Wall clock time and date at job start Wed Apr 1 2020 04:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42096 * 110.54139 * 2 1 4 4 O 1.42097 * 110.54177 * 223.25643 * 2 1 3 5 5 N 1.65598 * 104.45233 * 111.62832 * 2 1 3 6 6 C 1.46497 * 119.99970 * 64.99739 * 5 2 1 7 7 C 1.52998 * 109.46867 * 165.00076 * 6 5 2 8 8 H 1.09002 * 109.58559 * 50.21832 * 7 6 5 9 9 C 1.53197 * 109.58695 * 170.64028 * 7 6 5 10 10 C 1.53036 * 109.31536 * 174.42035 * 9 7 6 11 11 C 1.53039 * 109.54208 * 298.64129 * 10 9 7 12 12 C 1.52756 * 109.38536 * 61.23505 * 11 10 9 13 13 N 1.46922 * 109.59045 * 289.93126 * 7 6 5 14 14 C 1.34774 * 120.62873 * 6.57790 * 13 7 6 15 15 O 1.21276 * 120.00209 * 354.14426 * 14 13 7 16 16 C 1.50702 * 120.00055 * 174.13328 * 14 13 7 17 17 H 1.09003 * 109.47269 * 320.00525 * 16 14 13 18 18 N 1.46898 * 109.47303 * 200.00459 * 16 14 13 19 19 C 1.52994 * 109.46899 * 80.00801 * 16 14 13 20 20 C 1.53002 * 109.47222 * 185.00134 * 19 16 14 21 21 C 1.50705 * 109.46963 * 179.97438 * 20 19 16 22 22 H 1.07998 * 120.00014 * 359.72375 * 21 20 19 23 23 C 1.37875 * 119.99819 * 180.02562 * 21 20 19 24 24 N 1.31522 * 119.99898 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00143 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47194 * 59.99891 * 25 23 21 27 27 H 1.48504 * 109.46990 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46818 * 299.99570 * 25 23 21 29 29 H 1.08999 * 109.46770 * 308.37035 * 1 2 3 30 30 H 1.08996 * 109.47115 * 68.37339 * 1 2 3 31 31 H 1.09002 * 109.46726 * 188.37308 * 1 2 3 32 32 H 0.97003 * 119.99769 * 245.00189 * 5 2 1 33 33 H 1.09000 * 109.47234 * 45.00060 * 6 5 2 34 34 H 1.09003 * 109.47176 * 285.00259 * 6 5 2 35 35 H 1.09001 * 109.49774 * 294.37745 * 9 7 6 36 36 H 1.09007 * 109.49562 * 54.43788 * 9 7 6 37 37 H 1.09004 * 109.45707 * 58.66062 * 10 9 7 38 38 H 1.08998 * 109.46221 * 178.61335 * 10 9 7 39 39 H 1.09001 * 109.49973 * 181.31872 * 11 10 9 40 40 H 1.09008 * 109.49401 * 301.38032 * 11 10 9 41 41 H 1.08996 * 109.51391 * 185.71092 * 12 11 10 42 42 H 1.08999 * 109.43608 * 65.42551 * 12 11 10 43 43 H 1.00895 * 111.00575 * 176.05090 * 18 16 14 44 44 H 1.00903 * 110.99982 * 300.00520 * 18 16 14 45 45 H 1.09000 * 109.47484 * 64.99502 * 19 16 14 46 46 H 1.09006 * 109.47139 * 304.99571 * 19 16 14 47 47 H 1.08994 * 109.47082 * 59.99585 * 20 19 16 48 48 H 1.08996 * 109.47118 * 299.99559 * 20 19 16 49 49 H 0.97002 * 119.99818 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2273 -0.5911 1.4907 6 6 1.8909 -1.9707 1.8506 7 6 2.6877 -2.3831 3.0899 8 1 2.5760 -1.6251 3.8652 9 6 2.1727 -3.7302 3.6068 10 6 3.0616 -4.2036 4.7590 11 6 4.4939 -4.3952 4.2552 12 6 5.0343 -3.0610 3.7439 13 7 4.1075 -2.5230 2.7387 14 6 4.5503 -2.1697 1.5158 15 8 3.7609 -1.8325 0.6590 16 6 6.0264 -2.1935 1.2130 17 1 6.5799 -1.8172 2.0733 18 7 6.3005 -1.3455 0.0453 19 6 6.4625 -3.6292 0.9141 20 6 7.9807 -3.6731 0.7294 21 6 8.4104 -5.0874 0.4357 22 1 7.6747 -5.8768 0.3901 23 6 9.7433 -5.3746 0.2313 24 7 10.6397 -4.4141 0.2922 25 14 10.2759 -7.1275 -0.1336 26 1 9.6129 -7.5978 -1.3763 27 1 11.7494 -7.1700 -0.3127 28 1 9.8886 -8.0081 0.9978 29 1 -0.3633 0.6379 0.8057 30 1 -0.3633 0.3787 -0.9553 31 1 -0.3633 -1.0168 0.1497 32 1 2.6922 -0.0237 2.1255 33 1 2.1394 -2.6334 1.0217 34 1 0.8243 -2.0406 2.0645 35 1 1.1480 -3.6163 3.9608 36 1 2.1997 -4.4635 2.8008 37 1 3.0531 -3.4581 5.5542 38 1 2.6827 -5.1500 5.1449 39 1 5.1214 -4.7548 5.0707 40 1 4.4998 -5.1229 3.4436 41 1 6.0144 -3.2142 3.2922 42 1 5.1181 -2.3611 4.5752 43 1 7.2910 -1.2932 -0.1393 44 1 5.7984 -1.6739 -0.7660 45 1 5.9754 -3.9746 0.0022 46 1 6.1788 -4.2755 1.7448 47 1 8.4678 -3.3277 1.6413 48 1 8.2645 -3.0269 -0.1011 49 1 11.5775 -4.6161 0.1480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424087525.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:22 Heat of formation + Delta-G solvation = -110.099839 kcal Electronic energy + Delta-G solvation = -31122.406633 eV Core-core repulsion = 27018.396423 eV Total energy + Delta-G solvation = -4104.010210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66471 -38.47135 -37.86579 -37.33846 -36.59848 -35.71015 -34.72232 -33.65924 -32.06355 -31.65681 -30.18110 -28.33641 -27.28769 -25.66145 -25.01544 -23.05856 -22.19254 -21.55728 -20.34456 -19.66018 -18.73937 -18.20466 -17.98565 -17.29123 -16.99113 -16.89427 -16.55394 -16.06551 -15.88719 -15.73455 -15.47920 -15.07411 -14.92310 -14.79675 -14.52101 -14.13661 -13.97475 -13.94038 -13.83021 -13.67999 -13.54081 -13.49219 -13.34674 -12.90832 -12.83169 -12.75056 -12.53821 -12.51880 -12.46504 -12.06827 -11.83345 -11.74640 -11.66102 -11.59672 -11.48408 -11.33372 -11.30963 -10.56560 -10.05862 -10.01084 -9.48140 -9.26529 -8.21547 -6.32526 -0.41215 1.38340 1.40732 1.48588 1.80059 2.05982 2.18963 2.39376 3.11540 3.20983 3.52340 3.60253 3.79523 3.92477 3.94649 4.02373 4.10054 4.14018 4.19118 4.29416 4.30947 4.34813 4.38391 4.54367 4.63136 4.68112 4.77420 4.86682 4.91706 4.94274 5.02440 5.04808 5.09495 5.12560 5.22389 5.29596 5.34851 5.45748 5.55696 5.64418 5.79215 5.82078 6.12425 6.20580 6.34241 6.47439 6.53751 6.82459 7.36478 7.46673 8.89044 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.003401 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.146742 B = 8230.431937 C = 9702.791448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.619 3.381 3 O -1.020 7.020 4 O -0.977 6.977 5 N -1.092 6.092 6 C 0.123 3.877 7 C 0.140 3.860 8 H 0.098 0.902 9 C -0.126 4.126 10 C -0.111 4.111 11 C -0.136 4.136 12 C 0.099 3.901 13 N -0.608 5.608 14 C 0.509 3.491 15 O -0.509 6.509 16 C 0.077 3.923 17 H 0.096 0.904 18 N -0.831 5.831 19 C -0.117 4.117 20 C 0.033 3.967 21 C -0.544 4.544 22 H 0.054 0.946 23 C 0.005 3.995 24 N -0.927 5.927 25 Si 0.960 3.040 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.264 1.264 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.410 0.590 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.347 0.653 44 H 0.342 0.658 45 H 0.037 0.963 46 H 0.066 0.934 47 H 0.000 1.000 48 H -0.004 1.004 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.641 4.433 11.903 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.714 3.286 3 O -1.010 7.010 4 O -0.967 6.967 5 N -0.850 5.850 6 C -0.003 4.003 7 C 0.036 3.964 8 H 0.116 0.884 9 C -0.165 4.165 10 C -0.149 4.149 11 C -0.174 4.174 12 C -0.024 4.024 13 N -0.344 5.344 14 C 0.296 3.704 15 O -0.383 6.383 16 C -0.038 4.038 17 H 0.113 0.887 18 N -0.361 5.361 19 C -0.157 4.157 20 C -0.004 4.004 21 C -0.582 4.582 22 H 0.072 0.928 23 C -0.193 4.193 24 N -0.567 5.567 25 Si 0.784 3.216 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.189 1.189 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.243 0.757 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.018 0.982 48 H 0.014 0.986 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.709 5.401 11.019 27.588 hybrid contribution 1.238 -1.579 -0.418 2.050 sum -23.471 3.821 10.602 26.036 Atomic orbital electron populations 1.30425 1.24800 1.13176 1.12739 1.04264 0.78532 0.72133 0.73691 1.93510 1.80193 1.40576 1.86758 1.93580 1.77832 1.61575 1.63683 1.55105 1.74121 1.20388 1.35421 1.21562 0.98280 0.82960 0.97533 1.21663 0.79182 0.98789 0.96743 0.88392 1.21945 1.00927 0.95037 0.98552 1.21469 0.93325 1.02480 0.97580 1.21839 0.98367 0.96087 1.01087 1.21845 0.92819 0.96003 0.91697 1.48028 1.09262 1.64546 1.12598 1.20554 0.90270 0.77037 0.82535 1.90823 1.55148 1.46330 1.46040 1.21463 0.93750 0.92783 0.95825 0.88662 1.58770 1.14370 1.55049 1.07946 1.22137 0.97732 0.95322 1.00530 1.18930 0.90629 0.95588 0.95255 1.21565 0.92852 0.95158 1.48611 0.92789 1.25886 0.96900 1.01492 0.95054 1.70070 1.01938 1.34149 1.50574 0.85585 0.77056 0.79858 0.79065 1.19774 1.20777 1.18916 0.83358 0.84659 0.83640 0.75669 0.90799 0.88854 0.87653 0.92671 0.90186 0.90543 0.89617 0.93377 0.90927 0.89506 0.83910 0.84522 0.94460 0.91506 0.98200 0.98559 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -7.45 10.89 113.37 1.23 -6.22 16 2 S 2.62 63.45 5.79 -56.49 -0.33 63.13 16 3 O -1.02 -33.17 18.08 -127.65 -2.31 -35.48 16 4 O -0.98 -33.67 15.12 -118.51 -1.79 -35.47 16 5 N -1.09 -22.36 3.85 -187.50 -0.72 -23.08 16 6 C 0.12 2.14 4.82 86.38 0.42 2.56 16 7 C 0.14 2.22 2.95 44.98 0.13 2.35 16 8 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 9 C -0.13 -1.52 5.36 30.67 0.16 -1.35 16 10 C -0.11 -1.30 5.89 30.62 0.18 -1.12 16 11 C -0.14 -2.39 6.06 30.53 0.19 -2.20 16 12 C 0.10 2.06 5.69 86.22 0.49 2.55 16 13 N -0.61 -14.07 2.98 -795.86 -2.37 -16.44 16 14 C 0.51 16.22 6.65 87.66 0.58 16.81 16 15 O -0.51 -17.74 7.38 19.98 0.15 -17.59 16 16 C 0.08 2.78 2.35 44.17 0.10 2.88 16 17 H 0.10 3.31 7.12 -2.39 -0.02 3.30 16 18 N -0.83 -32.24 8.94 -171.81 -1.54 -33.78 16 19 C -0.12 -4.85 4.40 30.59 0.13 -4.71 16 20 C 0.03 1.69 4.74 29.85 0.14 1.84 16 21 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 22 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 23 C 0.01 0.29 5.46 84.65 0.46 0.75 16 24 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 25 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 29 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.15 1.08 8.14 -2.39 -0.02 1.07 16 32 H 0.41 8.14 8.62 -96.74 -0.83 7.31 16 33 H 0.07 1.84 5.95 -2.39 -0.01 1.83 16 34 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.07 1.91 4.58 -2.39 -0.01 1.90 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.35 13.72 7.55 -89.70 -0.68 13.04 16 44 H 0.34 14.00 8.58 -89.69 -0.77 13.24 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 2.59 6.50 -2.38 -0.02 2.57 16 47 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.00 -0.21 6.87 -2.39 -0.02 -0.23 16 49 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -81.45 386.42 -3.43 -84.88 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -1.30 Total: 39.28 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.46 Total: -16.25 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -4.34 Total: -128.59 kcal Atomic # 8 Polarization: -84.58 SS G_CDS: -3.95 Total: -88.54 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 63.45 SS G_CDS: -0.33 Total: 63.13 kcal Total: -81.45 -3.43 -84.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424087525.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.223 kcal (2) G-P(sol) polarization free energy of solvation -81.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds