Wall clock time and date at job start Wed Apr 1 2020 04:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 110.54251 * 2 1 4 4 O 1.42094 * 110.54654 * 223.24403 * 2 1 3 5 5 N 1.65607 * 104.44718 * 111.61854 * 2 1 3 6 6 C 1.46506 * 119.99486 * 64.73100 * 5 2 1 7 7 C 1.53000 * 109.46612 * 165.27495 * 6 5 2 8 8 H 1.08997 * 109.58976 * 45.67422 * 7 6 5 9 9 C 1.53194 * 109.58367 * 165.95752 * 7 6 5 10 10 C 1.53039 * 109.31355 * 174.42096 * 9 7 6 11 11 C 1.53048 * 109.53539 * 298.63423 * 10 9 7 12 12 C 1.53193 * 109.31388 * 61.36754 * 11 10 9 13 13 N 1.46927 * 108.76959 * 305.36185 * 12 11 10 14 14 C 1.34778 * 120.63086 * 233.62642 * 13 12 11 15 15 O 1.21274 * 120.00280 * 185.29924 * 14 13 12 16 16 C 1.50697 * 119.99904 * 5.30507 * 14 13 12 17 17 H 1.09004 * 109.47308 * 39.99507 * 16 14 13 18 18 N 1.46904 * 109.47397 * 159.99570 * 16 14 13 19 19 C 1.53000 * 109.47014 * 279.99764 * 16 14 13 20 20 C 1.53006 * 109.47014 * 174.99931 * 19 16 14 21 21 C 1.50700 * 109.46967 * 179.97438 * 20 19 16 22 22 H 1.08007 * 120.00357 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00144 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00153 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00353 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47089 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47280 * 119.99733 * 25 23 21 28 28 H 1.48497 * 109.47275 * 240.00011 * 25 23 21 29 29 H 1.08997 * 109.47572 * 308.37833 * 1 2 3 30 30 H 1.08995 * 109.46871 * 68.38364 * 1 2 3 31 31 H 1.09011 * 109.46654 * 188.37487 * 1 2 3 32 32 H 0.96998 * 120.00363 * 245.00133 * 5 2 1 33 33 H 1.09005 * 109.46957 * 285.27062 * 6 5 2 34 34 H 1.08997 * 109.47325 * 45.27229 * 6 5 2 35 35 H 1.08999 * 109.49922 * 294.36828 * 9 7 6 36 36 H 1.08997 * 109.49916 * 54.43597 * 9 7 6 37 37 H 1.09000 * 109.46030 * 58.65095 * 10 9 7 38 38 H 1.08994 * 109.46219 * 178.61639 * 10 9 7 39 39 H 1.09007 * 109.49509 * 181.31424 * 11 10 9 40 40 H 1.08994 * 109.49562 * 301.38012 * 11 10 9 41 41 H 1.08993 * 109.58893 * 65.14761 * 12 11 10 42 42 H 1.08996 * 109.58661 * 185.43620 * 12 11 10 43 43 H 1.00898 * 110.99779 * 296.04429 * 18 16 14 44 44 H 1.00901 * 110.99664 * 60.00183 * 18 16 14 45 45 H 1.08998 * 109.47378 * 294.99775 * 19 16 14 46 46 H 1.08999 * 109.47527 * 55.00024 * 19 16 14 47 47 H 1.08996 * 109.47134 * 299.99620 * 20 19 16 48 48 H 1.08994 * 109.47179 * 60.00085 * 20 19 16 49 49 H 0.97000 * 120.00503 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 7 2.2272 -0.5908 1.4909 6 6 1.8854 -1.9687 1.8531 7 6 2.6773 -2.3806 3.0958 8 1 2.6321 -1.5842 3.8386 9 6 2.0815 -3.6643 3.6822 10 6 2.9593 -4.1473 4.8390 11 6 4.3644 -4.4604 4.3192 12 6 4.9861 -3.1857 3.7401 13 7 4.0766 -2.6345 2.7263 14 6 4.5173 -2.3671 1.4810 15 8 3.7844 -1.8238 0.6820 16 6 5.9208 -2.7434 1.0815 17 1 6.1692 -3.7181 1.5014 18 7 6.0136 -2.8033 -0.3834 19 6 6.9005 -1.6948 1.6122 20 6 8.3340 -2.1398 1.3152 21 6 9.2990 -1.1067 1.8373 22 1 8.9271 -0.2215 2.3319 23 6 10.6566 -1.2915 1.6836 24 7 11.1096 -2.3696 1.0819 25 14 11.8528 -0.0113 2.3315 26 1 11.0955 1.0984 2.9643 27 1 12.7488 -0.6355 3.3379 28 1 12.6650 0.5206 1.2079 29 1 -0.3634 0.6380 0.8056 30 1 -0.3633 0.3786 -0.9554 31 1 -0.3633 -1.0168 0.1497 32 1 2.6920 -0.0235 2.1257 33 1 0.8180 -2.0347 2.0641 34 1 2.1343 -2.6341 1.0265 35 1 1.0748 -3.4638 4.0486 36 1 2.0414 -4.4325 2.9100 37 1 3.0187 -3.3686 5.5995 38 1 2.5242 -5.0470 5.2740 39 1 4.9824 -4.8265 5.1392 40 1 4.3033 -5.2217 3.5417 41 1 5.1313 -2.4556 4.5363 42 1 5.9463 -3.4229 3.2822 43 1 5.4233 -3.5331 -0.7535 44 1 5.7878 -1.9109 -0.7967 45 1 6.7086 -0.7388 1.1251 46 1 6.7693 -1.5869 2.6888 47 1 8.5260 -3.0958 1.8023 48 1 8.4653 -2.2477 0.2386 49 1 12.0647 -2.4995 0.9734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424087522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:13 Heat of formation + Delta-G solvation = -82.954029 kcal Electronic energy + Delta-G solvation = -31045.991612 eV Core-core repulsion = 26943.158532 eV Total energy + Delta-G solvation = -4102.833080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.71546 -37.56964 -36.87892 -35.97102 -35.60914 -34.47826 -32.90053 -32.66785 -31.32136 -29.99388 -29.59641 -26.93046 -26.04083 -24.54953 -23.65718 -22.08270 -21.01820 -20.05741 -19.46686 -18.77328 -17.38578 -17.08093 -16.43934 -16.16233 -16.12741 -16.02120 -15.43400 -14.88121 -14.78098 -14.60624 -14.40679 -14.16119 -13.94757 -13.62174 -13.48266 -13.28204 -13.19574 -12.93432 -12.82981 -12.61711 -12.25987 -11.93770 -11.87032 -11.79237 -11.58593 -11.48834 -11.39552 -11.16445 -10.93532 -10.89171 -10.83990 -10.78323 -10.50454 -10.44292 -9.75986 -9.54523 -9.35866 -9.15413 -8.90071 -8.46215 -8.26210 -8.00188 -5.90082 -3.91861 0.37906 2.81712 2.99399 3.02823 3.36431 3.44176 3.48199 3.96768 4.25617 4.31368 4.51433 4.53621 4.57754 4.61667 4.82921 4.89250 4.93536 5.01265 5.04419 5.11673 5.20960 5.30679 5.40090 5.42956 5.45648 5.54059 5.58855 5.65876 5.67390 5.74457 5.79697 5.88779 5.93720 5.99680 6.13828 6.49458 6.59393 6.74822 7.07496 7.15110 7.46092 7.66488 7.80621 7.96013 8.01389 8.18451 8.46640 8.53210 9.16558 9.71228 11.20796 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.003578 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.911453 B = 7823.333124 C = 9456.903124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.688 4.688 2 S 2.625 3.375 3 O -0.971 6.971 4 O -0.926 6.926 5 N -1.090 6.090 6 C 0.131 3.869 7 C 0.140 3.860 8 H 0.074 0.926 9 C -0.129 4.129 10 C -0.118 4.118 11 C -0.137 4.137 12 C 0.103 3.897 13 N -0.611 5.611 14 C 0.473 3.527 15 O -0.512 6.512 16 C 0.078 3.922 17 H 0.093 0.907 18 N -0.807 5.807 19 C -0.097 4.097 20 C 0.032 3.968 21 C -0.520 4.520 22 H 0.052 0.948 23 C 0.058 3.942 24 N -0.893 5.893 25 Si 0.887 3.113 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.410 0.590 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.333 0.667 44 H 0.349 0.651 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.011 0.989 48 H 0.035 0.965 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.642 -3.574 6.657 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.835 4.835 2 S 2.713 3.287 3 O -0.961 6.961 4 O -0.915 6.915 5 N -0.848 5.848 6 C 0.004 3.996 7 C 0.035 3.965 8 H 0.091 0.909 9 C -0.168 4.168 10 C -0.155 4.155 11 C -0.175 4.175 12 C -0.020 4.020 13 N -0.348 5.348 14 C 0.260 3.740 15 O -0.387 6.387 16 C -0.038 4.038 17 H 0.111 0.889 18 N -0.335 5.335 19 C -0.135 4.135 20 C -0.005 4.005 21 C -0.558 4.558 22 H 0.070 0.930 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.716 3.284 26 H -0.199 1.199 27 H -0.212 1.212 28 H -0.211 1.211 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.244 0.756 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.145 0.855 44 H 0.163 0.837 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.053 0.947 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.618 -3.377 5.420 25.433 hybrid contribution -0.805 0.960 1.224 1.752 sum -25.423 -2.418 6.644 26.388 Atomic orbital electron populations 1.30740 1.31287 1.10751 1.10762 1.04541 0.76322 0.73814 0.74013 1.93592 1.77714 1.38639 1.86155 1.93620 1.75103 1.60817 1.61982 1.55289 1.73298 1.19937 1.36320 1.21368 0.95746 0.84341 0.98127 1.21349 0.82064 0.96978 0.96092 0.90854 1.21928 0.99019 0.97194 0.98637 1.21491 0.95407 1.01254 0.97373 1.21947 0.96478 0.97944 1.01143 1.21861 0.93786 0.94800 0.91509 1.48251 1.09397 1.65232 1.11877 1.22776 0.91795 0.78213 0.81179 1.90791 1.56361 1.40731 1.50823 1.21830 0.89540 1.01830 0.90583 0.88919 1.59044 1.60482 1.11293 1.02660 1.21681 0.97270 0.95980 0.98573 1.19007 0.87370 0.95728 0.98433 1.21322 0.91272 1.06061 1.37176 0.92998 1.24985 0.98439 0.95442 0.95467 1.69985 1.13494 1.26623 1.43099 0.86615 0.81308 0.81880 0.78623 1.19873 1.21167 1.21078 0.86013 0.86028 0.86022 0.75625 0.93254 0.88245 0.90853 0.91176 0.91747 0.91668 0.90530 0.91407 0.91276 0.88212 0.85521 0.83651 0.92927 0.92943 0.97049 0.94694 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.69 -4.79 10.88 101.05 1.10 -3.69 16 2 S 2.62 30.78 5.79 -107.50 -0.62 30.16 16 3 O -0.97 -15.29 18.08 -57.54 -1.04 -16.33 16 4 O -0.93 -14.45 15.20 -67.01 -1.02 -15.47 16 5 N -1.09 -11.41 3.93 -10.61 -0.04 -11.45 16 6 C 0.13 1.20 4.84 -4.04 -0.02 1.18 16 7 C 0.14 1.24 2.96 -67.60 -0.20 1.04 16 8 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 9 C -0.13 -0.87 5.33 -26.61 -0.14 -1.01 16 10 C -0.12 -0.79 5.88 -26.69 -0.16 -0.94 16 11 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 12 C 0.10 1.09 5.52 -3.71 -0.02 1.07 16 13 N -0.61 -6.97 2.97 -165.22 -0.49 -7.46 16 14 C 0.47 6.95 6.67 -10.99 -0.07 6.88 16 15 O -0.51 -8.07 7.54 -18.27 -0.14 -8.21 16 16 C 0.08 1.31 2.29 -68.86 -0.16 1.16 16 17 H 0.09 1.50 6.81 -51.93 -0.35 1.15 16 18 N -0.81 -14.33 8.44 -5.65 -0.05 -14.38 16 19 C -0.10 -1.97 4.46 -26.73 -0.12 -2.09 16 20 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 21 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 22 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 23 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 24 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 25 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 29 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.41 4.27 8.56 -34.48 -0.30 3.98 16 33 H 0.05 0.30 8.07 -51.93 -0.42 -0.12 16 34 H 0.10 1.15 5.93 -51.93 -0.31 0.84 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 1.23 4.97 -51.93 -0.26 0.97 16 43 H 0.33 5.27 9.06 -39.29 -0.36 4.91 16 44 H 0.35 6.54 8.58 -39.29 -0.34 6.20 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.05 0.99 6.81 -51.93 -0.35 0.64 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.03 0.99 7.75 -51.93 -0.40 0.58 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -36.84 388.81 -10.44 -47.27 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -8.12 Total: 10.01 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.50 Total: -10.57 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.16 Total: -59.67 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -2.20 Total: -40.01 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 30.78 SS G_CDS: -0.62 Total: 30.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.84 -10.44 -47.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424087522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.679 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds