Wall clock time and date at job start Wed Apr 1 2020 04:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48496 * 109.47197 * 270.00234 * 3 2 1 5 5 H 1.48494 * 109.47242 * 30.00374 * 3 2 1 6 6 H 1.48500 * 109.46772 * 150.00501 * 3 2 1 7 7 C 1.38948 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00177 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99981 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00214 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99885 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.34781 * 120.00419 * 180.02562 * 13 12 10 15 15 O 1.21587 * 119.99363 * 5.08329 * 14 13 12 16 16 N 1.34773 * 120.00042 * 185.08239 * 14 13 12 17 17 C 1.47081 * 120.87863 * 175.00198 * 16 14 13 18 18 C 1.53236 * 108.52274 * 231.20856 * 17 16 14 19 19 N 1.46899 * 109.34067 * 306.17233 * 18 17 16 20 20 C 1.46903 * 111.00393 * 187.25352 * 19 18 17 21 21 C 1.50696 * 109.47045 * 169.99509 * 20 19 18 22 22 C 1.38227 * 119.61771 * 95.00172 * 21 20 19 23 23 C 1.38628 * 119.16552 * 180.27203 * 22 21 20 24 24 C 1.38677 * 118.41502 * 359.48121 * 23 22 21 25 25 C 1.38185 * 119.16533 * 0.47997 * 24 23 22 26 26 N 1.31858 * 119.62238 * 274.97654 * 21 20 19 27 27 C 1.46904 * 111.27150 * 63.10201 * 19 18 17 28 28 C 1.47074 * 120.88538 * 355.02713 * 16 14 13 29 29 H 0.97001 * 119.99854 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00009 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46728 * 60.00338 * 12 10 9 32 32 H 1.08995 * 109.47275 * 300.00480 * 12 10 9 33 33 H 0.97003 * 119.99871 * 0.02562 * 13 12 10 34 34 H 1.08998 * 109.62802 * 111.49936 * 17 16 14 35 35 H 1.09005 * 109.78957 * 351.00941 * 17 16 14 36 36 H 1.08996 * 109.49788 * 186.21077 * 18 17 16 37 37 H 1.09000 * 109.51915 * 66.14133 * 18 17 16 38 38 H 1.09002 * 109.46895 * 49.99380 * 20 19 18 39 39 H 1.08994 * 109.46978 * 289.99794 * 20 19 18 40 40 H 1.08003 * 120.41582 * 0.02562 * 22 21 20 41 41 H 1.07994 * 120.79492 * 179.72224 * 23 22 21 42 42 H 1.08004 * 120.41622 * 180.21331 * 24 23 22 43 43 H 1.07996 * 119.61480 * 179.76668 * 25 24 23 44 44 H 1.08999 * 109.48711 * 56.85635 * 27 19 18 45 45 H 1.08999 * 109.49319 * 176.94380 * 27 19 18 46 46 H 1.09004 * 109.62938 * 248.50184 * 28 16 14 47 47 H 1.09002 * 109.62786 * 8.88173 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1957 -5.9765 -0.0016 14 6 1.7465 -7.2472 -0.0027 15 8 0.5550 -7.4706 -0.0966 16 7 2.6180 -8.2701 0.1002 17 6 2.1434 -9.6579 0.2108 18 6 2.8280 -10.3119 1.4157 19 7 4.2837 -10.1615 1.2889 20 6 4.9845 -10.9219 2.3324 21 6 6.4605 -10.9473 2.0297 22 6 7.2936 -10.0108 2.6125 23 6 8.6490 -10.0393 2.3231 24 6 9.1197 -11.0200 1.4629 25 6 8.2268 -11.9236 0.9189 26 7 6.9426 -11.8630 1.2126 27 6 4.6775 -8.7464 1.3146 28 6 4.0687 -8.0283 0.1055 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6175 -4.9204 -0.8914 32 1 0.6167 -4.9209 0.8885 33 1 3.1494 -5.7992 -0.0012 34 1 2.3980 -10.2053 -0.6967 35 1 1.0628 -9.6681 0.3536 36 1 2.5733 -11.3712 1.4481 37 1 2.4909 -9.8286 2.3327 38 1 4.6011 -11.9420 2.3579 39 1 4.8200 -10.4477 3.2999 40 1 6.8929 -9.2637 3.2817 41 1 9.3230 -9.3175 2.7601 42 1 10.1702 -11.0742 1.2180 43 1 8.5849 -12.6879 0.2452 44 1 4.3146 -8.2846 2.2328 45 1 5.7641 -8.6705 1.2735 46 1 4.5084 -8.4191 -0.8121 47 1 4.2612 -6.9578 0.1767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358306399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:49 Heat of formation + Delta-G solvation = -4.581425 kcal Electronic energy + Delta-G solvation = -29715.473222 eV Core-core repulsion = 25512.887433 eV Total energy + Delta-G solvation = -4202.585789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75678 -40.19985 -38.57300 -37.88661 -34.94481 -34.50109 -33.72053 -32.82098 -32.06262 -31.38118 -31.15583 -28.71135 -27.26072 -25.24274 -24.42307 -24.11426 -23.58478 -22.12127 -21.29354 -19.67197 -19.39937 -18.40458 -17.87044 -17.19915 -16.64867 -16.27379 -16.03283 -15.75929 -15.64885 -15.45433 -15.15377 -14.78058 -14.61798 -14.41037 -14.34414 -14.01171 -13.79892 -13.62812 -13.53772 -13.34163 -13.02220 -12.59074 -12.20684 -12.18482 -12.05661 -11.85946 -11.63861 -11.56666 -11.46401 -11.23838 -11.13073 -10.46721 -10.32433 -10.21036 -9.94591 -9.74807 -9.64093 -9.40496 -9.00550 -8.72652 -8.63027 -8.36234 -8.10304 -6.51692 -3.93739 0.71083 0.93872 2.68255 3.11128 3.21486 3.24532 3.26892 3.38282 3.74601 3.77326 3.89477 3.98152 4.15069 4.35224 4.50257 4.64200 4.66674 4.75913 4.79372 4.84289 4.89336 5.00219 5.05784 5.16944 5.17573 5.20104 5.29721 5.32647 5.42024 5.48422 5.61863 5.67803 5.75345 5.81712 5.88044 5.91613 6.01580 6.08216 6.31605 6.43451 6.59106 6.69290 6.76028 7.07407 7.45561 7.68911 7.92060 8.15620 8.44871 8.77672 9.04235 9.39266 9.87071 10.65168 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.002042 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.879743 B =13711.162849 C =15344.375015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.709 3.291 15 O -0.596 6.596 16 N -0.633 5.633 17 C 0.137 3.863 18 C 0.043 3.957 19 N -0.527 5.527 20 C 0.104 3.896 21 C 0.138 3.862 22 C -0.168 4.168 23 C -0.074 4.074 24 C -0.176 4.176 25 C 0.100 3.900 26 N -0.466 5.466 27 C 0.038 3.962 28 C 0.116 3.884 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.405 0.595 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.155 0.845 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.981 -23.037 5.211 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.385 5.385 14 C 0.410 3.590 15 O -0.475 6.475 16 N -0.372 5.372 17 C 0.014 3.986 18 C -0.085 4.085 19 N -0.253 5.253 20 C -0.024 4.024 21 C 0.000 4.000 22 C -0.189 4.189 23 C -0.100 4.100 24 C -0.196 4.196 25 C -0.057 4.057 26 N -0.175 5.175 27 C -0.091 4.091 28 C -0.008 4.008 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.297 -23.768 4.337 27.110 hybrid contribution 0.814 1.983 1.133 2.425 sum 13.111 -21.785 5.470 26.008 Atomic orbital electron populations 1.69617 1.05996 1.28512 1.49301 1.25331 0.95678 0.99935 0.96832 0.85810 0.79195 0.80508 0.78489 1.20263 1.20808 1.19353 1.19718 0.93434 0.81993 1.48256 0.87705 1.41790 1.09505 1.04445 1.62629 1.19760 0.88280 0.85010 0.85481 1.90480 1.13777 1.86887 1.57444 1.20791 0.91270 0.84899 1.03135 1.44957 1.11243 1.03370 1.78924 1.15747 0.84777 0.80547 0.77894 1.90890 1.14222 1.83930 1.58424 1.47234 1.05487 1.06008 1.78431 1.21494 0.99827 0.79782 0.97520 1.22551 0.86571 1.01420 0.98000 1.61853 1.06336 1.09996 1.47069 1.20935 0.88520 1.00136 0.92778 1.21034 0.95826 0.90876 0.92300 1.22043 0.94483 1.00277 1.02076 1.21600 0.95473 0.97221 0.95704 1.22181 1.01515 0.96817 0.99079 1.22790 0.88468 0.97376 0.97072 1.67486 1.15191 1.22492 1.12371 1.22574 1.00880 0.87738 0.97919 1.21703 0.80218 1.00333 0.98499 0.91591 0.76998 0.89922 0.90128 0.75460 0.91026 0.88382 0.89217 0.94056 0.88689 0.92988 0.84934 0.84752 0.84821 0.82751 0.93859 0.89587 0.90620 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.64 5.29 -10.96 -0.06 -13.69 16 10 C 0.43 9.88 7.85 -10.98 -0.09 9.80 16 11 O -0.60 -15.26 15.24 5.55 0.08 -15.18 16 12 C 0.13 2.42 6.16 -5.19 -0.03 2.38 16 13 N -0.73 -12.68 5.44 -66.42 -0.36 -13.04 16 14 C 0.71 12.08 8.31 -86.92 -0.72 11.36 16 15 O -0.60 -11.89 15.83 5.29 0.08 -11.81 16 16 N -0.63 -8.48 3.01 -178.19 -0.54 -9.02 16 17 C 0.14 1.54 6.58 -3.60 -0.02 1.52 16 18 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16 19 N -0.53 -4.95 4.62 -235.77 -1.09 -6.04 16 20 C 0.10 0.85 5.29 -4.98 -0.03 0.82 16 21 C 0.14 1.24 5.64 -82.59 -0.47 0.77 16 22 C -0.17 -1.27 8.18 -39.44 -0.32 -1.60 16 23 C -0.07 -0.49 10.18 -39.28 -0.40 -0.89 16 24 C -0.18 -1.13 10.11 -39.44 -0.40 -1.53 16 25 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 26 N -0.47 -4.66 10.27 -9.48 -0.10 -4.76 16 27 C 0.04 0.37 5.38 -3.70 -0.02 0.35 16 28 C 0.12 1.32 6.60 -3.61 -0.02 1.29 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.41 6.92 4.93 -40.82 -0.20 6.72 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.19 7.11 -51.93 -0.37 0.82 16 36 H 0.09 0.65 7.99 -51.93 -0.41 0.24 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.74 7.97 -51.93 -0.41 0.33 16 39 H 0.05 0.37 8.02 -51.93 -0.42 -0.05 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.79 5.97 -51.93 -0.31 0.48 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 1.03 5.63 -51.93 -0.29 0.74 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -33.31 387.95 -9.88 -43.19 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -6.48 Total: 14.79 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: -2.98 Total: 17.39 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.42 Total: -69.69 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: 0.17 Total: -26.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.31 -9.88 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358306399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.614 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds