Wall clock time and date at job start Wed Apr 1 2020 04:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.53866 * 2 1 4 4 O 1.42095 * 110.54667 * 223.25148 * 2 1 3 5 5 N 1.65601 * 104.45187 * 111.62121 * 2 1 3 6 6 C 1.46501 * 119.99418 * 65.00163 * 5 2 1 7 7 H 1.09000 * 110.82016 * 21.66460 * 6 5 2 8 8 C 1.54891 * 110.75877 * 258.32720 * 6 5 2 9 9 C 1.54261 * 104.20023 * 203.74662 * 8 6 5 10 10 C 1.53883 * 106.59515 * 23.61027 * 9 8 6 11 11 C 1.54256 * 106.60079 * 0.02562 * 10 9 8 12 12 H 1.09007 * 110.48684 * 95.19907 * 11 10 9 13 13 C 1.53002 * 110.49048 * 217.71026 * 11 10 9 14 14 N 1.46496 * 109.47131 * 293.54724 * 13 11 10 15 15 C 1.34772 * 119.99985 * 179.97438 * 14 13 11 16 16 O 1.21276 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99926 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46710 * 40.00386 * 17 15 14 19 19 N 1.46898 * 109.47045 * 160.00562 * 17 15 14 20 20 C 1.52996 * 109.47058 * 280.00535 * 17 15 14 21 21 C 1.52998 * 109.46929 * 175.00132 * 20 17 15 22 22 C 1.50706 * 109.47348 * 179.97438 * 21 20 17 23 23 H 1.08005 * 119.99758 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00102 * 179.97438 * 22 21 20 25 25 N 1.31516 * 120.00217 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99766 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00068 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00417 * 26 24 22 30 30 H 1.08993 * 109.47371 * 308.37468 * 1 2 3 31 31 H 1.08997 * 109.46907 * 68.37985 * 1 2 3 32 32 H 1.08999 * 109.46596 * 188.37505 * 1 2 3 33 33 H 0.96995 * 120.00520 * 245.00540 * 5 2 1 34 34 H 1.08996 * 110.48348 * 85.06543 * 8 6 5 35 35 H 1.09002 * 110.59730 * 322.48345 * 8 6 5 36 36 H 1.08996 * 110.03373 * 264.32956 * 9 8 6 37 37 H 1.08999 * 110.03688 * 142.89195 * 9 8 6 38 38 H 1.09001 * 110.03151 * 240.71256 * 10 9 8 39 39 H 1.08997 * 110.02876 * 119.28762 * 10 9 8 40 40 H 1.08993 * 109.47314 * 173.54325 * 13 11 10 41 41 H 1.09004 * 109.46454 * 53.54302 * 13 11 10 42 42 H 0.96998 * 119.99812 * 0.02562 * 14 13 11 43 43 H 1.00898 * 110.99837 * 59.99839 * 19 17 15 44 44 H 1.00894 * 110.99865 * 183.95452 * 19 17 15 45 45 H 1.09000 * 109.47441 * 55.00222 * 20 17 15 46 46 H 1.09002 * 109.47087 * 294.99668 * 20 17 15 47 47 H 1.09001 * 109.47671 * 60.00109 * 21 20 17 48 48 H 1.09006 * 109.47297 * 299.99829 * 21 20 17 49 49 H 0.97001 * 119.99646 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 1.8909 -1.9705 1.8508 7 1 1.7336 -2.5764 0.9584 8 6 0.6432 -2.0100 2.7678 9 6 0.7752 -3.3451 3.5291 10 6 2.2694 -3.7129 3.5156 11 6 2.9932 -2.5881 2.7472 12 1 3.3861 -1.8442 3.4403 13 6 4.1199 -3.1656 1.8881 14 7 5.1625 -3.7174 2.7568 15 6 6.2598 -4.2835 2.2167 16 8 6.3844 -4.3357 1.0114 17 6 7.3326 -4.8507 3.1103 18 1 6.8696 -5.3626 3.9539 19 7 8.1512 -5.8034 2.3487 20 6 8.2190 -3.7156 3.6267 21 6 9.2295 -4.2740 4.6306 22 6 10.1031 -3.1561 5.1389 23 1 9.9528 -2.1481 4.7812 24 6 11.0940 -3.4200 6.0604 25 7 11.2773 -4.6475 6.4956 26 14 12.1772 -2.0344 6.6897 27 1 13.1571 -2.5762 7.6652 28 1 12.9021 -1.4162 5.5506 29 1 11.3332 -1.0091 7.3544 30 1 -0.3634 0.6379 0.8056 31 1 -0.3633 0.3786 -0.9553 32 1 -0.3632 -1.0167 0.1497 33 1 2.6920 -0.0236 2.1256 34 1 -0.2690 -1.9995 2.1714 35 1 0.6524 -1.1713 3.4640 36 1 0.1955 -4.1199 3.0275 37 1 0.4295 -3.2253 4.5559 38 1 2.4147 -4.6662 3.0075 39 1 2.6486 -3.7715 4.5358 40 1 4.5443 -2.3767 1.2673 41 1 3.7224 -3.9554 1.2507 42 1 5.0627 -3.6760 3.7208 43 1 8.5915 -5.3527 1.5606 44 1 8.8371 -6.2458 2.9419 45 1 7.5990 -2.9639 4.1152 46 1 8.7507 -3.2608 2.7909 47 1 9.8496 -5.0257 4.1422 48 1 8.6979 -4.7289 5.4665 49 1 10.7151 -5.3671 6.1684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424139915.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:11 Heat of formation + Delta-G solvation = -173.101952 kcal Electronic energy + Delta-G solvation = -28954.252382 eV Core-core repulsion = 24847.510195 eV Total energy + Delta-G solvation = -4106.742187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.11895 -39.78714 -38.15315 -37.31623 -37.02443 -35.84153 -35.08798 -34.36688 -31.56088 -31.15516 -30.23834 -28.25106 -27.96979 -26.02859 -24.65907 -22.72445 -21.91368 -21.13542 -21.03138 -20.36426 -19.24228 -18.64181 -18.26021 -17.72608 -17.17335 -17.15106 -16.58763 -16.22664 -16.10936 -15.70548 -15.66213 -15.48567 -15.37799 -14.74112 -14.62090 -14.41720 -14.14733 -14.09112 -13.93426 -13.87159 -13.54709 -13.48953 -13.23350 -13.11147 -13.05389 -12.96760 -12.63074 -12.38633 -12.15100 -12.07911 -11.95117 -11.92666 -11.90630 -11.84929 -11.68933 -11.22578 -10.96840 -10.71429 -10.55595 -10.32680 -10.15385 -9.74880 -8.69008 -6.40605 -0.67918 1.51409 1.55375 1.58783 1.76160 1.78527 2.07777 2.54672 2.90267 3.14250 3.24976 3.46068 3.55555 3.64352 3.74230 3.77763 4.00376 4.04345 4.12385 4.17397 4.27771 4.30491 4.33977 4.44951 4.50028 4.55799 4.62181 4.66388 4.79933 4.80958 4.87793 4.89781 4.95221 5.12736 5.24016 5.28353 5.32706 5.38236 5.40953 5.46393 5.55131 5.96025 5.96775 6.10290 6.16534 6.36011 6.48776 6.58004 7.19108 7.39200 8.71963 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.002198 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.373287 B =12734.127590 C =13232.329235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.607 3.393 3 O -1.005 7.005 4 O -1.006 7.006 5 N -1.108 6.108 6 C 0.143 3.857 7 H 0.102 0.898 8 C -0.136 4.136 9 C -0.120 4.120 10 C -0.122 4.122 11 C -0.101 4.101 12 H 0.101 0.899 13 C 0.125 3.875 14 N -0.714 5.714 15 C 0.522 3.478 16 O -0.575 6.575 17 C 0.081 3.919 18 H 0.114 0.886 19 N -0.830 5.830 20 C -0.114 4.114 21 C 0.015 3.985 22 C -0.622 4.622 23 H 0.044 0.956 24 C -0.035 4.035 25 N -0.934 5.934 26 Si 1.113 2.887 27 H -0.283 1.283 28 H -0.275 1.275 29 H -0.268 1.268 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.424 0.576 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.414 0.586 43 H 0.343 0.657 44 H 0.351 0.649 45 H 0.067 0.933 46 H 0.040 0.960 47 H -0.002 1.002 48 H 0.002 0.998 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.737 7.042 -5.967 33.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.705 3.295 3 O -0.996 6.996 4 O -0.996 6.996 5 N -0.867 5.867 6 C 0.035 3.965 7 H 0.120 0.880 8 C -0.175 4.175 9 C -0.158 4.158 10 C -0.161 4.161 11 C -0.121 4.121 12 H 0.119 0.881 13 C 0.002 3.998 14 N -0.366 5.366 15 C 0.309 3.691 16 O -0.454 6.454 17 C -0.034 4.034 18 H 0.131 0.869 19 N -0.361 5.361 20 C -0.154 4.154 21 C -0.022 4.022 22 C -0.660 4.660 23 H 0.063 0.937 24 C -0.233 4.233 25 N -0.571 5.571 26 Si 0.935 3.065 27 H -0.208 1.208 28 H -0.200 1.200 29 H -0.193 1.193 30 H 0.174 0.826 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.260 0.740 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.251 0.749 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.016 0.984 48 H 0.020 0.980 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -30.565 7.108 -6.784 32.105 hybrid contribution -0.292 0.181 -0.027 0.344 sum -30.856 7.289 -6.811 32.429 Atomic orbital electron populations 1.30344 1.22161 1.13946 1.13657 1.04590 0.79784 0.72240 0.72913 1.93570 1.80267 1.39536 1.86216 1.93590 1.79405 1.62648 1.63916 1.55361 1.74420 1.21035 1.35849 1.21967 0.94791 0.80939 0.98825 0.88041 1.22926 0.96884 0.98938 0.98796 1.22065 0.95055 0.97131 1.01529 1.22219 0.95964 0.97203 1.00689 1.22481 0.93667 0.98880 0.97115 0.88106 1.21441 0.87880 0.97452 0.93051 1.45828 1.19667 1.59945 1.11208 1.20743 0.82966 0.76958 0.88471 1.90642 1.79309 1.58553 1.16863 1.21430 0.93221 0.93444 0.95299 0.86864 1.58753 1.30740 1.33694 1.12881 1.22013 0.97416 0.97499 0.98479 1.19130 0.93738 0.95760 0.93602 1.22442 1.19713 0.95741 1.28061 0.93722 1.27297 0.98822 1.02478 0.94716 1.70925 1.40864 1.00943 1.44412 0.82971 0.74899 0.72201 0.76436 1.20795 1.20032 1.19283 0.82619 0.83843 0.83060 0.73999 0.88815 0.89239 0.90822 0.90387 0.91817 0.90418 0.93648 0.92129 0.74920 0.84394 0.83367 0.91443 0.94161 0.98382 0.98002 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.54 10.89 113.37 1.23 -0.31 16 2 S 2.61 36.31 6.08 -56.49 -0.34 35.96 16 3 O -1.01 -22.60 18.08 -127.65 -2.31 -24.91 16 4 O -1.01 -23.95 17.45 -127.65 -2.23 -26.18 16 5 N -1.11 -11.66 5.48 -163.98 -0.90 -12.55 16 6 C 0.14 1.37 2.88 46.29 0.13 1.51 16 7 H 0.10 1.08 7.50 -2.39 -0.02 1.06 16 8 C -0.14 -0.50 6.51 31.67 0.21 -0.30 16 9 C -0.12 -0.65 6.80 31.32 0.21 -0.44 16 10 C -0.12 -1.18 6.05 31.32 0.19 -0.99 16 11 C -0.10 -1.27 2.59 -9.71 -0.03 -1.29 16 12 H 0.10 1.11 8.07 -2.38 -0.02 1.09 16 13 C 0.13 2.77 4.99 86.38 0.43 3.20 16 14 N -0.71 -17.38 5.39 -463.07 -2.50 -19.88 16 15 C 0.52 17.47 7.08 87.66 0.62 18.09 16 16 O -0.57 -23.80 16.25 -3.02 -0.05 -23.85 16 17 C 0.08 2.75 3.21 44.17 0.14 2.89 16 18 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 19 N -0.83 -29.15 8.94 -171.80 -1.54 -30.68 16 20 C -0.11 -4.52 4.78 30.59 0.15 -4.38 16 21 C 0.01 0.72 4.05 29.85 0.12 0.84 16 22 C -0.62 -34.71 9.11 25.60 0.23 -34.47 16 23 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 24 C -0.03 -1.99 5.46 84.65 0.46 -1.52 16 25 N -0.93 -56.40 13.65 21.45 0.29 -56.11 16 26 Si 1.11 49.74 29.90 68.60 2.05 51.79 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 30 H 0.16 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.14 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.15 -0.22 7.58 -2.39 -0.02 -0.24 16 33 H 0.42 3.77 8.79 -96.75 -0.85 2.92 16 34 H 0.09 -0.04 7.58 -2.39 -0.02 -0.06 16 35 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.06 0.77 7.77 -2.39 -0.02 0.75 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.46 8.05 -2.38 -0.02 1.44 16 42 H 0.41 7.80 8.32 -92.71 -0.77 7.03 16 43 H 0.34 12.59 8.58 -89.70 -0.77 11.82 16 44 H 0.35 12.24 7.55 -89.70 -0.68 11.56 16 45 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.00 -0.10 6.74 -2.39 -0.02 -0.12 16 48 H 0.00 0.09 8.01 -2.38 -0.02 0.07 16 49 H 0.26 15.58 7.22 -92.71 -0.67 14.91 16 Total: -1.00 -86.57 407.84 -5.39 -91.96 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -1.98 Total: 31.63 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 4.11 Total: -17.17 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -4.64 Total: -119.23 kcal Atomic # 8 Polarization: -70.35 SS G_CDS: -4.58 Total: -74.94 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Atomic # 16 Polarization: 36.31 SS G_CDS: -0.34 Total: 35.96 kcal Total: -86.57 -5.39 -91.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424139915.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.144 kcal (2) G-P(sol) polarization free energy of solvation -86.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds