Wall clock time and date at job start Wed Apr 1 2020 04:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42095 * 110.54526 * 2 1 4 4 O 1.42109 * 110.54027 * 223.25159 * 2 1 3 5 5 N 1.65596 * 104.44960 * 111.62994 * 2 1 3 6 6 C 1.46504 * 120.00316 * 64.99637 * 5 2 1 7 7 H 1.08996 * 110.05114 * 23.58828 * 6 5 2 8 8 C 1.54371 * 110.04658 * 262.11120 * 6 5 2 9 9 C 1.54885 * 104.19747 * 217.08967 * 8 6 5 10 10 C 1.54887 * 102.74750 * 37.97128 * 9 8 6 11 11 C 1.53876 * 110.03141 * 144.99951 * 6 5 2 12 12 H 1.08999 * 110.03191 * 238.61648 * 11 6 5 13 13 C 1.53002 * 110.03460 * 0.02562 * 11 6 5 14 14 N 1.46496 * 109.47131 * 184.30689 * 13 11 6 15 15 C 1.34772 * 119.99985 * 179.97438 * 14 13 11 16 16 O 1.21276 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99926 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46710 * 40.00386 * 17 15 14 19 19 N 1.46898 * 109.47045 * 160.00562 * 17 15 14 20 20 C 1.52996 * 109.47058 * 280.00535 * 17 15 14 21 21 C 1.52998 * 109.46929 * 175.00132 * 20 17 15 22 22 C 1.50706 * 109.47348 * 179.97438 * 21 20 17 23 23 H 1.08005 * 119.99758 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00102 * 179.97438 * 22 21 20 25 25 N 1.31516 * 120.00217 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99766 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00068 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00417 * 26 24 22 30 30 H 1.08996 * 109.47063 * 308.37820 * 1 2 3 31 31 H 1.09006 * 109.46816 * 68.37301 * 1 2 3 32 32 H 1.08996 * 109.47487 * 188.37126 * 1 2 3 33 33 H 0.97003 * 119.99994 * 244.99611 * 5 2 1 34 34 H 1.09000 * 110.45845 * 98.41883 * 8 6 5 35 35 H 1.09003 * 110.61801 * 335.83738 * 8 6 5 36 36 H 1.08994 * 110.75612 * 279.65373 * 9 8 6 37 37 H 1.09004 * 110.91299 * 156.36034 * 9 8 6 38 38 H 1.09006 * 110.48752 * 203.37674 * 10 9 8 39 39 H 1.08998 * 110.48724 * 80.73922 * 10 9 8 40 40 H 1.08993 * 109.47314 * 64.30290 * 13 11 6 41 41 H 1.09004 * 109.46454 * 304.30268 * 13 11 6 42 42 H 0.96998 * 119.99812 * 0.02562 * 14 13 11 43 43 H 1.00903 * 111.00091 * 296.04909 * 19 17 15 44 44 H 1.00898 * 110.99837 * 59.99839 * 19 17 15 45 45 H 1.09000 * 109.47441 * 55.00222 * 20 17 15 46 46 H 1.09002 * 109.47087 * 294.99668 * 20 17 15 47 47 H 1.09001 * 109.47671 * 60.00109 * 21 20 17 48 48 H 1.09006 * 109.47297 * 299.99829 * 21 20 17 49 49 H 0.97001 * 119.99646 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9118 5 7 2.2272 -0.5911 1.4907 6 6 1.8907 -1.9708 1.8507 7 1 1.7696 -2.5730 0.9503 8 6 0.5922 -1.9982 2.6851 9 6 0.8340 -3.1184 3.7272 10 6 2.3309 -2.9382 4.0816 11 6 2.9956 -2.5680 2.7396 12 1 3.4112 -3.4597 2.2703 13 6 4.0995 -1.5338 2.9697 14 7 5.1917 -2.1462 3.7300 15 6 6.2797 -1.4188 4.0513 16 8 6.3545 -0.2570 3.7115 17 6 7.4031 -2.0487 4.8340 18 1 7.5686 -3.0654 4.4776 19 7 8.6291 -1.2602 4.6518 20 6 7.0342 -2.0823 6.3184 21 6 8.1173 -2.8325 7.0962 22 6 7.7543 -2.8651 8.5585 23 1 6.8425 -2.3971 8.8991 24 6 8.5862 -3.4923 9.4615 25 7 9.6968 -4.0618 9.0469 26 14 8.1366 -3.5321 11.2742 27 1 9.1872 -4.2614 12.0289 28 1 8.0309 -2.1430 11.7886 29 1 6.8339 -4.2240 11.4460 30 1 -0.3633 0.6380 0.8056 31 1 -0.3633 0.3788 -0.9554 32 1 -0.3634 -1.0167 0.1496 33 1 2.6921 -0.0238 2.1255 34 1 -0.2616 -2.2427 2.0533 35 1 0.4356 -1.0413 3.1830 36 1 0.6565 -4.0998 3.2875 37 1 0.2082 -2.9724 4.6076 38 1 2.7460 -3.8687 4.4690 39 1 2.4574 -2.1327 4.8050 40 1 3.6958 -0.6899 3.5292 41 1 4.4768 -1.1852 2.0083 42 1 5.1320 -3.0755 4.0015 43 1 8.9296 -1.2763 3.6887 44 1 8.5011 -0.3130 4.9749 45 1 6.0784 -2.5911 6.4439 46 1 6.9556 -1.0629 6.6964 47 1 9.0731 -2.3238 6.9708 48 1 8.1959 -3.8519 6.7182 49 1 9.9304 -4.0408 8.1057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424139911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:02 Heat of formation + Delta-G solvation = -164.416383 kcal Electronic energy + Delta-G solvation = -29188.995689 eV Core-core repulsion = 25082.630136 eV Total energy + Delta-G solvation = -4106.365553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.26881 -39.97706 -38.17665 -37.04110 -37.03082 -35.78524 -35.04268 -34.41165 -31.80320 -31.14775 -30.18561 -28.15321 -27.90760 -26.09910 -24.69836 -22.70479 -21.72956 -21.41794 -20.78619 -20.39288 -19.02967 -18.89509 -18.18748 -17.49109 -17.31261 -17.02265 -16.97882 -16.37805 -16.18013 -16.01081 -15.61515 -15.46447 -15.18388 -14.83092 -14.78106 -14.44629 -14.13876 -13.95675 -13.92692 -13.67009 -13.49492 -13.35148 -13.26592 -13.14889 -13.11517 -12.63615 -12.37418 -12.21750 -12.05676 -12.03346 -11.89611 -11.84980 -11.82574 -11.81648 -11.68974 -11.47240 -11.32890 -10.60407 -10.47245 -10.43306 -10.16247 -9.72595 -8.61432 -6.31300 -0.69194 1.44581 1.54745 1.63319 1.72087 1.82303 2.13589 2.61181 2.88129 3.22103 3.23004 3.43676 3.51605 3.55921 3.68325 3.82769 4.00232 4.03653 4.17049 4.19919 4.24777 4.27340 4.35801 4.40957 4.55755 4.63339 4.63707 4.74164 4.76145 4.81996 4.87313 4.95714 5.08377 5.08704 5.25527 5.29573 5.33733 5.40890 5.44902 5.53087 5.63316 5.95897 5.99693 6.06667 6.27255 6.37329 6.45465 6.66528 7.09051 7.50189 8.79547 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017066 B = 0.002202 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.308882 B =12711.903261 C =13784.632509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.608 3.392 3 O -1.009 7.009 4 O -1.000 7.000 5 N -1.117 6.117 6 C 0.148 3.852 7 H 0.112 0.888 8 C -0.144 4.144 9 C -0.119 4.119 10 C -0.125 4.125 11 C -0.103 4.103 12 H 0.100 0.900 13 C 0.121 3.879 14 N -0.712 5.712 15 C 0.486 3.514 16 O -0.583 6.583 17 C 0.084 3.916 18 H 0.111 0.889 19 N -0.821 5.821 20 C -0.073 4.073 21 C 0.023 3.977 22 C -0.619 4.619 23 H 0.047 0.953 24 C -0.041 4.041 25 N -0.939 5.939 26 Si 1.115 2.885 27 H -0.285 1.285 28 H -0.273 1.273 29 H -0.266 1.266 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.419 0.581 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.414 0.586 43 H 0.347 0.653 44 H 0.345 0.655 45 H 0.070 0.930 46 H 0.040 0.960 47 H 0.000 1.000 48 H -0.009 1.009 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.517 2.104 -18.465 33.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.706 3.294 3 O -0.999 6.999 4 O -0.990 6.990 5 N -0.877 5.877 6 C 0.040 3.960 7 H 0.130 0.870 8 C -0.183 4.183 9 C -0.156 4.156 10 C -0.163 4.163 11 C -0.123 4.123 12 H 0.118 0.882 13 C -0.003 4.003 14 N -0.364 5.364 15 C 0.271 3.729 16 O -0.464 6.464 17 C -0.032 4.032 18 H 0.128 0.872 19 N -0.350 5.350 20 C -0.111 4.111 21 C -0.014 4.014 22 C -0.657 4.657 23 H 0.066 0.934 24 C -0.238 4.238 25 N -0.577 5.577 26 Si 0.937 3.063 27 H -0.211 1.211 28 H -0.199 1.199 29 H -0.191 1.191 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.256 0.744 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.251 0.749 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.018 0.982 48 H 0.009 0.991 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -26.079 2.037 -17.579 31.517 hybrid contribution -0.804 1.078 -1.572 2.069 sum -26.883 3.115 -19.151 33.154 Atomic orbital electron populations 1.30347 1.22134 1.14091 1.13560 1.04582 0.79769 0.72248 0.72849 1.93575 1.80309 1.39812 1.86233 1.93568 1.79392 1.62438 1.63632 1.55725 1.74491 1.21636 1.35894 1.21716 0.94325 0.80756 0.99180 0.87022 1.23083 0.96553 1.00519 0.98176 1.22429 0.94800 0.99310 0.99105 1.22508 0.96602 1.01910 0.95268 1.22236 0.94224 0.98262 0.97578 0.88197 1.21501 0.86986 0.96528 0.95247 1.46026 1.18305 1.15920 1.56178 1.22311 0.84769 0.86685 0.79161 1.90651 1.80969 1.18428 1.56308 1.21655 0.86798 0.98858 0.95899 0.87159 1.58995 1.30353 1.18963 1.26646 1.21243 0.99297 0.99840 0.90730 1.18992 0.94687 0.93720 0.93972 1.22532 1.09378 1.38987 0.94811 0.93440 1.27362 0.93257 0.92839 1.10321 1.70899 1.24874 1.43924 1.17964 0.82964 0.76210 0.77312 0.69839 1.21076 1.19891 1.19060 0.83059 0.83724 0.82717 0.74434 0.88316 0.89947 0.89931 0.90713 0.90662 0.92213 0.91941 0.92573 0.74932 0.84001 0.84169 0.91180 0.94113 0.98156 0.99055 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.46 10.88 113.37 1.23 -0.23 16 2 S 2.61 35.60 6.08 -56.49 -0.34 35.26 16 3 O -1.01 -23.68 18.08 -127.65 -2.31 -25.99 16 4 O -1.00 -21.25 17.42 -127.65 -2.22 -23.47 16 5 N -1.12 -13.16 4.47 -166.22 -0.74 -13.91 16 6 C 0.15 1.29 3.46 45.75 0.16 1.44 16 7 H 0.11 0.76 7.52 -2.39 -0.02 0.75 16 8 C -0.14 -0.63 6.48 31.70 0.21 -0.42 16 9 C -0.12 -0.75 6.91 31.88 0.22 -0.53 16 10 C -0.13 -1.34 6.05 31.67 0.19 -1.15 16 11 C -0.10 -1.22 2.97 -10.07 -0.03 -1.25 16 12 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 13 C 0.12 2.35 3.66 86.38 0.32 2.67 16 14 N -0.71 -16.00 5.39 -463.07 -2.50 -18.50 16 15 C 0.49 14.88 7.07 87.66 0.62 15.50 16 16 O -0.58 -21.67 16.25 -3.02 -0.05 -21.72 16 17 C 0.08 2.76 3.15 44.17 0.14 2.89 16 18 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 19 N -0.82 -28.14 8.44 -171.80 -1.45 -29.59 16 20 C -0.07 -2.91 4.78 30.59 0.15 -2.76 16 21 C 0.02 1.21 4.17 29.85 0.12 1.33 16 22 C -0.62 -35.32 9.11 25.60 0.23 -35.09 16 23 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 24 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 25 N -0.94 -58.84 13.65 21.45 0.29 -58.55 16 26 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 27 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 29 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 30 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.15 -0.36 7.59 -2.39 -0.02 -0.38 16 33 H 0.42 5.68 6.47 -96.74 -0.63 5.05 16 34 H 0.10 -0.05 7.64 -2.39 -0.02 -0.07 16 35 H 0.08 0.36 8.06 -2.39 -0.02 0.34 16 36 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 0.83 7.77 -2.39 -0.02 0.82 16 40 H 0.06 1.28 7.02 -2.39 -0.02 1.27 16 41 H 0.06 1.29 7.57 -2.38 -0.02 1.27 16 42 H 0.41 7.44 8.33 -92.71 -0.77 6.66 16 43 H 0.35 10.34 9.06 -89.69 -0.81 9.52 16 44 H 0.34 12.24 8.58 -89.70 -0.77 11.47 16 45 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.00 0.00 7.62 -2.39 -0.02 -0.01 16 48 H -0.01 -0.47 8.01 -2.38 -0.02 -0.49 16 49 H 0.26 16.31 7.22 -92.71 -0.67 15.64 16 Total: -1.00 -87.19 404.62 -5.14 -92.33 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -1.89 Total: 31.17 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 4.02 Total: -19.48 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -4.40 Total: -120.55 kcal Atomic # 8 Polarization: -66.59 SS G_CDS: -4.58 Total: -71.17 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Atomic # 16 Polarization: 35.60 SS G_CDS: -0.34 Total: 35.26 kcal Total: -87.19 -5.14 -92.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.082 kcal (2) G-P(sol) polarization free energy of solvation -87.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds