Wall clock time and date at job start Wed Apr 1 2020 04:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42104 * 110.54004 * 2 1 4 4 O 1.42096 * 110.54600 * 223.24451 * 2 1 3 5 5 N 1.65602 * 104.44694 * 111.61885 * 2 1 3 6 6 C 1.46504 * 119.99793 * 65.00595 * 5 2 1 7 7 H 1.08997 * 110.53931 * 26.15434 * 6 5 2 8 8 C 1.54270 * 110.48451 * 263.54364 * 6 5 2 9 9 C 1.53869 * 106.63967 * 217.73604 * 8 6 5 10 10 C 1.54268 * 106.60115 * 359.97438 * 9 8 6 11 11 C 1.54895 * 104.19476 * 23.60777 * 10 9 8 12 12 H 1.09001 * 110.75082 * 80.37254 * 11 10 9 13 13 C 1.53000 * 110.75739 * 203.74412 * 11 10 9 14 14 N 1.46495 * 109.46909 * 293.54897 * 13 11 10 15 15 C 1.34785 * 119.99783 * 179.97438 * 14 13 11 16 16 O 1.21281 * 119.99831 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00039 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46910 * 320.00142 * 17 15 14 19 19 N 1.46896 * 109.46896 * 200.00229 * 17 15 14 20 20 C 1.52996 * 109.46866 * 80.00093 * 17 15 14 21 21 C 1.53005 * 109.46734 * 184.99826 * 20 17 15 22 22 C 1.50700 * 109.46719 * 179.97438 * 21 20 17 23 23 H 1.08002 * 120.00724 * 0.02562 * 22 21 20 24 24 C 1.37882 * 119.99549 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99732 * 179.97438 * 24 22 21 26 26 Si 1.86792 * 120.00206 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47158 * 90.00152 * 26 24 22 28 28 H 1.48500 * 109.47281 * 209.99751 * 26 24 22 29 29 H 1.48496 * 109.47179 * 329.99967 * 26 24 22 30 30 H 1.08996 * 109.47155 * 308.37748 * 1 2 3 31 31 H 1.09003 * 109.46820 * 68.37833 * 1 2 3 32 32 H 1.09000 * 109.46548 * 188.37365 * 1 2 3 33 33 H 0.97000 * 120.00406 * 244.99833 * 5 2 1 34 34 H 1.09002 * 110.03399 * 98.42602 * 8 6 5 35 35 H 1.08995 * 110.02943 * 337.04502 * 8 6 5 36 36 H 1.08999 * 110.03405 * 119.26051 * 9 8 6 37 37 H 1.08996 * 110.03529 * 240.68999 * 9 8 6 38 38 H 1.08997 * 110.48788 * 142.28685 * 10 9 8 39 39 H 1.09001 * 110.48482 * 264.93365 * 10 9 8 40 40 H 1.09001 * 109.47000 * 53.54501 * 13 11 10 41 41 H 1.09001 * 109.47066 * 173.54524 * 13 11 10 42 42 H 0.97001 * 120.00680 * 359.97438 * 14 13 11 43 43 H 1.00905 * 110.99680 * 176.04878 * 19 17 15 44 44 H 1.00900 * 111.00036 * 299.99818 * 19 17 15 45 45 H 1.09000 * 109.47203 * 304.99687 * 20 17 15 46 46 H 1.08994 * 109.47437 * 65.00420 * 20 17 15 47 47 H 1.08993 * 109.47510 * 299.99728 * 21 20 17 48 48 H 1.09003 * 109.47176 * 60.00383 * 21 20 17 49 49 H 0.97000 * 120.00310 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3128 -0.9692 -0.9116 5 7 2.2272 -0.5908 1.4908 6 6 1.8908 -1.9705 1.8509 7 1 1.8125 -2.5905 0.9579 8 6 0.5748 -2.0131 2.6549 9 6 0.7509 -3.0986 3.7310 10 6 2.1679 -3.6792 3.5438 11 6 2.9482 -2.5516 2.8233 12 1 3.2759 -1.7935 3.5345 13 6 4.1387 -3.1239 2.0513 14 7 5.1170 -3.6685 2.9960 15 6 6.2546 -4.2291 2.5397 16 8 6.4685 -4.2823 1.3470 17 6 7.2614 -4.7888 3.5114 18 1 7.3409 -4.1267 4.3737 19 7 8.5704 -4.8952 2.8533 20 6 6.8083 -6.1753 3.9731 21 6 7.7630 -6.6907 5.0519 22 6 7.3164 -8.0562 5.5071 23 1 6.4396 -8.5111 5.0703 24 6 8.0272 -8.7247 6.4812 25 7 7.6372 -9.9161 6.8788 26 14 9.5441 -7.9384 7.2361 27 1 9.1484 -7.1393 8.4236 28 1 10.4981 -8.9989 7.6487 29 1 10.1916 -7.0517 6.2363 30 1 -0.3633 0.6380 0.8056 31 1 -0.3633 0.3787 -0.9554 32 1 -0.3632 -1.0167 0.1497 33 1 2.6920 -0.0235 2.1257 34 1 -0.2560 -2.2700 1.9978 35 1 0.3934 -1.0468 3.1254 36 1 0.6557 -2.6591 4.7239 37 1 0.0056 -3.8824 3.5963 38 1 2.6209 -3.8990 4.5105 39 1 2.1341 -4.5755 2.9245 40 1 3.7940 -3.9170 1.3877 41 1 4.6035 -2.3334 1.4620 42 1 4.9462 -3.6256 3.9498 43 1 9.2771 -5.2073 3.5024 44 1 8.5228 -5.5041 2.0502 45 1 5.7997 -6.1107 4.3812 46 1 6.8142 -6.8604 3.1254 47 1 8.7716 -6.7553 4.6438 48 1 7.7572 -6.0056 5.8997 49 1 8.1374 -10.3867 7.5638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424139914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:08 Heat of formation + Delta-G solvation = -165.876683 kcal Electronic energy + Delta-G solvation = -28931.524654 eV Core-core repulsion = 24825.095778 eV Total energy + Delta-G solvation = -4106.428876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04425 -39.76179 -38.13424 -37.15749 -37.00855 -35.79148 -34.79752 -34.32929 -32.06854 -31.17421 -30.21974 -28.45153 -28.12879 -26.13010 -24.45046 -22.22934 -21.72849 -21.33240 -20.92435 -20.29846 -19.14269 -18.61013 -18.28333 -17.76681 -17.14102 -17.10442 -16.38116 -16.35127 -16.14231 -16.04021 -15.65242 -15.33936 -15.10346 -14.66911 -14.62288 -14.43445 -14.30222 -14.09748 -13.92015 -13.80905 -13.54949 -13.42572 -13.22111 -13.09856 -13.07130 -13.01212 -12.68969 -12.31279 -12.09824 -12.05429 -11.91511 -11.85110 -11.80041 -11.68235 -11.67298 -11.39559 -11.22310 -10.80148 -10.76175 -10.33546 -10.09097 -9.64880 -8.28892 -6.34093 -0.66103 1.38488 1.41296 1.52064 1.63128 1.77983 2.14688 2.37000 2.91064 3.06698 3.26941 3.47129 3.56129 3.73234 3.78693 3.84594 4.05584 4.10970 4.18770 4.20440 4.31924 4.33793 4.36583 4.47962 4.57532 4.60162 4.63415 4.73553 4.79897 4.82553 4.91177 4.96220 4.97399 5.13252 5.26478 5.34159 5.37568 5.43647 5.47628 5.49293 5.56153 5.63788 6.06918 6.14346 6.26322 6.48344 6.56796 6.74366 7.26909 7.30564 8.87749 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018975 B = 0.002110 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.245034 B =13269.688448 C =14214.750951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.610 3.390 3 O -1.003 7.003 4 O -1.006 7.006 5 N -1.106 6.106 6 C 0.144 3.856 7 H 0.095 0.905 8 C -0.141 4.141 9 C -0.118 4.118 10 C -0.125 4.125 11 C -0.097 4.097 12 H 0.110 0.890 13 C 0.126 3.874 14 N -0.714 5.714 15 C 0.520 3.480 16 O -0.577 6.577 17 C 0.081 3.919 18 H 0.122 0.878 19 N -0.833 5.833 20 C -0.117 4.117 21 C -0.006 4.006 22 C -0.533 4.533 23 H 0.027 0.973 24 C 0.001 3.999 25 N -0.952 5.952 26 Si 0.954 3.046 27 H -0.264 1.264 28 H -0.291 1.291 29 H -0.240 1.240 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.425 0.575 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.415 0.585 43 H 0.354 0.646 44 H 0.344 0.656 45 H 0.068 0.932 46 H 0.039 0.961 47 H 0.023 0.977 48 H 0.032 0.968 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.969 23.742 -6.449 31.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.707 3.293 3 O -0.993 6.993 4 O -0.996 6.996 5 N -0.866 5.866 6 C 0.036 3.964 7 H 0.113 0.887 8 C -0.180 4.180 9 C -0.156 4.156 10 C -0.163 4.163 11 C -0.117 4.117 12 H 0.128 0.872 13 C 0.002 3.998 14 N -0.367 5.367 15 C 0.307 3.693 16 O -0.456 6.456 17 C -0.034 4.034 18 H 0.140 0.860 19 N -0.364 5.364 20 C -0.157 4.157 21 C -0.044 4.044 22 C -0.571 4.571 23 H 0.045 0.955 24 C -0.195 4.195 25 N -0.593 5.593 26 Si 0.777 3.223 27 H -0.188 1.188 28 H -0.217 1.217 29 H -0.163 1.163 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.261 0.739 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.041 0.959 48 H 0.050 0.950 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.314 24.542 -8.154 32.277 hybrid contribution 0.218 -1.497 1.410 2.068 sum -19.096 23.045 -6.744 30.679 Atomic orbital electron populations 1.30370 1.22513 1.13824 1.13646 1.04525 0.79628 0.72257 0.72933 1.93569 1.80163 1.39384 1.86225 1.93589 1.79352 1.62697 1.63987 1.55368 1.74435 1.20936 1.35827 1.21801 0.94840 0.81129 0.98658 0.88688 1.22778 0.96068 1.01110 0.98083 1.22051 0.95902 0.98136 0.99550 1.22452 0.96024 0.97002 1.00843 1.22584 0.92883 0.98868 0.97373 0.87184 1.21365 0.88998 0.97516 0.91935 1.45823 1.19193 1.60335 1.11366 1.20852 0.82641 0.76772 0.89072 1.90648 1.77836 1.58503 1.18576 1.21458 0.89345 0.96890 0.95736 0.86048 1.58751 1.05432 1.59831 1.12411 1.22009 1.00719 0.94437 0.98527 1.19509 0.95615 0.94422 0.94851 1.21432 1.12062 1.02558 1.21006 0.95464 1.26079 1.01276 0.95168 0.97002 1.70080 1.42223 1.15219 1.31776 0.85610 0.78588 0.78512 0.79636 1.18838 1.21712 1.16297 0.82580 0.83885 0.83333 0.73855 0.89341 0.88707 0.90504 0.91087 0.90481 0.92028 0.92887 0.92962 0.74804 0.83049 0.84300 0.91357 0.94229 0.95860 0.94991 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.43 10.79 113.37 1.22 -0.21 16 2 S 2.61 33.72 6.09 -56.49 -0.34 33.37 16 3 O -1.00 -20.85 18.08 -127.65 -2.31 -23.15 16 4 O -1.01 -23.20 17.43 -127.65 -2.22 -25.42 16 5 N -1.11 -10.29 5.42 -164.81 -0.89 -11.18 16 6 C 0.14 1.37 2.87 46.09 0.13 1.50 16 7 H 0.10 1.11 7.47 -2.39 -0.02 1.09 16 8 C -0.14 -0.59 6.31 31.32 0.20 -0.39 16 9 C -0.12 -0.80 6.80 31.32 0.21 -0.59 16 10 C -0.12 -1.39 5.97 31.67 0.19 -1.20 16 11 C -0.10 -1.15 2.59 -9.48 -0.02 -1.17 16 12 H 0.11 0.95 8.05 -2.39 -0.02 0.93 16 13 C 0.13 2.65 5.11 86.38 0.44 3.09 16 14 N -0.71 -16.20 5.40 -463.06 -2.50 -18.70 16 15 C 0.52 16.31 7.08 87.66 0.62 16.93 16 16 O -0.58 -22.92 16.25 -3.03 -0.05 -22.97 16 17 C 0.08 2.44 3.21 44.17 0.14 2.58 16 18 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 19 N -0.83 -26.15 8.94 -171.81 -1.54 -27.69 16 20 C -0.12 -4.23 4.78 30.59 0.15 -4.08 16 21 C -0.01 -0.28 3.81 29.85 0.11 -0.16 16 22 C -0.53 -29.52 9.66 25.60 0.25 -29.27 16 23 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 24 C 0.00 0.08 5.47 84.66 0.46 0.54 16 25 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 26 Si 0.95 42.23 27.47 68.60 1.88 44.11 16 27 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 28 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 29 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 30 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.14 0.06 8.14 -2.39 -0.02 0.05 16 32 H 0.15 -0.14 7.42 -2.39 -0.02 -0.16 16 33 H 0.43 2.92 8.73 -96.74 -0.84 2.07 16 34 H 0.09 0.10 7.55 -2.39 -0.02 0.08 16 35 H 0.09 0.11 8.04 -2.39 -0.02 0.09 16 36 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.88 8.01 -2.39 -0.02 0.86 16 40 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.42 6.97 8.33 -92.71 -0.77 6.20 16 43 H 0.35 10.44 7.55 -89.69 -0.68 9.77 16 44 H 0.34 11.47 8.58 -89.69 -0.77 10.70 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.02 0.96 5.93 -2.39 -0.01 0.95 16 48 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 49 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -87.43 405.12 -5.70 -93.13 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -2.13 Total: 29.37 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 4.10 Total: -12.43 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -4.63 Total: -116.01 kcal Atomic # 8 Polarization: -66.97 SS G_CDS: -4.58 Total: -71.55 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Atomic # 16 Polarization: 33.72 SS G_CDS: -0.34 Total: 33.37 kcal Total: -87.43 -5.70 -93.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.745 kcal (2) G-P(sol) polarization free energy of solvation -87.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds