Wall clock time and date at job start Wed Apr 1 2020 04:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42095 * 110.54526 * 2 1 4 4 O 1.42109 * 110.54027 * 223.25159 * 2 1 3 5 5 N 1.65596 * 104.44960 * 111.62994 * 2 1 3 6 6 C 1.46504 * 120.00316 * 64.99637 * 5 2 1 7 7 H 1.08996 * 110.05114 * 23.58828 * 6 5 2 8 8 C 1.54371 * 110.04658 * 262.11120 * 6 5 2 9 9 C 1.54885 * 104.19747 * 217.08967 * 8 6 5 10 10 C 1.54887 * 102.74750 * 37.97128 * 9 8 6 11 11 C 1.53876 * 110.03141 * 144.99951 * 6 5 2 12 12 H 1.08999 * 110.03191 * 238.61648 * 11 6 5 13 13 C 1.53002 * 110.03460 * 0.02562 * 11 6 5 14 14 N 1.46496 * 109.47131 * 184.30689 * 13 11 6 15 15 C 1.34772 * 119.99985 * 179.97438 * 14 13 11 16 16 O 1.21276 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99926 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46710 * 40.00386 * 17 15 14 19 19 N 1.46898 * 109.47045 * 160.00562 * 17 15 14 20 20 C 1.52996 * 109.47058 * 280.00535 * 17 15 14 21 21 C 1.52998 * 109.46929 * 175.00132 * 20 17 15 22 22 C 1.50706 * 109.47348 * 179.97438 * 21 20 17 23 23 H 1.08005 * 119.99758 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00102 * 179.97438 * 22 21 20 25 25 N 1.31516 * 120.00217 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99766 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00068 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00417 * 26 24 22 30 30 H 1.08996 * 109.47063 * 308.37820 * 1 2 3 31 31 H 1.09006 * 109.46816 * 68.37301 * 1 2 3 32 32 H 1.08996 * 109.47487 * 188.37126 * 1 2 3 33 33 H 0.97003 * 119.99994 * 244.99611 * 5 2 1 34 34 H 1.09000 * 110.45845 * 98.41883 * 8 6 5 35 35 H 1.09003 * 110.61801 * 335.83738 * 8 6 5 36 36 H 1.08994 * 110.75612 * 279.65373 * 9 8 6 37 37 H 1.09004 * 110.91299 * 156.36034 * 9 8 6 38 38 H 1.09006 * 110.48752 * 203.37674 * 10 9 8 39 39 H 1.08998 * 110.48724 * 80.73922 * 10 9 8 40 40 H 1.08993 * 109.47314 * 64.30290 * 13 11 6 41 41 H 1.09004 * 109.46454 * 304.30268 * 13 11 6 42 42 H 0.96998 * 119.99812 * 0.02562 * 14 13 11 43 43 H 1.00903 * 111.00091 * 296.04909 * 19 17 15 44 44 H 1.00898 * 110.99837 * 59.99839 * 19 17 15 45 45 H 1.09000 * 109.47441 * 55.00222 * 20 17 15 46 46 H 1.09002 * 109.47087 * 294.99668 * 20 17 15 47 47 H 1.09001 * 109.47671 * 60.00109 * 21 20 17 48 48 H 1.09006 * 109.47297 * 299.99829 * 21 20 17 49 49 H 0.97001 * 119.99646 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9118 5 7 2.2272 -0.5911 1.4907 6 6 1.8907 -1.9708 1.8507 7 1 1.7696 -2.5730 0.9503 8 6 0.5922 -1.9982 2.6851 9 6 0.8340 -3.1184 3.7272 10 6 2.3309 -2.9382 4.0816 11 6 2.9956 -2.5680 2.7396 12 1 3.4112 -3.4597 2.2703 13 6 4.0995 -1.5338 2.9697 14 7 5.1917 -2.1462 3.7300 15 6 6.2797 -1.4188 4.0513 16 8 6.3545 -0.2570 3.7115 17 6 7.4031 -2.0487 4.8340 18 1 7.5686 -3.0654 4.4776 19 7 8.6291 -1.2602 4.6518 20 6 7.0342 -2.0823 6.3184 21 6 8.1173 -2.8325 7.0962 22 6 7.7543 -2.8651 8.5585 23 1 6.8425 -2.3971 8.8991 24 6 8.5862 -3.4923 9.4615 25 7 9.6968 -4.0618 9.0469 26 14 8.1366 -3.5321 11.2742 27 1 9.1872 -4.2614 12.0289 28 1 8.0309 -2.1430 11.7886 29 1 6.8339 -4.2240 11.4460 30 1 -0.3633 0.6380 0.8056 31 1 -0.3633 0.3788 -0.9554 32 1 -0.3634 -1.0167 0.1496 33 1 2.6921 -0.0238 2.1255 34 1 -0.2616 -2.2427 2.0533 35 1 0.4356 -1.0413 3.1830 36 1 0.6565 -4.0998 3.2875 37 1 0.2082 -2.9724 4.6076 38 1 2.7460 -3.8687 4.4690 39 1 2.4574 -2.1327 4.8050 40 1 3.6958 -0.6899 3.5292 41 1 4.4768 -1.1852 2.0083 42 1 5.1320 -3.0755 4.0015 43 1 8.9296 -1.2763 3.6887 44 1 8.5011 -0.3130 4.9749 45 1 6.0784 -2.5911 6.4439 46 1 6.9556 -1.0629 6.6964 47 1 9.0731 -2.3238 6.9708 48 1 8.1959 -3.8519 6.7182 49 1 9.9304 -4.0408 8.1057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424139911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:04 Heat of formation + Delta-G solvation = -130.928191 kcal Electronic energy + Delta-G solvation = -29187.543532 eV Core-core repulsion = 25082.630136 eV Total energy + Delta-G solvation = -4104.913396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25856 -39.20346 -37.48795 -36.35770 -35.43587 -34.74835 -33.94548 -33.05085 -30.54866 -29.98133 -29.76339 -27.68802 -26.48909 -24.82763 -23.12141 -21.39305 -20.94863 -20.56214 -19.83950 -19.77730 -18.31444 -17.46825 -16.76621 -16.60797 -16.42997 -16.18351 -15.90922 -15.64255 -15.43172 -15.02930 -14.49547 -14.18432 -13.94493 -13.74349 -13.68228 -13.59296 -13.57465 -13.10788 -12.81791 -12.67336 -12.58830 -12.49163 -12.40056 -12.15397 -11.71253 -11.56626 -11.54197 -11.46074 -11.29234 -11.20631 -11.06631 -10.82622 -10.73989 -10.27848 -10.09350 -9.98050 -9.95377 -9.68639 -9.11873 -8.52311 -8.35777 -8.22421 -6.29081 -3.97673 -0.19433 2.22576 2.72420 3.16002 3.36475 3.45851 3.48495 3.67001 3.69873 3.95775 4.02643 4.18513 4.28504 4.43741 4.58976 4.65820 4.70395 4.81075 4.87419 4.95892 4.98924 5.06035 5.09522 5.13233 5.16385 5.32889 5.42143 5.48669 5.50574 5.56037 5.61344 5.72548 5.74618 5.83317 5.92284 6.29860 6.37522 6.48803 6.51827 6.92932 7.29224 7.49802 7.53957 7.70858 7.74096 8.25598 8.28906 8.54263 8.96238 9.74329 11.11926 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017066 B = 0.002202 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.308882 B =12711.903261 C =13784.632509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.609 3.391 3 O -0.956 6.956 4 O -0.956 6.956 5 N -1.116 6.116 6 C 0.151 3.849 7 H 0.101 0.899 8 C -0.148 4.148 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.107 4.107 12 H 0.092 0.908 13 C 0.123 3.877 14 N -0.729 5.729 15 C 0.482 3.518 16 O -0.552 6.552 17 C 0.077 3.923 18 H 0.096 0.904 19 N -0.809 5.809 20 C -0.087 4.087 21 C 0.018 3.982 22 C -0.604 4.604 23 H 0.045 0.955 24 C 0.014 3.986 25 N -0.913 5.913 26 Si 1.067 2.933 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.289 1.289 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.422 0.578 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.403 0.597 43 H 0.335 0.665 44 H 0.348 0.652 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.026 0.974 48 H 0.003 0.997 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.037 2.861 -18.554 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.701 3.299 3 O -0.947 6.947 4 O -0.946 6.946 5 N -0.877 5.877 6 C 0.043 3.957 7 H 0.119 0.881 8 C -0.187 4.187 9 C -0.160 4.160 10 C -0.162 4.162 11 C -0.128 4.128 12 H 0.110 0.890 13 C -0.002 4.002 14 N -0.382 5.382 15 C 0.268 3.732 16 O -0.429 6.429 17 C -0.039 4.039 18 H 0.114 0.886 19 N -0.337 5.337 20 C -0.125 4.125 21 C -0.019 4.019 22 C -0.642 4.642 23 H 0.063 0.937 24 C -0.189 4.189 25 N -0.550 5.550 26 Si 0.896 3.104 27 H -0.208 1.208 28 H -0.215 1.215 29 H -0.216 1.216 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.260 0.740 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.237 0.763 43 H 0.147 0.853 44 H 0.163 0.837 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.044 0.956 48 H 0.021 0.979 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.609 2.827 -17.633 28.811 hybrid contribution -1.832 0.857 -1.506 2.522 sum -24.440 3.684 -19.139 31.260 Atomic orbital electron populations 1.30589 1.28487 1.11628 1.11642 1.04874 0.77604 0.74000 0.73452 1.93646 1.77802 1.37577 1.85631 1.93629 1.76927 1.61845 1.62195 1.55872 1.73899 1.21190 1.36692 1.21536 0.94045 0.81382 0.98734 0.88072 1.23057 0.96776 1.00592 0.98312 1.22427 0.96419 0.98411 0.98700 1.22521 0.95022 1.02556 0.96078 1.22223 0.94857 0.98984 0.96696 0.88971 1.21374 0.86813 0.95481 0.96486 1.46133 1.19084 1.15626 1.57368 1.22689 0.84256 0.87145 0.79124 1.90659 1.80326 1.17145 1.54794 1.21846 0.86218 0.97963 0.97898 0.88561 1.59011 1.29914 1.19172 1.25596 1.21500 1.00445 1.01483 0.89075 1.19133 0.94218 0.94118 0.94414 1.22075 1.09420 1.39616 0.93112 0.93701 1.25785 0.93847 0.93604 1.05706 1.70758 1.23427 1.42002 1.18791 0.83578 0.75544 0.76291 0.75023 1.20823 1.21547 1.21616 0.85122 0.85368 0.85379 0.74001 0.91002 0.90200 0.90992 0.90909 0.90658 0.90704 0.91570 0.91099 0.76285 0.85328 0.83750 0.92704 0.92734 0.95561 0.97856 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.98 10.88 101.05 1.10 -0.88 16 2 S 2.61 18.60 6.08 -107.50 -0.65 17.94 16 3 O -0.96 -10.85 18.08 -57.54 -1.04 -11.89 16 4 O -0.96 -10.17 17.42 -57.54 -1.00 -11.17 16 5 N -1.12 -7.04 4.47 -3.89 -0.02 -7.06 16 6 C 0.15 0.82 3.46 -66.75 -0.23 0.58 16 7 H 0.10 0.47 7.52 -51.93 -0.39 0.08 16 8 C -0.15 -0.57 6.48 -25.02 -0.16 -0.74 16 9 C -0.12 -0.56 6.91 -24.74 -0.17 -0.74 16 10 C -0.12 -0.78 6.05 -25.07 -0.15 -0.93 16 11 C -0.11 -0.71 2.97 -89.50 -0.27 -0.98 16 12 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 13 C 0.12 1.21 3.66 -4.04 -0.01 1.20 16 14 N -0.73 -8.44 5.39 -60.30 -0.33 -8.77 16 15 C 0.48 7.43 7.07 -10.98 -0.08 7.35 16 16 O -0.55 -10.12 16.25 5.56 0.09 -10.03 16 17 C 0.08 1.26 3.15 -68.86 -0.22 1.05 16 18 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 19 N -0.81 -13.64 8.44 -5.65 -0.05 -13.69 16 20 C -0.09 -1.73 4.78 -26.73 -0.13 -1.86 16 21 C 0.02 0.46 4.17 -27.88 -0.12 0.34 16 22 C -0.60 -17.16 9.11 -34.44 -0.31 -17.47 16 23 H 0.04 1.25 7.74 -52.48 -0.41 0.85 16 24 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 25 N -0.91 -28.18 13.65 55.43 0.76 -27.43 16 26 Si 1.07 25.39 29.90 -169.99 -5.08 20.31 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 30 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.13 0.18 7.59 -51.93 -0.39 -0.22 16 33 H 0.42 2.84 6.47 -34.47 -0.22 2.62 16 34 H 0.07 0.16 7.64 -51.93 -0.40 -0.24 16 35 H 0.08 0.30 8.06 -51.93 -0.42 -0.12 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.57 7.77 -51.93 -0.40 0.16 16 40 H 0.07 0.68 7.02 -51.93 -0.36 0.31 16 41 H 0.07 0.80 7.57 -51.93 -0.39 0.40 16 42 H 0.40 3.89 8.33 -40.82 -0.34 3.55 16 43 H 0.33 4.94 9.06 -39.29 -0.36 4.59 16 44 H 0.35 6.02 8.58 -39.29 -0.34 5.68 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.03 0.71 7.62 -51.93 -0.40 0.32 16 48 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 49 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -39.17 404.62 -10.20 -49.37 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -8.13 Total: 9.06 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -0.85 Total: -12.75 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.37 Total: -56.94 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.95 Total: -33.10 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Atomic # 16 Polarization: 18.60 SS G_CDS: -0.65 Total: 17.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.17 -10.20 -49.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.555 kcal (2) G-P(sol) polarization free energy of solvation -39.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds