Wall clock time and date at job start Wed Apr 1 2020 04:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42096 * 110.54139 * 2 1 4 4 O 1.42097 * 110.54177 * 223.25643 * 2 1 3 5 5 N 1.65598 * 104.45233 * 111.62832 * 2 1 3 6 6 C 1.46497 * 119.99970 * 64.99739 * 5 2 1 7 7 C 1.52998 * 109.46867 * 165.00076 * 6 5 2 8 8 H 1.09002 * 109.58559 * 50.21832 * 7 6 5 9 9 C 1.53197 * 109.58695 * 170.64028 * 7 6 5 10 10 C 1.53036 * 109.31536 * 174.42035 * 9 7 6 11 11 C 1.53039 * 109.54208 * 298.64129 * 10 9 7 12 12 C 1.52756 * 109.38536 * 61.23505 * 11 10 9 13 13 N 1.46922 * 109.59045 * 289.93126 * 7 6 5 14 14 C 1.34774 * 120.62873 * 6.57790 * 13 7 6 15 15 O 1.21276 * 120.00209 * 354.14426 * 14 13 7 16 16 C 1.50702 * 120.00055 * 174.13328 * 14 13 7 17 17 H 1.09003 * 109.47269 * 320.00525 * 16 14 13 18 18 N 1.46898 * 109.47303 * 200.00459 * 16 14 13 19 19 C 1.52994 * 109.46899 * 80.00801 * 16 14 13 20 20 C 1.53002 * 109.47222 * 185.00134 * 19 16 14 21 21 C 1.50705 * 109.46963 * 179.97438 * 20 19 16 22 22 H 1.07998 * 120.00014 * 359.72375 * 21 20 19 23 23 C 1.37875 * 119.99819 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99898 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00143 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47194 * 59.99891 * 25 23 21 27 27 H 1.48504 * 109.46990 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46818 * 299.99570 * 25 23 21 29 29 H 1.08999 * 109.46770 * 308.37035 * 1 2 3 30 30 H 1.08996 * 109.47115 * 68.37339 * 1 2 3 31 31 H 1.09002 * 109.46726 * 188.37308 * 1 2 3 32 32 H 0.97003 * 119.99769 * 245.00189 * 5 2 1 33 33 H 1.09000 * 109.47234 * 45.00060 * 6 5 2 34 34 H 1.09003 * 109.47176 * 285.00259 * 6 5 2 35 35 H 1.09001 * 109.49774 * 294.37745 * 9 7 6 36 36 H 1.09007 * 109.49562 * 54.43788 * 9 7 6 37 37 H 1.09004 * 109.45707 * 58.66062 * 10 9 7 38 38 H 1.08998 * 109.46221 * 178.61335 * 10 9 7 39 39 H 1.09001 * 109.49973 * 181.31872 * 11 10 9 40 40 H 1.09008 * 109.49401 * 301.38032 * 11 10 9 41 41 H 1.08996 * 109.51391 * 185.71092 * 12 11 10 42 42 H 1.08999 * 109.43608 * 65.42551 * 12 11 10 43 43 H 1.00895 * 111.00575 * 176.05090 * 18 16 14 44 44 H 1.00903 * 110.99982 * 300.00520 * 18 16 14 45 45 H 1.09000 * 109.47484 * 64.99502 * 19 16 14 46 46 H 1.09006 * 109.47139 * 304.99571 * 19 16 14 47 47 H 1.08994 * 109.47082 * 59.99585 * 20 19 16 48 48 H 1.08996 * 109.47118 * 299.99559 * 20 19 16 49 49 H 0.97002 * 119.99818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2273 -0.5911 1.4907 6 6 1.8909 -1.9707 1.8506 7 6 2.6877 -2.3831 3.0899 8 1 2.5760 -1.6251 3.8652 9 6 2.1727 -3.7302 3.6068 10 6 3.0616 -4.2036 4.7590 11 6 4.4939 -4.3952 4.2552 12 6 5.0343 -3.0610 3.7439 13 7 4.1075 -2.5230 2.7387 14 6 4.5503 -2.1697 1.5158 15 8 3.7609 -1.8325 0.6590 16 6 6.0264 -2.1935 1.2130 17 1 6.5799 -1.8172 2.0733 18 7 6.3005 -1.3455 0.0453 19 6 6.4625 -3.6292 0.9141 20 6 7.9807 -3.6731 0.7294 21 6 8.4104 -5.0874 0.4357 22 1 7.6747 -5.8768 0.3901 23 6 9.7433 -5.3746 0.2313 24 7 10.6397 -4.4141 0.2922 25 14 10.2759 -7.1275 -0.1336 26 1 9.6129 -7.5978 -1.3763 27 1 11.7494 -7.1700 -0.3127 28 1 9.8886 -8.0081 0.9978 29 1 -0.3633 0.6379 0.8057 30 1 -0.3633 0.3787 -0.9553 31 1 -0.3633 -1.0168 0.1497 32 1 2.6922 -0.0237 2.1255 33 1 2.1394 -2.6334 1.0217 34 1 0.8243 -2.0406 2.0645 35 1 1.1480 -3.6163 3.9608 36 1 2.1997 -4.4635 2.8008 37 1 3.0531 -3.4581 5.5542 38 1 2.6827 -5.1500 5.1449 39 1 5.1214 -4.7548 5.0707 40 1 4.4998 -5.1229 3.4436 41 1 6.0144 -3.2142 3.2922 42 1 5.1181 -2.3611 4.5752 43 1 7.2910 -1.2932 -0.1393 44 1 5.7984 -1.6739 -0.7660 45 1 5.9754 -3.9746 0.0022 46 1 6.1788 -4.2755 1.7448 47 1 8.4678 -3.3277 1.6413 48 1 8.2645 -3.0269 -0.1011 49 1 11.5775 -4.6161 0.1480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424087525.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:23 Heat of formation + Delta-G solvation = -81.647258 kcal Electronic energy + Delta-G solvation = -31121.172837 eV Core-core repulsion = 27018.396423 eV Total energy + Delta-G solvation = -4102.776414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.63034 -37.42415 -36.79023 -36.06612 -35.51415 -34.54388 -32.87865 -32.67368 -31.26459 -29.80824 -29.52186 -26.97123 -26.09577 -24.42962 -23.75856 -22.08689 -20.87766 -20.39875 -19.32372 -18.59826 -17.42887 -17.05452 -16.41936 -16.22936 -16.03319 -15.87955 -15.08458 -14.80931 -14.66204 -14.62703 -14.38893 -14.00642 -13.75339 -13.58728 -13.49315 -13.28438 -13.01100 -12.89170 -12.78448 -12.61364 -12.51733 -12.05890 -11.80244 -11.70695 -11.60580 -11.44809 -11.33927 -11.07999 -11.01696 -10.87882 -10.82634 -10.74172 -10.68773 -10.56756 -9.91395 -9.66536 -9.25246 -9.21577 -8.72865 -8.40937 -8.34245 -7.99924 -6.05762 -4.08808 0.46548 2.90388 3.05877 3.14704 3.29631 3.34710 3.37013 4.05843 4.34467 4.38589 4.41862 4.60306 4.65959 4.69606 4.93043 4.97904 5.02078 5.08778 5.13155 5.21736 5.29615 5.32626 5.40086 5.48051 5.51937 5.59100 5.66911 5.71798 5.78854 5.83149 5.85912 5.90019 5.95529 6.09002 6.24483 6.36838 6.59411 6.68873 6.93610 7.13747 7.50070 7.56057 7.65913 7.76041 7.91520 8.05131 8.34507 8.63123 8.97026 9.55824 11.05048 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.003401 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.146742 B = 8230.431937 C = 9702.791448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.690 4.690 2 S 2.625 3.375 3 O -0.971 6.971 4 O -0.919 6.919 5 N -1.093 6.093 6 C 0.126 3.874 7 C 0.145 3.855 8 H 0.073 0.927 9 C -0.130 4.130 10 C -0.116 4.116 11 C -0.137 4.137 12 C 0.103 3.897 13 N -0.616 5.616 14 C 0.515 3.485 15 O -0.495 6.495 16 C 0.075 3.925 17 H 0.091 0.909 18 N -0.831 5.831 19 C -0.139 4.139 20 C 0.025 3.975 21 C -0.523 4.523 22 H 0.053 0.947 23 C 0.059 3.941 24 N -0.893 5.893 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.409 0.591 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.351 0.649 44 H 0.348 0.652 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.016 0.984 48 H 0.018 0.982 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.625 5.265 9.685 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.837 4.837 2 S 2.713 3.287 3 O -0.962 6.962 4 O -0.909 6.909 5 N -0.851 5.851 6 C 0.000 4.000 7 C 0.040 3.960 8 H 0.091 0.909 9 C -0.170 4.170 10 C -0.154 4.154 11 C -0.176 4.176 12 C -0.020 4.020 13 N -0.353 5.353 14 C 0.303 3.697 15 O -0.368 6.368 16 C -0.040 4.040 17 H 0.109 0.891 18 N -0.363 5.363 19 C -0.179 4.179 20 C -0.012 4.012 21 C -0.561 4.561 22 H 0.072 0.928 23 C -0.143 4.143 24 N -0.532 5.532 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.203 1.203 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.242 0.758 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.035 0.965 48 H 0.036 0.964 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.724 6.244 8.766 24.244 hybrid contribution 0.377 -1.855 0.235 1.908 sum -21.347 4.389 9.000 23.579 Atomic orbital electron populations 1.30761 1.31551 1.10742 1.10633 1.04579 0.76208 0.73848 0.74066 1.93578 1.77691 1.38721 1.86177 1.93643 1.74821 1.60625 1.61770 1.55353 1.73481 1.19919 1.36395 1.21465 0.95672 0.84325 0.98525 1.21320 0.81362 0.96978 0.96325 0.90896 1.21941 0.99200 0.96759 0.99059 1.21480 0.95246 1.01304 0.97365 1.21854 0.96338 0.97764 1.01597 1.21753 0.94090 0.94491 0.91642 1.48055 1.07538 1.65859 1.13830 1.20933 0.91486 0.76044 0.81203 1.90772 1.55365 1.45468 1.45212 1.21488 0.91470 0.94858 0.96227 0.89127 1.58741 1.14851 1.54881 1.07802 1.22438 1.01230 0.93138 1.01083 1.19086 0.87689 0.97295 0.97110 1.21140 0.92413 0.93877 1.48654 0.92842 1.25007 0.96815 0.97112 0.95342 1.69945 1.01615 1.31949 1.49696 0.86661 0.77441 0.85016 0.78904 1.20242 1.21257 1.20264 0.86130 0.86097 0.85997 0.75803 0.87470 0.93418 0.90891 0.90956 0.91915 0.91670 0.90566 0.91034 0.88266 0.91820 0.83367 0.83801 0.92679 0.92521 0.96530 0.96424 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.69 -5.14 10.89 101.05 1.10 -4.04 16 2 S 2.62 32.13 5.79 -107.50 -0.62 31.51 16 3 O -0.97 -15.43 18.08 -57.54 -1.04 -16.47 16 4 O -0.92 -15.23 15.12 -67.09 -1.01 -16.24 16 5 N -1.09 -11.86 3.85 -10.61 -0.04 -11.90 16 6 C 0.13 1.25 4.82 -4.04 -0.02 1.23 16 7 C 0.15 1.35 2.95 -67.60 -0.20 1.15 16 8 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 9 C -0.13 -1.01 5.36 -26.61 -0.14 -1.16 16 10 C -0.12 -0.88 5.89 -26.69 -0.16 -1.04 16 11 C -0.14 -1.31 6.06 -26.84 -0.16 -1.48 16 12 C 0.10 1.13 5.69 -3.93 -0.02 1.11 16 13 N -0.62 -7.40 2.98 -165.48 -0.49 -7.89 16 14 C 0.52 8.04 6.65 -10.99 -0.07 7.96 16 15 O -0.49 -8.37 7.38 -18.49 -0.14 -8.51 16 16 C 0.07 1.29 2.35 -68.87 -0.16 1.12 16 17 H 0.09 1.51 7.12 -51.93 -0.37 1.14 16 18 N -0.83 -15.14 8.94 -5.66 -0.05 -15.19 16 19 C -0.14 -2.73 4.40 -26.73 -0.12 -2.85 16 20 C 0.03 0.62 4.74 -27.88 -0.13 0.48 16 21 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 22 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 25 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.12 0.70 8.14 -51.92 -0.42 0.27 16 30 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.12 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.41 4.27 8.62 -34.47 -0.30 3.98 16 33 H 0.11 1.36 5.95 -51.93 -0.31 1.05 16 34 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 41 H 0.10 1.28 4.58 -51.93 -0.24 1.04 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.35 6.46 7.55 -39.29 -0.30 6.16 16 44 H 0.35 6.64 8.58 -39.29 -0.34 6.30 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 1.05 6.50 -51.93 -0.34 0.71 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 49 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -35.56 386.42 -10.36 -45.91 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -8.00 Total: 12.64 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.50 Total: -10.58 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.15 Total: -60.38 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -2.19 Total: -41.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 32.13 SS G_CDS: -0.62 Total: 31.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.56 -10.36 -45.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424087525.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.733 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds