3634 -1.0167 0.1497
32 1 2.6921 -0.0237 2.1256
33 1 -0.2228 -1.5757 1.9857
34 1 0.3152 -3.0159 2.8832
35 1 0.9478 -0.1220 3.6182
36 1 -0.2469 -1.1615 4.4303
37 1 1.8981 -1.1298 5.6747
38 1 1.5532 -2.7558 5.0372
39 1 3.9171 -2.1238 4.6345
40 1 3.3794 -0.6839 3.7373
41 1 4.4036 -1.8926 1.2864
42 1 6.5466 -2.7485 0.9336
43 1 7.1037 -5.3556 1.8656
44 1 7.7630 -4.1886 3.0367
45 1 9.0440 -3.0889 1.2211
46 1 8.3851 -4.2557 0.0495
47 1 9.4200 -6.1166 1.3195
48 1 10.0791 -4.9503 2.4914
49 1 11.3752 -6.7386 2.1936
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000352899670.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:20:54
Heat of formation + Delta-G solvation = -163.035294 kcal
Electronic energy + Delta-G solvation = -29151.946119 eV
Core-core repulsion = 25045.640455 eV
Total energy + Delta-G solvation = -4106.305664 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.47108 -39.88876 -38.12413 -37.18060 -36.99066 -35.44338 -35.19672 -34.54200
-32.89300 -31.01692 -30.10375 -29.69519 -27.90520 -25.06031 -23.67418 -23.35000
-22.53876 -21.73149 -21.24336 -19.92148 -19.41502 -18.93783 -18.73004 -17.72339
-17.23269 -16.97429 -16.84824 -16.16506 -16.04306 -15.71274 -15.64784 -15.54924
-15.46209 -15.04089 -14.78617 -14.24446 -14.02122 -13.91096 -13.73940 -13.69549
-13.58682 -13.54068 -13.22394 -13.13558 -13.02563 -12.61488 -12.58462 -12.49397
-12.23664 -12.05774 -12.01324 -11.88347 -11.81244 -11.76762 -11.43292 -11.33905
-11.18963 -10.70693 -10.55004 -10.44290 -10.35648 -9.81207 -8.69524 -6.40280
-0.64987 1.52938 1.62066 1.62684 1.78854 1.80269 2.09720 2.57278
2.91477 3.15749 3.21924 3.28467 3.50087 3.78163 3.99855 4.03229
4.05088 4.09972 4.10660 4.19591 4.26405 4.36445 4.41032 4.42292
4.51701 4.62050 4.78699 4.80324 4.83401 4.93230 4.94735 5.00923
5.09066 5.21825 5.22217 5.32951 5.33420 5.40433 5.44330 5.46635
5.52665 5.59481 5.92526 5.98740 6.06167 6.18235 6.56141 7.02257
7.42341 7.52665 8.71435
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.015830 B = 0.002058 C = 0.001874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1768.369377 B =13602.521781 C =14940.629929
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.655 4.655
2 S 2.613 3.387
3 O -1.001 7.001
4 O -0.998 6.998
5 N -1.110 6.110
6 C 0.146 3.854
7 H 0.104 0.896
8 C -0.139 4.139
9 C -0.117 4.117
10 C -0.116 4.116
11 C -0.128 4.128
12 C 0.160 3.840
13 H 0.084 0.916
14 N -0.729 5.729
15 C 0.699 3.301
16 O -0.633 6.633
17 N -0.735 5.735
18 C 0.152 3.848
19 C -0.096 4.096
20 C 0.009 3.991
21 C -0.618 4.618
22 H 0.056 0.944
23 C -0.043 4.043
24 N -0.939 5.939
25 Si 1.123 2.877
26 H -0.272 1.272
27 H -0.267 1.267
28 H -0.284 1.284
29 H 0.156 0.844
30 H 0.142 0.858
31 H 0.152 0.848
32 H 0.423 0.577
33 H 0.101 0.899
34 H 0.086 0.914
35 H 0.076 0.924
36 H 0.080 0.920
37 H 0.068 0.932
38 H 0.060 0.940
39 H 0.039 0.961
40 H 0.075 0.925
41 H 0.406 0.594
42 H 0.409 0.591
43 H 0.048 0.952
44 H 0.048 0.952
45 H 0.066 0.934
46 H 0.065 0.935
47 H -0.010 1.010
48 H -0.010 1.010
49 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -34.597 17.721 0.506 38.874
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.808 4.808
2 S 2.710 3.290
3 O -0.991 6.991
4 O -0.988 6.988
5 N -0.871 5.871
6 C 0.039 3.961
7 H 0.122 0.878
8 C -0.178 4.178
9 C -0.154 4.154
10 C -0.154 4.154
11 C -0.167 4.167
12 C 0.053 3.947
13 H 0.102 0.898
14 N -0.385 5.385
15 C 0.398 3.602
16 O -0.515 6.515
17 N -0.391 5.391
18 C 0.027 3.973
19 C -0.134 4.134
20 C -0.029 4.029
21 C -0.655 4.655
22 H 0.074 0.926
23 C -0.240 4.240
24 N -0.577 5.577
25 Si 0.943 3.057
26 H -0.197 1.197
27 H -0.192 1.192
28 H -0.209 1.209
29 H 0.174 0.826
30 H 0.161 0.839
31 H 0.170 0.830
32 H 0.260 0.740
33 H 0.120 0.880
34 H 0.105 0.895
35 H 0.095 0.905
36 H 0.099 0.901
37 H 0.087 0.913
38 H 0.078 0.922
39 H 0.057 0.943
40 H 0.094 0.906
41 H 0.241 0.759
42 H 0.245 0.755
43 H 0.066 0.934
44 H 0.066 0.934
45 H 0.084 0.916
46 H 0.084 0.916
47 H 0.009 0.991
48 H 0.009 0.991
49 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -32.699 16.616 0.166 36.679
hybrid contribution -1.274 0.720 0.667 1.608
sum -33.973 17.336 0.833 38.150
Atomic orbital electron populations
1.30454 1.22779 1.13940 1.13666 1.04498 0.79545 0.72321 0.72668
1.93586 1.80074 1.39348 1.86104 1.93599 1.79215 1.62528 1.63502
1.55564 1.74563 1.20999 1.35975 1.21172 0.94330 0.81572 0.99073
0.87803 1.22215 0.95145 1.02779 0.97664 1.21530 0.98686 0.99880
0.95316 1.21506 0.93612 1.01728 0.98529 1.21899 0.98736 1.00186
0.95876 1.21130 0.81440 1.00625 0.91487 0.89824 1.45090 1.15024
1.37950 1.40409 1.16161 0.80805 0.81518 0.81689 1.90883 1.81828
1.43525 1.35266 1.45083 1.14277 1.39931 1.39762 1.21039 0.86196
0.91695 0.98361 1.21478 0.93152 1.00001 0.98729 1.19109 0.94206
0.94199 0.95399 1.22496 1.01664 1.20896 1.20480 0.92607 1.27525
1.04705 0.92642 0.99135 1.70888 1.33389 1.32771 1.20630 0.82871
0.71991 0.76518 0.74277 1.19736 1.19166 1.20928 0.82591 0.83942
0.83002 0.74019 0.88025 0.89523 0.90542 0.90103 0.91286 0.92165
0.94259 0.90638 0.75855 0.75545 0.93368 0.93363 0.91563 0.91641
0.99134 0.99132 0.93551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.65 0.10 10.04 113.37 1.14 1.24 16
2 S 2.61 25.69 6.08 -56.49 -0.34 25.34 16
3 O -1.00 -18.19 18.08 -127.65 -2.31 -20.49 16
4 O -1.00 -18.55 17.39 -127.65 -2.22 -20.77 16
5 N -1.11 -8.23 4.06 -169.39 -0.69 -8.92 16
6 C 0.15 1.24 2.62 44.99 0.12 1.36 16
7 H 0.10 0.90 7.48 -2.39 -0.02 0.88 16
8 C -0.14 -0.42 5.60 30.59 0.17 -0.25 16
9 C -0.12 -0.46 5.77 30.59 0.18 -0.28 16
10 C -0.12 -1.13 5.92 30.59 0.18 -0.95 16
11 C -0.13 -1.93 5.31 30.59 0.16 -1.76 16
12 C 0.16 2.60 2.22 44.99 0.10 2.70 16
13 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16
14 N -0.73 -15.55 5.05 -457.81 -2.31 -17.86 16
15 C 0.70 21.60 8.53 179.05 1.53 23.13 16
16 O -0.63 -24.85 16.01 -4.00 -0.06 -24.91 16
17 N -0.74 -22.26 5.56 -478.54 -2.66 -24.92 16
18 C 0.15 5.67 5.67 86.38 0.49 6.16 16
19 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16
20 C 0.01 0.46 4.28 29.85 0.13 0.58 16
21 C -0.62 -35.78 9.11 25.60 0.23 -35.55 16
22 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16
23 C -0.04 -2.55 5.46 84.65 0.46 -2.09 16
24 N -0.94 -59.83 13.65 21.45 0.29 -59.54 16
25 Si 1.12 51.05 29.90 68.60 2.05 53.10 16
26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16
28 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16
29 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16
30 H 0.14 -0.22 8.14 -2.39 -0.02 -0.24 16
31 H 0.15 -0.57 6.77 -2.39 -0.02 -0.59 16
32 H 0.42 2.76 6.78 -96.74 -0.66 2.11 16
33 H 0.10 -0.26 5.78 -2.38 -0.01 -0.28 16
34 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16
35 H 0.08 0.17 7.44 -2.39 -0.02 0.16 16
36 H 0.08 0.16 8.14 -2.38 -0.02 0.14 16
37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
38 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16
39 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16
40 H 0.08 0.92 6.51 -2.38 -0.02 0.90 16
41 H 0.41 7.27 8.15 -92.71 -0.76 6.51 16
42 H 0.41 10.05 8.49 -92.71 -0.79 9.26 16
43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16
44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16
45 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16
46 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16
47 H -0.01 -0.55 8.01 -2.39 -0.02 -0.57 16
48 H -0.01 -0.55 8.01 -2.39 -0.02 -0.56 16
49 H 0.26 16.51 7.22 -92.71 -0.67 15.84 16
Total: -1.00 -88.51 398.41 -4.32 -92.83
By element:
Atomic # 1 Polarization: 16.70 SS G_CDS: -1.12 Total: 15.58 kcal
Atomic # 6 Polarization: -14.49 SS G_CDS: 5.05 Total: -9.45 kcal
Atomic # 7 Polarization: -105.87 SS G_CDS: -5.37 Total: -111.23 kcal
Atomic # 8 Polarization: -61.59 SS G_CDS: -4.59 Total: -66.18 kcal
Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal
Atomic # 16 Polarization: 25.69 SS G_CDS: -0.34 Total: 25.34 kcal
Total: -88.51 -4.32 -92.83 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000352899670.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.203 kcal
(2) G-P(sol) polarization free energy of solvation -88.511 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.714 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.321 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.832 kcal
(6) G-S(sol) free energy of system = (1) + (5) -163.035 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds