Wall clock time and date at job start Wed Apr 1 2020 04:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42100 * 110.53921 * 2 1 4 4 O 1.42103 * 110.54352 * 223.25595 * 2 1 3 5 5 N 1.65592 * 104.45193 * 111.62948 * 2 1 3 6 6 C 1.46501 * 120.00451 * 65.00165 * 5 2 1 7 7 C 1.52993 * 109.47495 * 165.69330 * 6 5 2 8 8 H 1.09005 * 109.58531 * 59.09287 * 7 6 5 9 9 C 1.53188 * 109.59042 * 298.80692 * 7 6 5 10 10 C 1.53044 * 109.31555 * 185.57540 * 9 7 6 11 11 C 1.53036 * 109.53560 * 61.36696 * 10 9 7 12 12 C 1.53198 * 109.31163 * 298.63263 * 11 10 9 13 13 N 1.46923 * 109.58952 * 179.51607 * 7 6 5 14 14 C 1.34781 * 120.63016 * 353.39724 * 13 7 6 15 15 O 1.21287 * 119.99688 * 4.97589 * 14 13 7 16 16 C 1.50695 * 120.00342 * 184.97494 * 14 13 7 17 17 H 1.08999 * 109.46699 * 40.00426 * 16 14 13 18 18 N 1.46904 * 109.47191 * 159.99961 * 16 14 13 19 19 C 1.53000 * 109.47213 * 280.00453 * 16 14 13 20 20 C 1.53000 * 109.47025 * 174.99855 * 19 16 14 21 21 C 1.50700 * 109.47292 * 179.97438 * 20 19 16 22 22 H 1.08004 * 119.99510 * 0.02562 * 21 20 19 23 23 C 1.37868 * 120.00310 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00216 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00183 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46902 * 90.00090 * 25 23 21 27 27 H 1.48494 * 109.47483 * 210.00209 * 25 23 21 28 28 H 1.48508 * 109.47007 * 330.00311 * 25 23 21 29 29 H 1.09004 * 109.47214 * 308.36777 * 1 2 3 30 30 H 1.09001 * 109.47657 * 68.37011 * 1 2 3 31 31 H 1.09002 * 109.47061 * 188.37436 * 1 2 3 32 32 H 0.97006 * 119.99732 * 244.99726 * 5 2 1 33 33 H 1.09003 * 109.46615 * 45.69256 * 6 5 2 34 34 H 1.09001 * 109.47030 * 285.69805 * 6 5 2 35 35 H 1.09000 * 109.49821 * 305.52754 * 9 7 6 36 36 H 1.08998 * 109.49583 * 65.62486 * 9 7 6 37 37 H 1.09003 * 109.45759 * 181.38543 * 10 9 7 38 38 H 1.08999 * 109.45788 * 301.36025 * 10 9 7 39 39 H 1.09002 * 109.49993 * 58.58429 * 11 10 9 40 40 H 1.09003 * 109.49953 * 178.65313 * 11 10 9 41 41 H 1.09002 * 109.58576 * 174.42070 * 12 11 10 42 42 H 1.09003 * 109.58764 * 294.70746 * 12 11 10 43 43 H 1.00904 * 110.99675 * 60.00045 * 18 16 14 44 44 H 1.00901 * 110.99969 * 183.95321 * 18 16 14 45 45 H 1.09001 * 109.46729 * 294.99189 * 19 16 14 46 46 H 1.08994 * 109.47173 * 54.99765 * 19 16 14 47 47 H 1.08996 * 109.47399 * 299.99946 * 20 19 16 48 48 H 1.09007 * 109.46975 * 59.99757 * 20 19 16 49 49 H 0.96993 * 120.00018 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2272 -0.5911 1.4906 6 6 1.8909 -1.9707 1.8506 7 6 2.6747 -2.3774 3.1000 8 1 2.4282 -1.7043 3.9212 9 6 4.1771 -2.3050 2.8100 10 6 4.9518 -2.8446 4.0146 11 6 4.5755 -4.3090 4.2508 12 6 3.0776 -4.4042 4.5572 13 7 2.3305 -3.7570 3.4701 14 6 1.3481 -4.4164 2.8247 15 8 0.8000 -3.9055 1.8709 16 6 0.9306 -5.7882 3.2880 17 1 0.9194 -5.8158 4.3775 18 7 -0.4131 -6.0900 2.7766 19 6 1.9221 -6.8279 2.7616 20 6 1.5707 -8.2029 3.3334 21 6 2.5468 -9.2271 2.8145 22 1 3.3389 -8.9272 2.1443 23 6 2.4288 -10.5469 3.1953 24 7 3.2810 -11.4406 2.7429 25 14 1.0593 -11.0655 4.3551 26 1 -0.1404 -11.4444 3.5661 27 1 1.5082 -12.2280 5.1626 28 1 0.7214 -9.9362 5.2584 29 1 -0.3634 0.6379 0.8058 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3633 -1.0167 0.1497 32 1 2.6921 -0.0237 2.1255 33 1 2.1509 -2.6349 1.0264 34 1 0.8222 -2.0433 2.0525 35 1 4.4073 -2.9063 1.9305 36 1 4.4630 -1.2690 2.6280 37 1 6.0219 -2.7713 3.8205 38 1 4.7021 -2.2585 4.8990 39 1 4.8019 -4.8914 3.3576 40 1 5.1453 -4.6997 5.0939 41 1 2.7850 -5.4518 4.6284 42 1 2.8647 -3.9004 5.5001 43 1 -0.4289 -6.0704 1.7679 44 1 -0.7422 -6.9774 3.1263 45 1 1.8687 -6.8625 1.6735 46 1 2.9318 -6.5545 3.0675 47 1 1.6239 -8.1683 4.4215 48 1 0.5608 -8.4763 3.0275 49 1 3.1981 -12.3690 3.0111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424087524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:20 Heat of formation + Delta-G solvation = -103.186232 kcal Electronic energy + Delta-G solvation = -30314.807601 eV Core-core repulsion = 26211.097187 eV Total energy + Delta-G solvation = -4103.710414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82064 -37.76533 -37.25541 -36.22049 -36.08235 -35.18311 -33.00208 -32.82605 -31.16819 -30.38393 -29.67819 -27.45565 -26.31688 -24.74478 -23.71874 -22.10920 -20.96426 -20.41336 -19.74525 -18.83398 -17.91179 -17.52466 -16.83195 -16.51523 -16.21854 -16.01835 -15.52205 -15.15210 -14.84200 -14.59498 -14.34463 -14.20583 -14.13226 -13.77868 -13.61955 -13.54694 -13.35666 -13.10932 -12.86685 -12.72722 -12.68899 -12.44815 -12.27331 -12.15579 -12.00235 -11.94200 -11.40744 -11.34153 -11.20999 -11.16130 -11.02212 -10.88199 -10.74423 -10.30394 -10.13786 -9.91763 -9.65459 -9.35776 -9.17393 -8.67033 -8.65653 -8.36667 -6.15138 -4.15087 0.09477 2.44626 2.66523 2.93101 3.21583 3.30005 3.30479 3.60977 4.02073 4.29311 4.33822 4.49475 4.55810 4.62672 4.76168 4.79530 4.85205 4.95179 4.95945 5.03441 5.17485 5.22281 5.33493 5.35267 5.41436 5.45863 5.51517 5.56191 5.64070 5.77034 5.78510 5.89493 5.92812 5.98024 6.08125 6.21004 6.26321 6.46605 6.59428 6.76536 7.03352 7.15190 7.19950 7.40821 7.61740 7.70589 8.20753 8.40659 8.88965 9.45869 10.98046 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.002757 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.954059 B =10152.340407 C =10905.099040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.619 3.381 3 O -0.968 6.968 4 O -0.954 6.954 5 N -1.126 6.126 6 C 0.119 3.881 7 C 0.144 3.856 8 H 0.077 0.923 9 C -0.134 4.134 10 C -0.119 4.119 11 C -0.138 4.138 12 C 0.102 3.898 13 N -0.608 5.608 14 C 0.530 3.470 15 O -0.534 6.534 16 C 0.071 3.929 17 H 0.097 0.903 18 N -0.831 5.831 19 C -0.133 4.133 20 C -0.009 4.009 21 C -0.524 4.524 22 H 0.071 0.929 23 C 0.068 3.932 24 N -0.900 5.900 25 Si 0.880 3.120 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.411 0.589 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.348 0.652 44 H 0.351 0.649 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.017 0.983 48 H 0.011 0.989 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 22.842 3.784 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.711 3.289 3 O -0.959 6.959 4 O -0.944 6.944 5 N -0.889 5.889 6 C -0.005 4.005 7 C 0.040 3.960 8 H 0.095 0.905 9 C -0.173 4.173 10 C -0.156 4.156 11 C -0.176 4.176 12 C -0.020 4.020 13 N -0.344 5.344 14 C 0.319 3.681 15 O -0.410 6.410 16 C -0.044 4.044 17 H 0.115 0.885 18 N -0.363 5.363 19 C -0.173 4.173 20 C -0.047 4.047 21 C -0.562 4.562 22 H 0.090 0.910 23 C -0.134 4.134 24 N -0.538 5.538 25 Si 0.708 3.292 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.190 1.190 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.245 0.755 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.029 0.971 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.020 23.683 2.859 24.045 hybrid contribution -0.510 -1.255 0.873 1.611 sum -3.530 22.428 3.732 23.009 Atomic orbital electron populations 1.30508 1.28468 1.12117 1.11160 1.04506 0.77573 0.73564 0.73292 1.93601 1.78217 1.38035 1.85997 1.93633 1.76900 1.61572 1.62272 1.55875 1.74387 1.22174 1.36426 1.22297 1.00036 0.79883 0.98311 1.21343 0.94902 0.83078 0.96709 0.90526 1.22036 0.93888 1.02036 0.99313 1.21517 1.00106 0.96079 0.97918 1.21939 0.95367 0.97050 1.03272 1.21918 0.91636 0.99512 0.88977 1.48117 1.35879 1.13612 1.36743 1.20852 0.77955 0.87226 0.82049 1.90592 1.55307 1.67612 1.27464 1.21560 0.91000 0.91164 1.00720 0.88476 1.58764 1.22229 1.39595 1.15669 1.22282 0.98100 0.95717 1.01166 1.19565 0.96939 0.92033 0.96139 1.21046 1.13935 0.91705 1.29510 0.91044 1.25040 0.95886 0.96606 0.95869 1.69909 1.36669 1.02489 1.44750 0.86780 0.82551 0.78419 0.81497 1.20232 1.21342 1.18986 0.85495 0.85599 0.84831 0.75506 0.88572 0.88942 0.90808 0.90731 0.91478 0.91884 0.90764 0.90303 0.88212 0.91292 0.83804 0.83444 0.91913 0.91603 0.96429 0.97070 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.46 10.89 101.05 1.10 -3.36 16 2 S 2.62 24.80 6.10 -107.50 -0.66 24.14 16 3 O -0.97 -11.61 18.08 -57.54 -1.04 -12.65 16 4 O -0.95 -13.28 17.51 -57.54 -1.01 -14.29 16 5 N -1.13 -9.41 5.45 -10.61 -0.06 -9.47 16 6 C 0.12 1.27 3.97 -4.05 -0.02 1.26 16 7 C 0.14 1.40 3.02 -67.61 -0.20 1.20 16 8 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 9 C -0.13 -1.23 5.13 -26.61 -0.14 -1.36 16 10 C -0.12 -0.96 5.88 -26.69 -0.16 -1.12 16 11 C -0.14 -1.30 6.08 -26.61 -0.16 -1.46 16 12 C 0.10 1.01 5.72 -3.71 -0.02 0.99 16 13 N -0.61 -6.92 2.97 -165.22 -0.49 -7.41 16 14 C 0.53 7.48 6.87 -10.99 -0.08 7.40 16 15 O -0.53 -8.33 11.65 5.55 0.06 -8.27 16 16 C 0.07 1.03 2.35 -68.87 -0.16 0.87 16 17 H 0.10 1.31 7.06 -51.93 -0.37 0.95 16 18 N -0.83 -12.18 8.94 -5.65 -0.05 -12.23 16 19 C -0.13 -2.33 4.41 -26.73 -0.12 -2.45 16 20 C -0.01 -0.20 3.81 -27.88 -0.11 -0.30 16 21 C -0.52 -14.04 9.66 -34.44 -0.33 -14.38 16 22 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 23 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 24 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 25 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 29 H 0.13 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.13 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.13 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.41 2.58 8.08 -34.46 -0.28 2.30 16 33 H 0.10 1.31 6.65 -51.93 -0.35 0.96 16 34 H 0.09 1.03 6.39 -51.93 -0.33 0.70 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.57 7.44 -51.93 -0.39 0.18 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.10 4.63 -51.93 -0.24 0.86 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.35 5.23 8.58 -39.29 -0.34 4.89 16 44 H 0.35 5.04 7.55 -39.29 -0.30 4.74 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.07 1.13 6.59 -51.93 -0.34 0.78 16 47 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 48 H 0.01 0.23 6.30 -51.93 -0.33 -0.09 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -35.38 388.46 -9.63 -45.01 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.86 Total: 10.47 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.49 Total: -10.92 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.17 Total: -55.18 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.98 Total: -35.21 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 24.80 SS G_CDS: -0.66 Total: 24.14 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.38 -9.63 -45.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424087524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.180 kcal (2) G-P(sol) polarization free energy of solvation -35.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds