Wall clock time and date at job start Wed Apr 1 2020 04:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42101 * 110.54338 * 2 1 4 4 O 1.42098 * 110.54154 * 223.24909 * 2 1 3 5 5 N 1.65602 * 104.44875 * 111.62417 * 2 1 3 6 6 C 1.46502 * 119.99810 * 65.00033 * 5 2 1 7 7 H 1.08996 * 109.47347 * 24.99808 * 6 5 2 8 8 C 1.53000 * 109.46969 * 264.99540 * 6 5 2 9 9 C 1.52995 * 109.47378 * 300.00495 * 8 6 5 10 10 C 1.52997 * 109.46921 * 299.99634 * 9 8 6 11 11 C 1.53000 * 109.47272 * 60.00255 * 10 9 8 12 12 C 1.52999 * 109.47016 * 300.00101 * 11 10 9 13 13 H 1.08997 * 109.46995 * 299.99890 * 12 11 10 14 14 N 1.46501 * 109.47394 * 179.97438 * 12 11 10 15 15 C 1.34778 * 119.99996 * 84.99485 * 14 12 11 16 16 O 1.21590 * 119.99986 * 0.02562 * 15 14 12 17 17 N 1.34774 * 119.99963 * 179.97438 * 15 14 12 18 18 C 1.46498 * 120.00067 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47341 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47415 * 180.02562 * 19 18 17 21 21 C 1.50695 * 109.47057 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00538 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99661 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00186 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99863 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00044 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00037 * 25 23 21 29 29 H 1.09001 * 109.47038 * 308.37549 * 1 2 3 30 30 H 1.08997 * 109.47277 * 68.37076 * 1 2 3 31 31 H 1.08999 * 109.47670 * 188.37609 * 1 2 3 32 32 H 0.96999 * 120.00167 * 244.99617 * 5 2 1 33 33 H 1.09008 * 109.47159 * 60.00401 * 8 6 5 34 34 H 1.08997 * 109.47186 * 180.02562 * 8 6 5 35 35 H 1.08997 * 109.47333 * 59.99635 * 9 8 6 36 36 H 1.09005 * 109.47313 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.47223 * 179.97438 * 10 9 8 38 38 H 1.09004 * 109.47406 * 299.99921 * 10 9 8 39 39 H 1.08991 * 109.47436 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.47178 * 59.99526 * 11 10 9 41 41 H 0.97003 * 119.99794 * 265.00184 * 14 12 11 42 42 H 0.97003 * 119.99826 * 0.02562 * 17 15 14 43 43 H 1.09002 * 109.46847 * 60.00131 * 18 17 15 44 44 H 1.08998 * 109.47311 * 300.00295 * 18 17 15 45 45 H 1.09002 * 109.47302 * 60.00092 * 19 18 17 46 46 H 1.08998 * 109.46899 * 300.00230 * 19 18 17 47 47 H 1.09002 * 109.46997 * 59.99676 * 20 19 18 48 48 H 1.09000 * 109.46625 * 300.00101 * 20 19 18 49 49 H 0.97001 * 119.99697 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4908 6 6 1.8907 -1.9706 1.8508 7 1 1.7966 -2.5698 0.9452 8 6 0.5654 -1.9895 2.6149 9 6 0.6975 -1.1484 3.8861 10 6 1.8036 -1.7293 4.7692 11 6 3.1290 -1.7104 4.0052 12 6 2.9969 -2.5514 2.7340 13 1 2.7465 -3.5779 3.0018 14 7 4.2658 -2.5329 2.0020 15 6 5.2417 -3.4054 2.3229 16 8 5.0688 -4.2081 3.2196 17 7 6.4088 -3.3887 1.6492 18 6 7.4694 -4.3373 1.9976 19 6 8.6784 -4.1072 1.0887 20 6 9.7858 -5.0984 1.4521 21 6 10.9768 -4.8713 0.5572 22 1 10.9468 -4.0977 -0.1958 23 6 12.1048 -5.6512 0.6998 24 7 12.1416 -6.5930 1.6171 25 14 13.5809 -5.3703 -0.4099 26 1 14.4903 -4.3779 0.2176 27 1 13.1208 -4.8575 -1.7255 28 1 14.3054 -6.6519 -0.6042 29 1 -0.3633 0.6380 0.8057 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3634 -1.0167 0.1497 32 1 2.6921 -0.0237 2.1256 33 1 -0.2228 -1.5757 1.9857 34 1 0.3152 -3.0159 2.8832 35 1 0.9478 -0.1220 3.6182 36 1 -0.2469 -1.1615 4.4303 37 1 1.8981 -1.1298 5.6747 38 1 1.5532 -2.7558 5.0372 39 1 3.9171 -2.1238 4.6345 40 1 3.3794 -0.6839 3.7373 41 1 4.4036 -1.8926 1.2864 42 1 6.5466 -2.7485 0.9336 43 1 7.1037 -5.3556 1.8656 44 1 7.7630 -4.1886 3.0367 45 1 9.0440 -3.0889 1.2211 46 1 8.3851 -4.2557 0.0495 47 1 9.4200 -6.1166 1.3195 48 1 10.0791 -4.9503 2.4914 49 1 11.3752 -6.7386 2.1936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352899670.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:54 Heat of formation + Delta-G solvation = -163.035294 kcal Electronic energy + Delta-G solvation = -29151.946119 eV Core-core repulsion = 25045.640455 eV Total energy + Delta-G solvation = -4106.305664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47108 -39.88876 -38.12413 -37.18060 -36.99066 -35.44338 -35.19672 -34.54200 -32.89300 -31.01692 -30.10375 -29.69519 -27.90520 -25.06031 -23.67418 -23.35000 -22.53876 -21.73149 -21.24336 -19.92148 -19.41502 -18.93783 -18.73004 -17.72339 -17.23269 -16.97429 -16.84824 -16.16506 -16.04306 -15.71274 -15.64784 -15.54924 -15.46209 -15.04089 -14.78617 -14.24446 -14.02122 -13.91096 -13.73940 -13.69549 -13.58682 -13.54068 -13.22394 -13.13558 -13.02563 -12.61488 -12.58462 -12.49397 -12.23664 -12.05774 -12.01324 -11.88347 -11.81244 -11.76762 -11.43292 -11.33905 -11.18963 -10.70693 -10.55004 -10.44290 -10.35648 -9.81207 -8.69524 -6.40280 -0.64987 1.52938 1.62066 1.62684 1.78854 1.80269 2.09720 2.57278 2.91477 3.15749 3.21924 3.28467 3.50087 3.78163 3.99855 4.03229 4.05088 4.09972 4.10660 4.19591 4.26405 4.36445 4.41032 4.42292 4.51701 4.62050 4.78699 4.80324 4.83401 4.93230 4.94735 5.00923 5.09066 5.21825 5.22217 5.32951 5.33420 5.40433 5.44330 5.46635 5.52665 5.59481 5.92526 5.98740 6.06167 6.18235 6.56141 7.02257 7.42341 7.52665 8.71435 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.002058 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.369377 B =13602.521781 C =14940.629929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.613 3.387 3 O -1.001 7.001 4 O -0.998 6.998 5 N -1.110 6.110 6 C 0.146 3.854 7 H 0.104 0.896 8 C -0.139 4.139 9 C -0.117 4.117 10 C -0.116 4.116 11 C -0.128 4.128 12 C 0.160 3.840 13 H 0.084 0.916 14 N -0.729 5.729 15 C 0.699 3.301 16 O -0.633 6.633 17 N -0.735 5.735 18 C 0.152 3.848 19 C -0.096 4.096 20 C 0.009 3.991 21 C -0.618 4.618 22 H 0.056 0.944 23 C -0.043 4.043 24 N -0.939 5.939 25 Si 1.123 2.877 26 H -0.272 1.272 27 H -0.267 1.267 28 H -0.284 1.284 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.423 0.577 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.406 0.594 42 H 0.409 0.591 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.065 0.935 47 H -0.010 1.010 48 H -0.010 1.010 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.597 17.721 0.506 38.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.710 3.290 3 O -0.991 6.991 4 O -0.988 6.988 5 N -0.871 5.871 6 C 0.039 3.961 7 H 0.122 0.878 8 C -0.178 4.178 9 C -0.154 4.154 10 C -0.154 4.154 11 C -0.167 4.167 12 C 0.053 3.947 13 H 0.102 0.898 14 N -0.385 5.385 15 C 0.398 3.602 16 O -0.515 6.515 17 N -0.391 5.391 18 C 0.027 3.973 19 C -0.134 4.134 20 C -0.029 4.029 21 C -0.655 4.655 22 H 0.074 0.926 23 C -0.240 4.240 24 N -0.577 5.577 25 Si 0.943 3.057 26 H -0.197 1.197 27 H -0.192 1.192 28 H -0.209 1.209 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.260 0.740 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.241 0.759 42 H 0.245 0.755 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.009 0.991 48 H 0.009 0.991 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -32.699 16.616 0.166 36.679 hybrid contribution -1.274 0.720 0.667 1.608 sum -33.973 17.336 0.833 38.150 Atomic orbital electron populations 1.30454 1.22779 1.13940 1.13666 1.04498 0.79545 0.72321 0.72668 1.93586 1.80074 1.39348 1.86104 1.93599 1.79215 1.62528 1.63502 1.55564 1.74563 1.20999 1.35975 1.21172 0.94330 0.81572 0.99073 0.87803 1.22215 0.95145 1.02779 0.97664 1.21530 0.98686 0.99880 0.95316 1.21506 0.93612 1.01728 0.98529 1.21899 0.98736 1.00186 0.95876 1.21130 0.81440 1.00625 0.91487 0.89824 1.45090 1.15024 1.37950 1.40409 1.16161 0.80805 0.81518 0.81689 1.90883 1.81828 1.43525 1.35266 1.45083 1.14277 1.39931 1.39762 1.21039 0.86196 0.91695 0.98361 1.21478 0.93152 1.00001 0.98729 1.19109 0.94206 0.94199 0.95399 1.22496 1.01664 1.20896 1.20480 0.92607 1.27525 1.04705 0.92642 0.99135 1.70888 1.33389 1.32771 1.20630 0.82871 0.71991 0.76518 0.74277 1.19736 1.19166 1.20928 0.82591 0.83942 0.83002 0.74019 0.88025 0.89523 0.90542 0.90103 0.91286 0.92165 0.94259 0.90638 0.75855 0.75545 0.93368 0.93363 0.91563 0.91641 0.99134 0.99132 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 0.10 10.04 113.37 1.14 1.24 16 2 S 2.61 25.69 6.08 -56.49 -0.34 25.34 16 3 O -1.00 -18.19 18.08 -127.65 -2.31 -20.49 16 4 O -1.00 -18.55 17.39 -127.65 -2.22 -20.77 16 5 N -1.11 -8.23 4.06 -169.39 -0.69 -8.92 16 6 C 0.15 1.24 2.62 44.99 0.12 1.36 16 7 H 0.10 0.90 7.48 -2.39 -0.02 0.88 16 8 C -0.14 -0.42 5.60 30.59 0.17 -0.25 16 9 C -0.12 -0.46 5.77 30.59 0.18 -0.28 16 10 C -0.12 -1.13 5.92 30.59 0.18 -0.95 16 11 C -0.13 -1.93 5.31 30.59 0.16 -1.76 16 12 C 0.16 2.60 2.22 44.99 0.10 2.70 16 13 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 14 N -0.73 -15.55 5.05 -457.81 -2.31 -17.86 16 15 C 0.70 21.60 8.53 179.05 1.53 23.13 16 16 O -0.63 -24.85 16.01 -4.00 -0.06 -24.91 16 17 N -0.74 -22.26 5.56 -478.54 -2.66 -24.92 16 18 C 0.15 5.67 5.67 86.38 0.49 6.16 16 19 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 20 C 0.01 0.46 4.28 29.85 0.13 0.58 16 21 C -0.62 -35.78 9.11 25.60 0.23 -35.55 16 22 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 23 C -0.04 -2.55 5.46 84.65 0.46 -2.09 16 24 N -0.94 -59.83 13.65 21.45 0.29 -59.54 16 25 Si 1.12 51.05 29.90 68.60 2.05 53.10 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 29 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.14 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.15 -0.57 6.77 -2.39 -0.02 -0.59 16 32 H 0.42 2.76 6.78 -96.74 -0.66 2.11 16 33 H 0.10 -0.26 5.78 -2.38 -0.01 -0.28 16 34 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 0.17 7.44 -2.39 -0.02 0.16 16 36 H 0.08 0.16 8.14 -2.38 -0.02 0.14 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.92 6.51 -2.38 -0.02 0.90 16 41 H 0.41 7.27 8.15 -92.71 -0.76 6.51 16 42 H 0.41 10.05 8.49 -92.71 -0.79 9.26 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 47 H -0.01 -0.55 8.01 -2.39 -0.02 -0.57 16 48 H -0.01 -0.55 8.01 -2.39 -0.02 -0.56 16 49 H 0.26 16.51 7.22 -92.71 -0.67 15.84 16 Total: -1.00 -88.51 398.41 -4.32 -92.83 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -1.12 Total: 15.58 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 5.05 Total: -9.45 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -5.37 Total: -111.23 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -4.59 Total: -66.18 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Atomic # 16 Polarization: 25.69 SS G_CDS: -0.34 Total: 25.34 kcal Total: -88.51 -4.32 -92.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352899670.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.203 kcal (2) G-P(sol) polarization free energy of solvation -88.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds