Wall clock time and date at job start Wed Apr 1 2020 04:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.53866 * 2 1 4 4 O 1.42095 * 110.54667 * 223.25148 * 2 1 3 5 5 N 1.65601 * 104.45187 * 111.62121 * 2 1 3 6 6 C 1.46501 * 119.99418 * 65.00163 * 5 2 1 7 7 H 1.09000 * 110.82016 * 21.66460 * 6 5 2 8 8 C 1.54891 * 110.75877 * 258.32720 * 6 5 2 9 9 C 1.54261 * 104.20023 * 203.74662 * 8 6 5 10 10 C 1.53883 * 106.59515 * 23.61027 * 9 8 6 11 11 C 1.54256 * 106.60079 * 0.02562 * 10 9 8 12 12 H 1.09007 * 110.48684 * 95.19907 * 11 10 9 13 13 C 1.53002 * 110.49048 * 217.71026 * 11 10 9 14 14 N 1.46496 * 109.47131 * 293.54724 * 13 11 10 15 15 C 1.34772 * 119.99985 * 179.97438 * 14 13 11 16 16 O 1.21276 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99926 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46710 * 40.00386 * 17 15 14 19 19 N 1.46898 * 109.47045 * 160.00562 * 17 15 14 20 20 C 1.52996 * 109.47058 * 280.00535 * 17 15 14 21 21 C 1.52998 * 109.46929 * 175.00132 * 20 17 15 22 22 C 1.50706 * 109.47348 * 179.97438 * 21 20 17 23 23 H 1.08005 * 119.99758 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00102 * 179.97438 * 22 21 20 25 25 N 1.31516 * 120.00217 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99766 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00068 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00417 * 26 24 22 30 30 H 1.08993 * 109.47371 * 308.37468 * 1 2 3 31 31 H 1.08997 * 109.46907 * 68.37985 * 1 2 3 32 32 H 1.08999 * 109.46596 * 188.37505 * 1 2 3 33 33 H 0.96995 * 120.00520 * 245.00540 * 5 2 1 34 34 H 1.08996 * 110.48348 * 85.06543 * 8 6 5 35 35 H 1.09002 * 110.59730 * 322.48345 * 8 6 5 36 36 H 1.08996 * 110.03373 * 264.32956 * 9 8 6 37 37 H 1.08999 * 110.03688 * 142.89195 * 9 8 6 38 38 H 1.09001 * 110.03151 * 240.71256 * 10 9 8 39 39 H 1.08997 * 110.02876 * 119.28762 * 10 9 8 40 40 H 1.08993 * 109.47314 * 173.54325 * 13 11 10 41 41 H 1.09004 * 109.46454 * 53.54302 * 13 11 10 42 42 H 0.96998 * 119.99812 * 0.02562 * 14 13 11 43 43 H 1.00898 * 110.99837 * 59.99839 * 19 17 15 44 44 H 1.00894 * 110.99865 * 183.95452 * 19 17 15 45 45 H 1.09000 * 109.47441 * 55.00222 * 20 17 15 46 46 H 1.09002 * 109.47087 * 294.99668 * 20 17 15 47 47 H 1.09001 * 109.47671 * 60.00109 * 21 20 17 48 48 H 1.09006 * 109.47297 * 299.99829 * 21 20 17 49 49 H 0.97001 * 119.99646 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 1.8909 -1.9705 1.8508 7 1 1.7336 -2.5764 0.9584 8 6 0.6432 -2.0100 2.7678 9 6 0.7752 -3.3451 3.5291 10 6 2.2694 -3.7129 3.5156 11 6 2.9932 -2.5881 2.7472 12 1 3.3861 -1.8442 3.4403 13 6 4.1199 -3.1656 1.8881 14 7 5.1625 -3.7174 2.7568 15 6 6.2598 -4.2835 2.2167 16 8 6.3844 -4.3357 1.0114 17 6 7.3326 -4.8507 3.1103 18 1 6.8696 -5.3626 3.9539 19 7 8.1512 -5.8034 2.3487 20 6 8.2190 -3.7156 3.6267 21 6 9.2295 -4.2740 4.6306 22 6 10.1031 -3.1561 5.1389 23 1 9.9528 -2.1481 4.7812 24 6 11.0940 -3.4200 6.0604 25 7 11.2773 -4.6475 6.4956 26 14 12.1772 -2.0344 6.6897 27 1 13.1571 -2.5762 7.6652 28 1 12.9021 -1.4162 5.5506 29 1 11.3332 -1.0091 7.3544 30 1 -0.3634 0.6379 0.8056 31 1 -0.3633 0.3786 -0.9553 32 1 -0.3632 -1.0167 0.1497 33 1 2.6920 -0.0236 2.1256 34 1 -0.2690 -1.9995 2.1714 35 1 0.6524 -1.1713 3.4640 36 1 0.1955 -4.1199 3.0275 37 1 0.4295 -3.2253 4.5559 38 1 2.4147 -4.6662 3.0075 39 1 2.6486 -3.7715 4.5358 40 1 4.5443 -2.3767 1.2673 41 1 3.7224 -3.9554 1.2507 42 1 5.0627 -3.6760 3.7208 43 1 8.5915 -5.3527 1.5606 44 1 8.8371 -6.2458 2.9419 45 1 7.5990 -2.9639 4.1152 46 1 8.7507 -3.2608 2.7909 47 1 9.8496 -5.0257 4.1422 48 1 8.6979 -4.7289 5.4665 49 1 10.7151 -5.3671 6.1684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424139915.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:12 Heat of formation + Delta-G solvation = -139.576461 kcal Electronic energy + Delta-G solvation = -28952.798608 eV Core-core repulsion = 24847.510195 eV Total energy + Delta-G solvation = -4105.288413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.00361 -39.02507 -37.45408 -36.32510 -35.70616 -34.76586 -33.85830 -33.09602 -30.46303 -29.89632 -29.70554 -27.79018 -26.55203 -24.61269 -23.19536 -21.44208 -20.98461 -20.60945 -19.86376 -19.74757 -18.08866 -17.54143 -17.16522 -16.61185 -16.49104 -16.13314 -15.72924 -15.29525 -15.09677 -14.52499 -14.21231 -14.18897 -14.01821 -13.86106 -13.74015 -13.65959 -13.44058 -13.32861 -13.01420 -12.79324 -12.48725 -12.42500 -12.36858 -12.29694 -11.82803 -11.64891 -11.64013 -11.46296 -11.36324 -11.25770 -11.17904 -10.85524 -10.84376 -10.28909 -10.13391 -10.09808 -9.93006 -9.38069 -8.98207 -8.71186 -8.40605 -8.23912 -6.43201 -4.13565 -0.17649 2.25047 2.92897 3.19642 3.39016 3.40351 3.42042 3.60764 3.72725 3.97770 4.05051 4.21697 4.28592 4.45198 4.49141 4.64747 4.80288 4.88046 4.92241 4.97862 5.05074 5.09988 5.11693 5.15681 5.18646 5.33352 5.37396 5.48687 5.51367 5.62795 5.66252 5.68909 5.78848 5.89192 5.96593 6.16889 6.38739 6.49286 6.52950 6.72225 7.21760 7.33511 7.38597 7.66536 7.81570 8.11585 8.37822 8.46043 8.80557 9.58325 10.97135 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.002198 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.373287 B =12734.127590 C =13232.329235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.610 3.390 3 O -0.958 6.958 4 O -0.951 6.951 5 N -1.110 6.110 6 C 0.147 3.853 7 H 0.106 0.894 8 C -0.144 4.144 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.105 4.105 12 H 0.092 0.908 13 C 0.126 3.874 14 N -0.734 5.734 15 C 0.524 3.476 16 O -0.535 6.535 17 C 0.074 3.926 18 H 0.095 0.905 19 N -0.830 5.830 20 C -0.130 4.130 21 C 0.011 3.989 22 C -0.604 4.604 23 H 0.048 0.952 24 C 0.016 3.984 25 N -0.910 5.910 26 Si 1.068 2.932 27 H -0.282 1.282 28 H -0.288 1.288 29 H -0.288 1.288 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.420 0.580 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.400 0.600 43 H 0.347 0.653 44 H 0.351 0.649 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.009 0.991 48 H 0.009 0.991 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.873 6.008 -7.158 30.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.701 3.299 3 O -0.948 6.948 4 O -0.940 6.940 5 N -0.868 5.868 6 C 0.039 3.961 7 H 0.124 0.876 8 C -0.183 4.183 9 C -0.160 4.160 10 C -0.161 4.161 11 C -0.126 4.126 12 H 0.110 0.890 13 C 0.002 3.998 14 N -0.387 5.387 15 C 0.310 3.690 16 O -0.410 6.410 17 C -0.042 4.042 18 H 0.113 0.887 19 N -0.362 5.362 20 C -0.170 4.170 21 C -0.026 4.026 22 C -0.642 4.642 23 H 0.066 0.934 24 C -0.188 4.188 25 N -0.546 5.546 26 Si 0.896 3.104 27 H -0.207 1.207 28 H -0.214 1.214 29 H -0.214 1.214 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.255 0.745 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.234 0.766 43 H 0.160 0.840 44 H 0.166 0.834 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.027 0.973 48 H 0.027 0.973 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -27.702 6.068 -8.000 29.466 hybrid contribution -1.096 0.533 0.358 1.271 sum -28.798 6.601 -7.642 30.517 Atomic orbital electron populations 1.30595 1.28612 1.11579 1.11613 1.04892 0.77565 0.73993 0.73442 1.93636 1.77851 1.37684 1.85654 1.93658 1.76701 1.61675 1.62001 1.55592 1.73737 1.20864 1.36640 1.21858 0.94202 0.81383 0.98680 0.87594 1.22924 0.97424 0.98971 0.99003 1.22063 0.96566 0.96614 1.00771 1.22228 0.94622 0.98344 1.00951 1.22477 0.94643 0.98255 0.97224 0.88979 1.21338 0.87324 0.98456 0.92639 1.45948 1.20707 1.61838 1.10244 1.20820 0.82125 0.76829 0.89189 1.90656 1.78277 1.56747 1.15347 1.21486 0.93497 0.94452 0.94725 0.88734 1.58736 1.30715 1.33745 1.12990 1.22239 0.97984 0.96569 1.00175 1.19227 0.93396 0.96877 0.93076 1.22004 1.19138 0.94938 1.28140 0.93371 1.25858 0.97384 1.01121 0.94461 1.70804 1.40226 1.00346 1.43239 0.83547 0.76082 0.74326 0.76401 1.20704 1.21413 1.21441 0.85203 0.85334 0.85400 0.74462 0.91153 0.90315 0.91351 0.91249 0.90743 0.90900 0.91222 0.91261 0.76565 0.83989 0.83378 0.92413 0.92516 0.97319 0.97286 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.98 10.89 101.05 1.10 -0.88 16 2 S 2.61 18.61 6.08 -107.50 -0.65 17.96 16 3 O -0.96 -10.51 18.08 -57.54 -1.04 -11.55 16 4 O -0.95 -10.84 17.45 -57.54 -1.00 -11.84 16 5 N -1.11 -6.37 5.48 -3.18 -0.02 -6.38 16 6 C 0.15 0.83 2.88 -65.92 -0.19 0.64 16 7 H 0.11 0.61 7.50 -51.93 -0.39 0.23 16 8 C -0.14 -0.52 6.51 -25.07 -0.16 -0.69 16 9 C -0.12 -0.52 6.80 -25.61 -0.17 -0.70 16 10 C -0.12 -0.72 6.05 -25.61 -0.15 -0.87 16 11 C -0.11 -0.73 2.59 -88.95 -0.23 -0.96 16 12 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 13 C 0.13 1.38 4.99 -4.04 -0.02 1.36 16 14 N -0.73 -9.10 5.39 -60.30 -0.33 -9.43 16 15 C 0.52 8.75 7.08 -10.98 -0.08 8.67 16 16 O -0.53 -10.82 16.25 5.56 0.09 -10.73 16 17 C 0.07 1.25 3.21 -68.86 -0.22 1.03 16 18 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 19 N -0.83 -14.46 8.94 -5.65 -0.05 -14.51 16 20 C -0.13 -2.58 4.78 -26.73 -0.13 -2.70 16 21 C 0.01 0.27 4.05 -27.88 -0.11 0.16 16 22 C -0.60 -16.83 9.11 -34.44 -0.31 -17.15 16 23 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 24 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 25 N -0.91 -27.28 13.65 55.43 0.76 -26.52 16 26 Si 1.07 25.03 29.90 -169.99 -5.08 19.95 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.13 0.20 7.58 -51.92 -0.39 -0.19 16 33 H 0.42 2.02 8.79 -34.47 -0.30 1.72 16 34 H 0.07 0.15 7.58 -51.93 -0.39 -0.24 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.50 7.77 -51.93 -0.40 0.09 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 42 H 0.40 4.05 8.32 -40.82 -0.34 3.71 16 43 H 0.35 6.22 8.58 -39.29 -0.34 5.88 16 44 H 0.35 6.04 7.55 -39.29 -0.30 5.74 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.01 0.22 6.74 -51.93 -0.35 -0.13 16 48 H 0.01 0.22 8.01 -51.93 -0.42 -0.19 16 49 H 0.27 7.93 7.22 -40.82 -0.29 7.64 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -38.92 407.84 -10.15 -49.07 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.18 Total: 9.57 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.78 Total: -11.74 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.36 Total: -56.84 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.95 Total: -34.11 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Atomic # 16 Polarization: 18.61 SS G_CDS: -0.65 Total: 17.96 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.92 -10.15 -49.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139915.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.510 kcal (2) G-P(sol) polarization free energy of solvation -38.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds