Wall clock time and date at job start Wed Apr 1 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 110.54010 * 2 1 4 4 O 1.42097 * 110.54219 * 136.75077 * 2 1 3 5 5 N 1.65595 * 104.44875 * 248.37967 * 2 1 3 6 6 C 1.46497 * 120.00313 * 64.99696 * 5 2 1 7 7 H 1.09001 * 109.46991 * 25.00122 * 6 5 2 8 8 C 1.52994 * 109.47491 * 265.00387 * 6 5 2 9 9 C 1.53004 * 109.47639 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47113 * 59.99567 * 9 8 6 11 11 C 1.52998 * 109.47080 * 300.00353 * 10 9 8 12 12 C 1.52998 * 109.47227 * 60.00320 * 11 10 9 13 13 H 1.09001 * 109.47298 * 59.99816 * 12 11 10 14 14 N 1.46502 * 109.47438 * 179.97438 * 12 11 10 15 15 C 1.34776 * 119.99948 * 275.00383 * 14 12 11 16 16 O 1.21280 * 120.00102 * 359.97438 * 15 14 12 17 17 C 1.50695 * 120.00191 * 179.97438 * 15 14 12 18 18 H 1.09009 * 109.47187 * 39.99388 * 17 15 14 19 19 N 1.46897 * 109.47252 * 159.99472 * 17 15 14 20 20 C 1.52997 * 109.47048 * 279.99530 * 17 15 14 21 21 C 1.53005 * 109.47203 * 174.99923 * 20 17 15 22 22 C 1.50700 * 109.47278 * 180.02562 * 21 20 17 23 23 H 1.08003 * 119.99591 * 359.97438 * 22 21 20 24 24 C 1.37875 * 120.00023 * 180.02562 * 22 21 20 25 25 N 1.31512 * 120.00076 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47304 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47381 * 120.00180 * 26 24 22 29 29 H 1.48505 * 109.46939 * 239.99915 * 26 24 22 30 30 H 1.09001 * 109.47190 * 171.62010 * 1 2 3 31 31 H 1.09004 * 109.47089 * 291.62143 * 1 2 3 32 32 H 1.09004 * 109.47568 * 51.62153 * 1 2 3 33 33 H 0.97001 * 120.00202 * 245.00124 * 5 2 1 34 34 H 1.09001 * 109.47450 * 299.99504 * 8 6 5 35 35 H 1.08995 * 109.47566 * 59.99792 * 8 6 5 36 36 H 1.09000 * 109.47461 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46806 * 299.99712 * 9 8 6 38 38 H 1.08991 * 109.47221 * 60.00370 * 10 9 8 39 39 H 1.09005 * 109.46743 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47124 * 180.02562 * 11 10 9 41 41 H 1.09000 * 109.47631 * 299.99862 * 11 10 9 42 42 H 0.97001 * 119.99953 * 94.99386 * 14 12 11 43 43 H 1.00902 * 111.00015 * 296.04173 * 19 17 15 44 44 H 1.00894 * 111.00480 * 60.00229 * 19 17 15 45 45 H 1.09000 * 109.47297 * 294.99701 * 20 17 15 46 46 H 1.09002 * 109.47096 * 54.99987 * 20 17 15 47 47 H 1.09000 * 109.46812 * 300.00075 * 21 20 17 48 48 H 1.09002 * 109.47042 * 60.00031 * 21 20 17 49 49 H 0.97002 * 120.00232 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 0.9117 5 7 2.2272 -0.5908 -1.4908 6 6 1.8907 0.1674 -2.6983 7 1 1.7966 1.2243 -2.4491 8 6 0.5653 -0.3423 -3.2678 9 6 0.2142 0.4491 -4.5293 10 6 1.3204 0.2666 -5.5703 11 6 2.6458 0.7763 -5.0007 12 6 2.9969 -0.0152 -3.7394 13 1 3.0910 -1.0722 -3.9881 14 7 4.2664 0.4725 -3.1943 15 6 5.4325 -0.0111 -3.6663 16 8 5.4310 -0.8503 -4.5419 17 6 6.7383 0.4909 -3.1061 18 1 6.6477 0.6128 -2.0266 19 7 7.8026 -0.4774 -3.4018 20 6 7.0827 1.8381 -3.7443 21 6 8.3417 2.4069 -3.0867 22 6 8.6807 3.7342 -3.7149 23 1 8.0604 4.1319 -4.5045 24 6 9.7832 4.4401 -3.2824 25 7 10.5393 3.9550 -2.3220 26 14 10.2037 6.0849 -4.0616 27 1 9.2047 6.4045 -5.1128 28 1 10.1848 7.1447 -3.0215 29 1 11.5563 6.0129 -4.6703 30 1 -0.3633 -1.0167 -0.1498 31 1 -0.3633 0.3787 0.9554 32 1 -0.3634 0.6380 -0.8056 33 1 2.6920 -1.4390 -1.5645 34 1 0.6594 -1.3992 -3.5170 35 1 -0.2227 -0.2126 -2.5260 36 1 -0.7303 0.0863 -4.9347 37 1 0.1202 1.5062 -4.2805 38 1 1.4144 -0.7904 -5.8190 39 1 1.0704 0.8308 -6.4688 40 1 3.4339 0.6467 -5.7426 41 1 2.5519 1.8334 -4.7520 42 1 4.2676 1.1435 -2.4938 43 1 7.6306 -1.3567 -2.9377 44 1 7.9064 -0.6080 -4.3969 45 1 7.2606 1.7000 -4.8108 46 1 6.2533 2.5307 -3.6009 47 1 8.1638 2.5450 -2.0203 48 1 9.1711 1.7143 -3.2301 49 1 11.3148 4.4518 -2.0174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424186448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:46 Heat of formation + Delta-G solvation = -135.170766 kcal Electronic energy + Delta-G solvation = -29918.201264 eV Core-core repulsion = 25813.103896 eV Total energy + Delta-G solvation = -4105.097367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38485 -38.75750 -37.40106 -36.27350 -35.17015 -34.68376 -34.18391 -32.74894 -30.43193 -30.04723 -29.77583 -28.85686 -26.25255 -23.92964 -22.95861 -22.27052 -20.84008 -20.45462 -19.68523 -19.63856 -18.06909 -17.50223 -16.83849 -16.60573 -16.32864 -16.01516 -15.42309 -15.40998 -14.88465 -14.72135 -14.41516 -14.26133 -14.11391 -13.88846 -13.66990 -13.63663 -13.44651 -13.22635 -13.01462 -12.42561 -12.37252 -12.29012 -12.27185 -11.96359 -11.80435 -11.64727 -11.54546 -11.44314 -11.29381 -11.03745 -10.87790 -10.69773 -10.62814 -10.48800 -10.13318 -9.89422 -9.75089 -9.32525 -9.04337 -8.93659 -8.30682 -8.15793 -5.89376 -3.91333 -0.13013 2.28345 2.79395 3.20188 3.37042 3.43885 3.44334 3.48157 3.77309 4.06126 4.25270 4.37252 4.42261 4.49845 4.53868 4.63627 4.74522 4.80759 4.89295 4.99244 5.03093 5.09897 5.15443 5.22169 5.34895 5.41624 5.46205 5.59282 5.60181 5.69430 5.70737 5.81299 5.89301 5.98204 6.07799 6.45205 6.50848 6.56452 6.69853 7.14126 7.41805 7.63465 7.81587 7.84457 8.01518 8.18013 8.34330 8.53108 9.16880 9.71578 11.21599 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.002824 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.334269 B = 9911.135192 C =10676.381704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.677 4.677 2 S 2.610 3.390 3 O -0.949 6.949 4 O -0.956 6.956 5 N -1.113 6.113 6 C 0.138 3.862 7 H 0.100 0.900 8 C -0.140 4.140 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.131 4.131 12 C 0.146 3.854 13 H 0.092 0.908 14 N -0.725 5.725 15 C 0.486 3.514 16 O -0.555 6.555 17 C 0.076 3.924 18 H 0.098 0.902 19 N -0.806 5.806 20 C -0.094 4.094 21 C 0.030 3.970 22 C -0.521 4.521 23 H 0.052 0.948 24 C 0.057 3.943 25 N -0.892 5.892 26 Si 0.889 3.111 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.285 1.285 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.420 0.580 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.406 0.594 43 H 0.333 0.667 44 H 0.347 0.653 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.013 0.987 48 H 0.035 0.965 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.798 -11.194 0.346 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.827 4.827 2 S 2.702 3.298 3 O -0.939 6.939 4 O -0.947 6.947 5 N -0.871 5.871 6 C 0.030 3.970 7 H 0.118 0.882 8 C -0.179 4.179 9 C -0.159 4.159 10 C -0.156 4.156 11 C -0.171 4.171 12 C 0.039 3.961 13 H 0.110 0.890 14 N -0.377 5.377 15 C 0.272 3.728 16 O -0.433 6.433 17 C -0.040 4.040 18 H 0.116 0.884 19 N -0.334 5.334 20 C -0.132 4.132 21 C -0.007 4.007 22 C -0.559 4.559 23 H 0.070 0.930 24 C -0.144 4.144 25 N -0.531 5.531 26 Si 0.717 3.283 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.211 1.211 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.255 0.745 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.241 0.759 43 H 0.145 0.855 44 H 0.161 0.839 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.032 0.968 48 H 0.053 0.947 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -26.613 -10.796 0.904 28.734 hybrid contribution -1.079 0.193 -0.819 1.368 sum -27.692 -10.603 0.085 29.653 Atomic orbital electron populations 1.30677 1.28782 1.11610 1.11606 1.04900 0.77521 0.74544 0.72883 1.93659 1.76667 1.38030 1.85507 1.93638 1.77772 1.61636 1.61620 1.55656 1.73819 1.35478 1.22136 1.21201 0.94461 0.96365 0.84939 0.88167 1.22179 0.95987 1.01609 0.98160 1.21557 0.98801 1.00626 0.94885 1.21523 0.94059 1.01821 0.98228 1.21963 0.97864 1.00170 0.97088 1.21080 0.82691 1.00170 0.92155 0.89000 1.46211 1.05056 1.44620 1.41810 1.22742 0.87088 0.80852 0.82090 1.90633 1.87931 1.33395 1.31310 1.21859 0.84769 0.95989 1.01341 0.88415 1.58982 1.44015 1.13960 1.16448 1.21644 1.01421 0.90551 0.99621 1.19026 0.91377 0.95099 0.95182 1.21314 1.10475 1.04590 1.19536 0.92957 1.24996 0.96394 0.97809 0.95190 1.69987 1.16544 1.38328 1.28286 0.86598 0.78214 0.84295 0.79216 1.19881 1.21112 1.21115 0.85215 0.85292 0.85268 0.74520 0.90497 0.91135 0.91266 0.91363 0.91618 0.91315 0.90548 0.91118 0.75850 0.85505 0.83908 0.92925 0.92794 0.96818 0.94695 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -2.32 10.04 101.05 1.01 -1.31 16 2 S 2.61 19.78 6.08 -107.50 -0.65 19.12 16 3 O -0.95 -10.87 17.39 -57.54 -1.00 -11.87 16 4 O -0.96 -10.97 18.08 -57.54 -1.04 -12.01 16 5 N -1.11 -7.31 5.19 -4.89 -0.03 -7.33 16 6 C 0.14 0.91 2.21 -67.93 -0.15 0.76 16 7 H 0.10 0.65 7.48 -51.93 -0.39 0.26 16 8 C -0.14 -0.62 5.49 -26.73 -0.15 -0.76 16 9 C -0.12 -0.57 5.92 -26.73 -0.16 -0.73 16 10 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 11 C -0.13 -1.20 5.49 -26.73 -0.15 -1.35 16 12 C 0.15 1.37 2.04 -67.93 -0.14 1.23 16 13 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 14 N -0.72 -8.70 4.91 -53.81 -0.26 -8.96 16 15 C 0.49 7.42 7.03 -10.99 -0.08 7.34 16 16 O -0.55 -9.63 15.91 5.56 0.09 -9.54 16 17 C 0.08 1.30 3.15 -68.87 -0.22 1.09 16 18 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 19 N -0.81 -13.82 8.44 -5.66 -0.05 -13.87 16 20 C -0.09 -1.93 4.78 -26.73 -0.13 -2.06 16 21 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 22 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 23 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 25 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 26 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.13 0.27 6.77 -51.92 -0.35 -0.09 16 33 H 0.42 2.63 8.80 -34.47 -0.30 2.33 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.18 5.78 -51.93 -0.30 -0.12 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.41 4.75 8.60 -40.82 -0.35 4.39 16 43 H 0.33 4.98 9.06 -39.29 -0.36 4.62 16 44 H 0.35 5.98 8.58 -39.29 -0.34 5.65 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -37.99 403.96 -10.21 -48.21 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.22 Total: 9.52 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.85 Total: -9.77 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.40 Total: -56.77 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.95 Total: -33.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 19.78 SS G_CDS: -0.65 Total: 19.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.99 -10.21 -48.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424186448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.962 kcal (2) G-P(sol) polarization free energy of solvation -37.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds