Wall clock time and date at job start Wed Apr 1 2020 04:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42100 * 110.53921 * 2 1 4 4 O 1.42103 * 110.54352 * 223.25595 * 2 1 3 5 5 N 1.65592 * 104.45193 * 111.62948 * 2 1 3 6 6 C 1.46501 * 120.00451 * 65.00165 * 5 2 1 7 7 C 1.52993 * 109.47495 * 165.69330 * 6 5 2 8 8 H 1.09005 * 109.58531 * 59.09287 * 7 6 5 9 9 C 1.53188 * 109.59042 * 298.80692 * 7 6 5 10 10 C 1.53044 * 109.31555 * 185.57540 * 9 7 6 11 11 C 1.53036 * 109.53560 * 61.36696 * 10 9 7 12 12 C 1.53198 * 109.31163 * 298.63263 * 11 10 9 13 13 N 1.46923 * 109.58952 * 179.51607 * 7 6 5 14 14 C 1.34781 * 120.63016 * 353.39724 * 13 7 6 15 15 O 1.21287 * 119.99688 * 4.97589 * 14 13 7 16 16 C 1.50695 * 120.00342 * 184.97494 * 14 13 7 17 17 H 1.08999 * 109.46699 * 40.00426 * 16 14 13 18 18 N 1.46904 * 109.47191 * 159.99961 * 16 14 13 19 19 C 1.53000 * 109.47213 * 280.00453 * 16 14 13 20 20 C 1.53000 * 109.47025 * 174.99855 * 19 16 14 21 21 C 1.50700 * 109.47292 * 179.97438 * 20 19 16 22 22 H 1.08004 * 119.99510 * 0.02562 * 21 20 19 23 23 C 1.37868 * 120.00310 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00216 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00183 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46902 * 90.00090 * 25 23 21 27 27 H 1.48494 * 109.47483 * 210.00209 * 25 23 21 28 28 H 1.48508 * 109.47007 * 330.00311 * 25 23 21 29 29 H 1.09004 * 109.47214 * 308.36777 * 1 2 3 30 30 H 1.09001 * 109.47657 * 68.37011 * 1 2 3 31 31 H 1.09002 * 109.47061 * 188.37436 * 1 2 3 32 32 H 0.97006 * 119.99732 * 244.99726 * 5 2 1 33 33 H 1.09003 * 109.46615 * 45.69256 * 6 5 2 34 34 H 1.09001 * 109.47030 * 285.69805 * 6 5 2 35 35 H 1.09000 * 109.49821 * 305.52754 * 9 7 6 36 36 H 1.08998 * 109.49583 * 65.62486 * 9 7 6 37 37 H 1.09003 * 109.45759 * 181.38543 * 10 9 7 38 38 H 1.08999 * 109.45788 * 301.36025 * 10 9 7 39 39 H 1.09002 * 109.49993 * 58.58429 * 11 10 9 40 40 H 1.09003 * 109.49953 * 178.65313 * 11 10 9 41 41 H 1.09002 * 109.58576 * 174.42070 * 12 11 10 42 42 H 1.09003 * 109.58764 * 294.70746 * 12 11 10 43 43 H 1.00904 * 110.99675 * 60.00045 * 18 16 14 44 44 H 1.00901 * 110.99969 * 183.95321 * 18 16 14 45 45 H 1.09001 * 109.46729 * 294.99189 * 19 16 14 46 46 H 1.08994 * 109.47173 * 54.99765 * 19 16 14 47 47 H 1.08996 * 109.47399 * 299.99946 * 20 19 16 48 48 H 1.09007 * 109.46975 * 59.99757 * 20 19 16 49 49 H 0.96993 * 120.00018 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2272 -0.5911 1.4906 6 6 1.8909 -1.9707 1.8506 7 6 2.6747 -2.3774 3.1000 8 1 2.4282 -1.7043 3.9212 9 6 4.1771 -2.3050 2.8100 10 6 4.9518 -2.8446 4.0146 11 6 4.5755 -4.3090 4.2508 12 6 3.0776 -4.4042 4.5572 13 7 2.3305 -3.7570 3.4701 14 6 1.3481 -4.4164 2.8247 15 8 0.8000 -3.9055 1.8709 16 6 0.9306 -5.7882 3.2880 17 1 0.9194 -5.8158 4.3775 18 7 -0.4131 -6.0900 2.7766 19 6 1.9221 -6.8279 2.7616 20 6 1.5707 -8.2029 3.3334 21 6 2.5468 -9.2271 2.8145 22 1 3.3389 -8.9272 2.1443 23 6 2.4288 -10.5469 3.1953 24 7 3.2810 -11.4406 2.7429 25 14 1.0593 -11.0655 4.3551 26 1 -0.1404 -11.4444 3.5661 27 1 1.5082 -12.2280 5.1626 28 1 0.7214 -9.9362 5.2584 29 1 -0.3634 0.6379 0.8058 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3633 -1.0167 0.1497 32 1 2.6921 -0.0237 2.1255 33 1 2.1509 -2.6349 1.0264 34 1 0.8222 -2.0433 2.0525 35 1 4.4073 -2.9063 1.9305 36 1 4.4630 -1.2690 2.6280 37 1 6.0219 -2.7713 3.8205 38 1 4.7021 -2.2585 4.8990 39 1 4.8019 -4.8914 3.3576 40 1 5.1453 -4.6997 5.0939 41 1 2.7850 -5.4518 4.6284 42 1 2.8647 -3.9004 5.5001 43 1 -0.4289 -6.0704 1.7679 44 1 -0.7422 -6.9774 3.1263 45 1 1.8687 -6.8625 1.6735 46 1 2.9318 -6.5545 3.0675 47 1 1.6239 -8.1683 4.4215 48 1 0.5608 -8.4763 3.0275 49 1 3.1981 -12.3690 3.0111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424087524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:19 Heat of formation + Delta-G solvation = -133.203089 kcal Electronic energy + Delta-G solvation = -30316.109230 eV Core-core repulsion = 26211.097187 eV Total energy + Delta-G solvation = -4105.012043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79486 -38.73272 -38.15215 -37.37957 -37.02136 -36.15687 -34.79175 -33.82138 -32.06993 -31.95413 -30.26871 -28.66064 -27.48221 -25.68656 -25.07854 -23.01005 -22.14589 -21.67553 -20.59034 -19.81820 -19.04717 -18.65357 -18.36197 -17.33171 -17.08537 -17.03187 -16.50023 -16.28569 -16.06364 -15.80575 -15.41642 -15.27673 -15.15040 -14.95258 -14.61309 -14.51894 -14.22989 -14.15010 -13.96314 -13.87896 -13.69437 -13.52326 -13.27108 -13.19394 -13.07869 -12.98167 -12.79929 -12.59482 -12.16919 -12.03658 -11.95008 -11.92102 -11.86307 -11.65439 -11.61702 -11.46955 -11.38672 -10.76512 -10.52432 -10.20142 -9.65970 -9.48475 -8.28688 -6.34450 -0.65145 1.39548 1.40745 1.52141 1.56898 1.65361 2.06516 2.37164 2.87673 3.07070 3.27564 3.42328 3.70220 3.76365 3.84221 3.92985 4.02152 4.08098 4.09376 4.18643 4.19931 4.23428 4.28112 4.47251 4.54771 4.60202 4.66107 4.70537 4.79215 4.90648 4.93449 4.94780 5.01739 5.05075 5.09050 5.21733 5.23957 5.38439 5.47467 5.48222 5.61909 5.63662 6.07265 6.16779 6.26171 6.36941 6.51022 6.74470 7.16394 7.30517 8.88255 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.002757 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.954059 B =10152.340407 C =10905.099040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.627 3.373 3 O -0.994 6.994 4 O -1.007 7.007 5 N -1.116 6.116 6 C 0.127 3.873 7 C 0.141 3.859 8 H 0.111 0.889 9 C -0.134 4.134 10 C -0.113 4.113 11 C -0.139 4.139 12 C 0.098 3.902 13 N -0.603 5.603 14 C 0.523 3.477 15 O -0.554 6.554 16 C 0.080 3.920 17 H 0.118 0.882 18 N -0.827 5.827 19 C -0.121 4.121 20 C -0.004 4.004 21 C -0.533 4.533 22 H 0.023 0.977 23 C 0.002 3.998 24 N -0.954 5.954 25 Si 0.954 3.046 26 H -0.269 1.269 27 H -0.289 1.289 28 H -0.233 1.233 29 H 0.154 0.846 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.423 0.577 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.345 0.655 44 H 0.354 0.646 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.023 0.977 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 24.956 6.848 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.723 3.277 3 O -0.985 6.985 4 O -0.997 6.997 5 N -0.879 5.879 6 C 0.001 3.999 7 C 0.037 3.963 8 H 0.128 0.872 9 C -0.172 4.172 10 C -0.150 4.150 11 C -0.177 4.177 12 C -0.024 4.024 13 N -0.337 5.337 14 C 0.312 3.688 15 O -0.432 6.432 16 C -0.036 4.036 17 H 0.136 0.864 18 N -0.359 5.359 19 C -0.161 4.161 20 C -0.041 4.041 21 C -0.571 4.571 22 H 0.042 0.958 23 C -0.195 4.195 24 N -0.595 5.595 25 Si 0.777 3.223 26 H -0.195 1.195 27 H -0.215 1.215 28 H -0.156 1.156 29 H 0.172 0.828 30 H 0.162 0.838 31 H 0.152 0.848 32 H 0.259 0.741 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.120 0.880 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.041 0.959 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.063 25.843 5.944 26.997 hybrid contribution 0.215 -1.874 -0.167 1.894 sum -4.848 23.969 5.778 25.127 Atomic orbital electron populations 1.30328 1.24058 1.12975 1.13422 1.04010 0.78922 0.72136 0.72680 1.93561 1.79791 1.38862 1.86276 1.93572 1.79127 1.62863 1.64168 1.55532 1.74882 1.21451 1.36076 1.22020 1.00163 0.80110 0.97574 1.21560 0.94883 0.82606 0.97251 0.87177 1.22041 0.93884 1.02592 0.98731 1.21502 1.00107 0.95185 0.98217 1.21941 0.95516 0.97806 1.02426 1.22084 0.91416 0.99191 0.89671 1.48156 1.34847 1.14188 1.36501 1.20766 0.78771 0.87203 0.82110 1.90598 1.56374 1.68077 1.28182 1.21473 0.89821 0.90586 1.01676 0.86416 1.58789 1.21940 1.39681 1.15481 1.22082 0.99249 0.95253 0.99476 1.19483 0.95730 0.92098 0.96805 1.21428 1.13808 0.93398 1.28469 0.95810 1.26093 0.98854 0.96562 0.97983 1.70090 1.39371 1.03017 1.47011 0.85607 0.78661 0.78723 0.79315 1.19459 1.21547 1.15590 0.82803 0.83798 0.84816 0.74086 0.92180 0.88955 0.93948 0.88981 0.91148 0.89307 0.93900 0.88850 0.89483 0.88000 0.84200 0.83135 0.94399 0.91753 0.94820 0.95907 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -7.22 10.89 113.37 1.23 -5.99 16 2 S 2.63 48.88 6.10 -56.49 -0.34 48.53 16 3 O -0.99 -23.28 18.08 -127.65 -2.31 -25.59 16 4 O -1.01 -29.37 17.51 -127.65 -2.23 -31.61 16 5 N -1.12 -17.46 5.45 -187.49 -1.02 -18.48 16 6 C 0.13 2.62 3.97 86.38 0.34 2.96 16 7 C 0.14 2.46 3.02 44.97 0.14 2.60 16 8 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 9 C -0.13 -2.29 5.13 30.67 0.16 -2.13 16 10 C -0.11 -1.57 5.88 30.62 0.18 -1.39 16 11 C -0.14 -2.43 6.08 30.67 0.19 -2.24 16 12 C 0.10 1.71 5.72 86.36 0.49 2.20 16 13 N -0.60 -12.73 2.97 -795.03 -2.36 -15.10 16 14 C 0.52 14.28 6.87 87.65 0.60 14.89 16 15 O -0.55 -17.21 11.65 -3.05 -0.04 -17.24 16 16 C 0.08 2.21 2.35 44.17 0.10 2.32 16 17 H 0.12 2.82 7.06 -2.39 -0.02 2.80 16 18 N -0.83 -22.97 8.94 -171.80 -1.54 -24.51 16 19 C -0.12 -4.27 4.41 30.59 0.13 -4.13 16 20 C 0.00 -0.15 3.81 29.85 0.11 -0.04 16 21 C -0.53 -29.37 9.66 25.60 0.25 -29.12 16 22 H 0.02 1.48 7.99 -2.91 -0.02 1.46 16 23 C 0.00 0.09 5.47 84.65 0.46 0.55 16 24 N -0.95 -58.90 13.96 21.44 0.30 -58.60 16 25 Si 0.95 41.59 27.47 68.60 1.88 43.47 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 28 H -0.23 -8.89 6.54 99.48 0.65 -8.24 16 29 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.42 4.48 8.08 -96.74 -0.78 3.70 16 33 H 0.06 1.71 6.65 -2.39 -0.02 1.69 16 34 H 0.09 1.94 6.39 -2.39 -0.02 1.93 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.24 7.44 -2.39 -0.02 1.22 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.76 4.63 -2.39 -0.01 1.75 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.34 10.15 8.58 -89.69 -0.77 9.38 16 44 H 0.35 9.35 7.55 -89.69 -0.68 8.68 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 2.26 6.59 -2.39 -0.02 2.25 16 47 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 48 H 0.02 0.90 6.30 -2.38 -0.02 0.89 16 49 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -80.76 388.46 -4.56 -85.32 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -1.30 Total: 33.32 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 4.40 Total: -19.51 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -4.62 Total: -116.69 kcal Atomic # 8 Polarization: -69.86 SS G_CDS: -4.58 Total: -74.44 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.88 Total: 43.47 kcal Atomic # 16 Polarization: 48.88 SS G_CDS: -0.34 Total: 48.53 kcal Total: -80.76 -4.56 -85.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424087524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.882 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds