Wall clock time and date at job start Wed Apr 1 2020 04:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 110.54251 * 2 1 4 4 O 1.42094 * 110.54654 * 223.24403 * 2 1 3 5 5 N 1.65607 * 104.44718 * 111.61854 * 2 1 3 6 6 C 1.46506 * 119.99486 * 64.73100 * 5 2 1 7 7 C 1.53000 * 109.46612 * 165.27495 * 6 5 2 8 8 H 1.08997 * 109.58976 * 45.67422 * 7 6 5 9 9 C 1.53194 * 109.58367 * 165.95752 * 7 6 5 10 10 C 1.53039 * 109.31355 * 174.42096 * 9 7 6 11 11 C 1.53048 * 109.53539 * 298.63423 * 10 9 7 12 12 C 1.53193 * 109.31388 * 61.36754 * 11 10 9 13 13 N 1.46927 * 108.76959 * 305.36185 * 12 11 10 14 14 C 1.34778 * 120.63086 * 233.62642 * 13 12 11 15 15 O 1.21274 * 120.00280 * 185.29924 * 14 13 12 16 16 C 1.50697 * 119.99904 * 5.30507 * 14 13 12 17 17 H 1.09004 * 109.47308 * 39.99507 * 16 14 13 18 18 N 1.46904 * 109.47397 * 159.99570 * 16 14 13 19 19 C 1.53000 * 109.47014 * 279.99764 * 16 14 13 20 20 C 1.53006 * 109.47014 * 174.99931 * 19 16 14 21 21 C 1.50700 * 109.46967 * 179.97438 * 20 19 16 22 22 H 1.08007 * 120.00357 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00144 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00153 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00353 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47089 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47280 * 119.99733 * 25 23 21 28 28 H 1.48497 * 109.47275 * 240.00011 * 25 23 21 29 29 H 1.08997 * 109.47572 * 308.37833 * 1 2 3 30 30 H 1.08995 * 109.46871 * 68.38364 * 1 2 3 31 31 H 1.09011 * 109.46654 * 188.37487 * 1 2 3 32 32 H 0.96998 * 120.00363 * 245.00133 * 5 2 1 33 33 H 1.09005 * 109.46957 * 285.27062 * 6 5 2 34 34 H 1.08997 * 109.47325 * 45.27229 * 6 5 2 35 35 H 1.08999 * 109.49922 * 294.36828 * 9 7 6 36 36 H 1.08997 * 109.49916 * 54.43597 * 9 7 6 37 37 H 1.09000 * 109.46030 * 58.65095 * 10 9 7 38 38 H 1.08994 * 109.46219 * 178.61639 * 10 9 7 39 39 H 1.09007 * 109.49509 * 181.31424 * 11 10 9 40 40 H 1.08994 * 109.49562 * 301.38012 * 11 10 9 41 41 H 1.08993 * 109.58893 * 65.14761 * 12 11 10 42 42 H 1.08996 * 109.58661 * 185.43620 * 12 11 10 43 43 H 1.00898 * 110.99779 * 296.04429 * 18 16 14 44 44 H 1.00901 * 110.99664 * 60.00183 * 18 16 14 45 45 H 1.08998 * 109.47378 * 294.99775 * 19 16 14 46 46 H 1.08999 * 109.47527 * 55.00024 * 19 16 14 47 47 H 1.08996 * 109.47134 * 299.99620 * 20 19 16 48 48 H 1.08994 * 109.47179 * 60.00085 * 20 19 16 49 49 H 0.97000 * 120.00503 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 7 2.2272 -0.5908 1.4909 6 6 1.8854 -1.9687 1.8531 7 6 2.6773 -2.3806 3.0958 8 1 2.6321 -1.5842 3.8386 9 6 2.0815 -3.6643 3.6822 10 6 2.9593 -4.1473 4.8390 11 6 4.3644 -4.4604 4.3192 12 6 4.9861 -3.1857 3.7401 13 7 4.0766 -2.6345 2.7263 14 6 4.5173 -2.3671 1.4810 15 8 3.7844 -1.8238 0.6820 16 6 5.9208 -2.7434 1.0815 17 1 6.1692 -3.7181 1.5014 18 7 6.0136 -2.8033 -0.3834 19 6 6.9005 -1.6948 1.6122 20 6 8.3340 -2.1398 1.3152 21 6 9.2990 -1.1067 1.8373 22 1 8.9271 -0.2215 2.3319 23 6 10.6566 -1.2915 1.6836 24 7 11.1096 -2.3696 1.0819 25 14 11.8528 -0.0113 2.3315 26 1 11.0955 1.0984 2.9643 27 1 12.7488 -0.6355 3.3379 28 1 12.6650 0.5206 1.2079 29 1 -0.3634 0.6380 0.8056 30 1 -0.3633 0.3786 -0.9554 31 1 -0.3633 -1.0168 0.1497 32 1 2.6920 -0.0235 2.1257 33 1 0.8180 -2.0347 2.0641 34 1 2.1343 -2.6341 1.0265 35 1 1.0748 -3.4638 4.0486 36 1 2.0414 -4.4325 2.9100 37 1 3.0187 -3.3686 5.5995 38 1 2.5242 -5.0470 5.2740 39 1 4.9824 -4.8265 5.1392 40 1 4.3033 -5.2217 3.5417 41 1 5.1313 -2.4556 4.5363 42 1 5.9463 -3.4229 3.2822 43 1 5.4233 -3.5331 -0.7535 44 1 5.7878 -1.9109 -0.7967 45 1 6.7086 -0.7388 1.1251 46 1 6.7693 -1.5869 2.6888 47 1 8.5260 -3.0958 1.8023 48 1 8.4653 -2.2477 0.2386 49 1 12.0647 -2.4995 0.9734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424087522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:12 Heat of formation + Delta-G solvation = -112.682898 kcal Electronic energy + Delta-G solvation = -31047.280753 eV Core-core repulsion = 26943.158532 eV Total energy + Delta-G solvation = -4104.122220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71094 -38.53544 -37.91636 -37.16193 -36.65751 -35.70534 -34.68066 -33.68552 -32.07030 -31.87190 -30.21692 -28.29197 -27.25013 -25.62465 -24.97872 -23.06368 -22.24400 -21.30096 -20.47216 -19.75352 -18.57046 -18.19309 -18.00798 -17.30203 -17.11429 -17.01105 -16.68921 -16.46663 -15.83693 -15.59747 -15.50180 -15.15170 -15.00767 -14.69962 -14.27495 -14.14141 -14.06533 -13.91241 -13.87986 -13.66720 -13.59064 -13.44648 -13.35237 -12.89789 -12.83701 -12.79524 -12.53065 -12.45660 -12.21269 -12.08813 -11.83431 -11.72480 -11.66888 -11.54810 -11.47358 -11.34361 -11.11224 -10.55537 -10.45105 -10.04424 -9.40472 -9.30326 -8.14103 -6.24605 -0.45973 1.39916 1.41564 1.53839 1.71175 2.08148 2.12399 2.44023 3.15447 3.18544 3.51826 3.53991 3.68374 3.90198 3.93391 3.98470 4.05856 4.15257 4.17101 4.27775 4.30474 4.34652 4.37065 4.52662 4.60139 4.76703 4.79801 4.89895 4.90458 4.93953 4.99225 5.04292 5.10995 5.19333 5.24050 5.28796 5.31230 5.52606 5.56359 5.76955 5.84213 5.98090 6.17692 6.29027 6.30339 6.46969 6.55093 6.93898 7.35129 7.43490 8.97277 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.003578 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.911453 B = 7823.333124 C = 9456.903124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.619 3.381 3 O -1.023 7.023 4 O -0.978 6.978 5 N -1.090 6.090 6 C 0.126 3.874 7 C 0.135 3.865 8 H 0.088 0.912 9 C -0.122 4.122 10 C -0.114 4.114 11 C -0.132 4.132 12 C 0.098 3.902 13 N -0.604 5.604 14 C 0.472 3.528 15 O -0.521 6.521 16 C 0.082 3.918 17 H 0.097 0.903 18 N -0.820 5.820 19 C -0.079 4.079 20 C 0.042 3.958 21 C -0.542 4.542 22 H 0.053 0.947 23 C 0.002 3.998 24 N -0.929 5.929 25 Si 0.960 3.040 26 H -0.265 1.265 27 H -0.274 1.274 28 H -0.282 1.282 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.147 0.853 32 H 0.409 0.591 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.343 0.657 44 H 0.341 0.659 45 H 0.033 0.967 46 H 0.066 0.934 47 H -0.007 1.007 48 H 0.000 1.000 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.478 -3.392 9.097 30.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.714 3.286 3 O -1.014 7.014 4 O -0.968 6.968 5 N -0.849 5.849 6 C 0.000 4.000 7 C 0.031 3.969 8 H 0.106 0.894 9 C -0.161 4.161 10 C -0.152 4.152 11 C -0.170 4.170 12 C -0.025 4.025 13 N -0.339 5.339 14 C 0.258 3.742 15 O -0.398 6.398 16 C -0.034 4.034 17 H 0.115 0.885 18 N -0.348 5.348 19 C -0.118 4.118 20 C 0.005 3.995 21 C -0.580 4.580 22 H 0.072 0.928 23 C -0.196 4.196 24 N -0.570 5.570 25 Si 0.785 3.215 26 H -0.189 1.189 27 H -0.200 1.200 28 H -0.208 1.208 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.165 0.835 32 H 0.243 0.757 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.052 0.948 46 H 0.085 0.915 47 H 0.012 0.988 48 H 0.019 0.981 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.426 -3.216 7.894 28.720 hybrid contribution -0.007 0.852 0.480 0.978 sum -27.433 -2.364 8.374 28.780 Atomic orbital electron populations 1.30404 1.24520 1.13255 1.12767 1.04254 0.78660 0.72075 0.73648 1.93520 1.80299 1.40762 1.86790 1.93561 1.77973 1.61556 1.63698 1.55083 1.73932 1.20547 1.35343 1.21517 0.98271 0.82933 0.97243 1.21671 0.80067 0.98766 0.96393 0.89391 1.21924 1.00307 0.95557 0.98329 1.21489 0.94011 1.02221 0.97431 1.21911 0.97856 0.96187 1.01071 1.21940 0.92987 0.96346 0.91199 1.48192 1.10965 1.64114 1.10613 1.22104 0.90638 0.78908 0.82526 1.90836 1.56184 1.41220 1.51553 1.21606 0.90849 1.00857 0.90046 0.88483 1.59020 1.61201 1.11176 1.03445 1.21375 0.95077 0.95925 0.99389 1.18797 0.90439 0.94556 0.95738 1.21739 0.92305 1.06620 1.37342 0.92828 1.25902 1.00471 0.97622 0.95587 1.70117 1.14112 1.28574 1.44179 0.85482 0.78717 0.79190 0.78128 1.18889 1.19984 1.20778 0.83459 0.84602 0.83467 0.75737 0.88762 0.90880 0.87900 0.91855 0.90969 0.90157 0.89652 0.92197 0.90482 0.90665 0.84417 0.84557 0.94786 0.91504 0.98833 0.98123 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -6.77 10.88 113.37 1.23 -5.54 16 2 S 2.62 60.72 5.79 -56.49 -0.33 60.40 16 3 O -1.02 -33.20 18.08 -127.65 -2.31 -35.51 16 4 O -0.98 -31.57 15.20 -118.59 -1.80 -33.37 16 5 N -1.09 -21.62 3.93 -187.47 -0.74 -22.35 16 6 C 0.13 2.01 4.84 86.38 0.42 2.43 16 7 C 0.13 2.03 2.96 44.98 0.13 2.16 16 8 H 0.09 1.14 8.07 -2.39 -0.02 1.12 16 9 C -0.12 -1.21 5.33 30.67 0.16 -1.04 16 10 C -0.11 -1.14 5.88 30.62 0.18 -0.96 16 11 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 12 C 0.10 1.99 5.52 86.36 0.48 2.46 16 13 N -0.60 -13.27 2.97 -795.04 -2.36 -15.63 16 14 C 0.47 14.16 6.67 87.66 0.59 14.75 16 15 O -0.52 -16.90 7.54 19.77 0.15 -16.75 16 16 C 0.08 2.90 2.29 44.17 0.10 3.00 16 17 H 0.10 3.31 6.81 -2.39 -0.02 3.30 16 18 N -0.82 -31.04 8.44 -171.79 -1.45 -32.49 16 19 C -0.08 -3.38 4.46 30.60 0.14 -3.25 16 20 C 0.04 2.27 4.86 29.85 0.15 2.41 16 21 C -0.54 -31.75 9.11 25.60 0.23 -31.51 16 22 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 23 C 0.00 0.11 5.46 84.65 0.46 0.57 16 24 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 25 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 26 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 28 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 29 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.15 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.41 8.23 8.56 -96.74 -0.83 7.40 16 33 H 0.09 0.69 8.07 -2.38 -0.02 0.67 16 34 H 0.07 1.61 5.93 -2.39 -0.01 1.59 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.90 4.97 -2.39 -0.01 1.89 16 43 H 0.34 11.51 9.06 -89.70 -0.81 10.70 16 44 H 0.34 13.75 8.58 -89.69 -0.77 12.98 16 45 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.07 2.61 6.81 -2.39 -0.02 2.59 16 47 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.00 0.02 7.75 -2.39 -0.02 0.00 16 49 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -84.33 388.81 -3.50 -87.84 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -1.43 Total: 34.15 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 4.45 Total: -16.24 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -4.26 Total: -128.09 kcal Atomic # 8 Polarization: -81.67 SS G_CDS: -3.96 Total: -85.63 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 60.72 SS G_CDS: -0.33 Total: 60.40 kcal Total: -84.33 -3.50 -87.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424087522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.848 kcal (2) G-P(sol) polarization free energy of solvation -84.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds