Wall clock time and date at job start Wed Apr 1 2020 04:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 110.54010 * 2 1 4 4 O 1.42097 * 110.54219 * 136.75077 * 2 1 3 5 5 N 1.65595 * 104.44875 * 248.37967 * 2 1 3 6 6 C 1.46497 * 120.00313 * 64.99696 * 5 2 1 7 7 H 1.09001 * 109.46991 * 25.00122 * 6 5 2 8 8 C 1.52994 * 109.47491 * 265.00387 * 6 5 2 9 9 C 1.53004 * 109.47639 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47113 * 59.99567 * 9 8 6 11 11 C 1.52998 * 109.47080 * 300.00353 * 10 9 8 12 12 C 1.52998 * 109.47227 * 60.00320 * 11 10 9 13 13 H 1.09001 * 109.47298 * 59.99816 * 12 11 10 14 14 N 1.46502 * 109.47438 * 179.97438 * 12 11 10 15 15 C 1.34776 * 119.99948 * 275.00383 * 14 12 11 16 16 O 1.21280 * 120.00102 * 359.97438 * 15 14 12 17 17 C 1.50695 * 120.00191 * 179.97438 * 15 14 12 18 18 H 1.09009 * 109.47187 * 39.99388 * 17 15 14 19 19 N 1.46897 * 109.47252 * 159.99472 * 17 15 14 20 20 C 1.52997 * 109.47048 * 279.99530 * 17 15 14 21 21 C 1.53005 * 109.47203 * 174.99923 * 20 17 15 22 22 C 1.50700 * 109.47278 * 180.02562 * 21 20 17 23 23 H 1.08003 * 119.99591 * 359.97438 * 22 21 20 24 24 C 1.37875 * 120.00023 * 180.02562 * 22 21 20 25 25 N 1.31512 * 120.00076 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47304 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47381 * 120.00180 * 26 24 22 29 29 H 1.48505 * 109.46939 * 239.99915 * 26 24 22 30 30 H 1.09001 * 109.47190 * 171.62010 * 1 2 3 31 31 H 1.09004 * 109.47089 * 291.62143 * 1 2 3 32 32 H 1.09004 * 109.47568 * 51.62153 * 1 2 3 33 33 H 0.97001 * 120.00202 * 245.00124 * 5 2 1 34 34 H 1.09001 * 109.47450 * 299.99504 * 8 6 5 35 35 H 1.08995 * 109.47566 * 59.99792 * 8 6 5 36 36 H 1.09000 * 109.47461 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46806 * 299.99712 * 9 8 6 38 38 H 1.08991 * 109.47221 * 60.00370 * 10 9 8 39 39 H 1.09005 * 109.46743 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47124 * 180.02562 * 11 10 9 41 41 H 1.09000 * 109.47631 * 299.99862 * 11 10 9 42 42 H 0.97001 * 119.99953 * 94.99386 * 14 12 11 43 43 H 1.00902 * 111.00015 * 296.04173 * 19 17 15 44 44 H 1.00894 * 111.00480 * 60.00229 * 19 17 15 45 45 H 1.09000 * 109.47297 * 294.99701 * 20 17 15 46 46 H 1.09002 * 109.47096 * 54.99987 * 20 17 15 47 47 H 1.09000 * 109.46812 * 300.00075 * 21 20 17 48 48 H 1.09002 * 109.47042 * 60.00031 * 21 20 17 49 49 H 0.97002 * 120.00232 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 0.9117 5 7 2.2272 -0.5908 -1.4908 6 6 1.8907 0.1674 -2.6983 7 1 1.7966 1.2243 -2.4491 8 6 0.5653 -0.3423 -3.2678 9 6 0.2142 0.4491 -4.5293 10 6 1.3204 0.2666 -5.5703 11 6 2.6458 0.7763 -5.0007 12 6 2.9969 -0.0152 -3.7394 13 1 3.0910 -1.0722 -3.9881 14 7 4.2664 0.4725 -3.1943 15 6 5.4325 -0.0111 -3.6663 16 8 5.4310 -0.8503 -4.5419 17 6 6.7383 0.4909 -3.1061 18 1 6.6477 0.6128 -2.0266 19 7 7.8026 -0.4774 -3.4018 20 6 7.0827 1.8381 -3.7443 21 6 8.3417 2.4069 -3.0867 22 6 8.6807 3.7342 -3.7149 23 1 8.0604 4.1319 -4.5045 24 6 9.7832 4.4401 -3.2824 25 7 10.5393 3.9550 -2.3220 26 14 10.2037 6.0849 -4.0616 27 1 9.2047 6.4045 -5.1128 28 1 10.1848 7.1447 -3.0215 29 1 11.5563 6.0129 -4.6703 30 1 -0.3633 -1.0167 -0.1498 31 1 -0.3633 0.3787 0.9554 32 1 -0.3634 0.6380 -0.8056 33 1 2.6920 -1.4390 -1.5645 34 1 0.6594 -1.3992 -3.5170 35 1 -0.2227 -0.2126 -2.5260 36 1 -0.7303 0.0863 -4.9347 37 1 0.1202 1.5062 -4.2805 38 1 1.4144 -0.7904 -5.8190 39 1 1.0704 0.8308 -6.4688 40 1 3.4339 0.6467 -5.7426 41 1 2.5519 1.8334 -4.7520 42 1 4.2676 1.1435 -2.4938 43 1 7.6306 -1.3567 -2.9377 44 1 7.9064 -0.6080 -4.3969 45 1 7.2606 1.7000 -4.8108 46 1 6.2533 2.5307 -3.6009 47 1 8.1638 2.5450 -2.0203 48 1 9.1711 1.7143 -3.2301 49 1 11.3148 4.4518 -2.0174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424186448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:45 Heat of formation + Delta-G solvation = -168.043156 kcal Electronic energy + Delta-G solvation = -29919.626717 eV Core-core repulsion = 25813.103896 eV Total energy + Delta-G solvation = -4106.522821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39332 -39.64996 -38.12441 -36.99395 -36.78741 -35.27619 -35.11153 -34.81028 -31.93977 -31.00779 -30.17949 -29.56464 -27.96221 -25.53037 -23.60731 -23.18329 -22.19232 -21.44473 -20.83893 -20.25458 -18.87928 -18.53831 -18.12067 -17.84108 -17.21967 -17.04715 -16.84697 -16.46100 -16.07812 -15.82579 -15.52765 -15.10393 -14.96175 -14.83097 -14.56468 -14.29032 -14.13580 -13.97565 -13.93020 -13.75419 -13.65363 -13.42174 -13.17157 -13.10396 -12.94602 -12.82393 -12.51898 -12.37679 -12.27429 -12.18024 -12.04946 -11.84958 -11.75321 -11.63713 -11.52385 -11.25917 -11.23743 -10.98665 -10.50740 -10.45517 -10.05954 -9.60228 -8.14014 -6.24720 -0.66850 1.41138 1.41840 1.51166 1.55073 1.74104 2.16583 2.44515 2.91828 3.18832 3.26100 3.45967 3.57023 3.79841 3.82214 3.97732 4.05091 4.09526 4.10296 4.16524 4.23537 4.26246 4.31259 4.43056 4.49324 4.61228 4.76769 4.78935 4.91125 4.92873 4.96603 5.10304 5.19141 5.24231 5.24566 5.29490 5.37188 5.48329 5.56300 5.57323 5.83022 5.97574 6.01994 6.09015 6.29628 6.43940 6.52753 6.93928 7.14048 7.43427 8.97596 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.002824 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.334269 B = 9911.135192 C =10676.381704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.610 3.390 3 O -0.998 6.998 4 O -1.004 7.004 5 N -1.112 6.112 6 C 0.141 3.859 7 H 0.105 0.895 8 C -0.137 4.137 9 C -0.118 4.118 10 C -0.115 4.115 11 C -0.130 4.130 12 C 0.142 3.858 13 H 0.083 0.917 14 N -0.714 5.714 15 C 0.493 3.507 16 O -0.576 6.576 17 C 0.080 3.920 18 H 0.100 0.900 19 N -0.818 5.818 20 C -0.079 4.079 21 C 0.039 3.961 22 C -0.543 4.543 23 H 0.057 0.943 24 C -0.001 4.001 25 N -0.931 5.931 26 Si 0.963 3.037 27 H -0.263 1.263 28 H -0.277 1.277 29 H -0.280 1.280 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.421 0.579 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.409 0.591 43 H 0.346 0.654 44 H 0.346 0.654 45 H 0.045 0.955 46 H 0.064 0.936 47 H -0.010 1.010 48 H 0.006 0.994 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.290 -10.744 -0.186 33.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.707 3.293 3 O -0.988 6.988 4 O -0.995 6.995 5 N -0.869 5.869 6 C 0.033 3.967 7 H 0.122 0.878 8 C -0.176 4.176 9 C -0.156 4.156 10 C -0.153 4.153 11 C -0.169 4.169 12 C 0.036 3.964 13 H 0.101 0.899 14 N -0.364 5.364 15 C 0.278 3.722 16 O -0.456 6.456 17 C -0.036 4.036 18 H 0.118 0.882 19 N -0.347 5.347 20 C -0.118 4.118 21 C 0.001 3.999 22 C -0.581 4.581 23 H 0.075 0.925 24 C -0.198 4.198 25 N -0.571 5.571 26 Si 0.787 3.213 27 H -0.187 1.187 28 H -0.203 1.203 29 H -0.206 1.206 30 H 0.174 0.826 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.256 0.744 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.244 0.756 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.008 0.992 48 H 0.024 0.976 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.097 -10.346 0.377 31.828 hybrid contribution -0.049 0.027 -0.643 0.645 sum -30.146 -10.319 -0.266 31.864 Atomic orbital electron populations 1.30441 1.22362 1.14111 1.13639 1.04594 0.79714 0.72782 0.72252 1.93597 1.79259 1.39920 1.85985 1.93575 1.80206 1.62517 1.63156 1.55469 1.74521 1.35269 1.21687 1.21262 0.94524 0.96916 0.83985 0.87752 1.22217 0.94971 1.01730 0.98666 1.21570 0.98532 1.01253 0.94240 1.21511 0.93219 1.01528 0.99042 1.21924 0.98506 1.00380 0.96088 1.21313 0.82152 0.99543 0.93378 0.89856 1.46173 1.05353 1.43773 1.41130 1.22151 0.87296 0.80882 0.81847 1.90625 1.88201 1.34504 1.32231 1.21635 0.86203 0.94486 1.01232 0.88162 1.58940 1.44484 1.14733 1.16542 1.21360 0.99181 0.92533 0.98710 1.18834 0.92896 0.94099 0.94037 1.21755 1.10850 1.05705 1.19776 0.92510 1.25946 0.96236 1.01995 0.95649 1.70124 1.17115 1.40149 1.29714 0.85442 0.78130 0.79177 0.78522 1.18653 1.20316 1.20589 0.82640 0.83744 0.82822 0.74431 0.89982 0.88164 0.89402 0.90735 0.91838 0.90990 0.93807 0.90960 0.75555 0.84099 0.84048 0.93650 0.91715 0.99209 0.97569 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.71 10.04 113.37 1.14 -0.57 16 2 S 2.61 36.68 6.08 -56.49 -0.34 36.34 16 3 O -1.00 -22.69 17.39 -127.65 -2.22 -24.91 16 4 O -1.00 -23.10 18.08 -127.65 -2.31 -25.41 16 5 N -1.11 -13.15 5.19 -169.39 -0.88 -14.03 16 6 C 0.14 1.59 2.21 44.99 0.10 1.69 16 7 H 0.10 1.13 7.48 -2.39 -0.02 1.11 16 8 C -0.14 -0.70 5.49 30.59 0.17 -0.53 16 9 C -0.12 -0.70 5.92 30.59 0.18 -0.52 16 10 C -0.11 -1.31 5.92 30.59 0.18 -1.13 16 11 C -0.13 -2.31 5.49 30.59 0.17 -2.14 16 12 C 0.14 2.58 2.04 44.99 0.09 2.67 16 13 H 0.08 1.69 7.58 -2.39 -0.02 1.68 16 14 N -0.71 -17.22 4.91 -442.53 -2.17 -19.39 16 15 C 0.49 15.32 7.03 87.66 0.62 15.94 16 16 O -0.58 -20.33 15.91 -3.03 -0.05 -20.37 16 17 C 0.08 2.83 3.15 44.17 0.14 2.97 16 18 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 19 N -0.82 -29.03 8.44 -171.81 -1.45 -30.48 16 20 C -0.08 -3.35 4.78 30.60 0.15 -3.21 16 21 C 0.04 2.09 4.86 29.85 0.15 2.23 16 22 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 23 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 24 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 25 N -0.93 -58.29 13.29 21.45 0.28 -58.01 16 26 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 27 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 29 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 30 H 0.16 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.15 -0.23 6.77 -2.39 -0.02 -0.24 16 33 H 0.42 5.01 8.80 -96.75 -0.85 4.16 16 34 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.10 -0.04 5.78 -2.39 -0.01 -0.05 16 36 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.41 9.61 8.60 -92.71 -0.80 8.81 16 43 H 0.35 10.61 9.06 -89.69 -0.81 9.80 16 44 H 0.35 12.36 8.58 -89.70 -0.77 11.59 16 45 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 47 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 48 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 49 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -85.30 403.96 -5.58 -90.89 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -2.24 Total: 31.56 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 3.77 Total: -13.68 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -4.22 Total: -121.91 kcal Atomic # 8 Polarization: -66.12 SS G_CDS: -4.58 Total: -70.69 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 36.68 SS G_CDS: -0.34 Total: 36.34 kcal Total: -85.30 -5.58 -90.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424186448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.157 kcal (2) G-P(sol) polarization free energy of solvation -85.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds