Wall clock time and date at job start Wed Apr 1 2020 04:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00193 * 2 1 4 4 H 1.48497 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47252 * 300.00344 * 3 2 1 6 6 H 1.48503 * 109.46893 * 60.00190 * 3 2 1 7 7 C 1.37881 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00017 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47026 * 180.02562 * 9 7 2 11 11 C 1.35037 * 125.92824 * 125.00304 * 10 9 7 12 12 C 1.35078 * 107.97713 * 180.02562 * 11 10 9 13 13 C 1.50704 * 126.07342 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.47376 * 256.68129 * 13 12 11 15 15 C 1.46896 * 111.00113 * 183.48864 * 14 13 12 16 16 H 1.08998 * 109.47461 * 325.00279 * 15 14 13 17 17 C 1.53008 * 109.46759 * 85.00392 * 15 14 13 18 18 O 1.42898 * 109.47224 * 64.99889 * 17 15 14 19 19 C 1.53000 * 109.47174 * 205.00136 * 15 14 13 20 20 C 1.53002 * 109.47130 * 65.00102 * 19 15 14 21 21 F 1.39900 * 109.46968 * 179.97438 * 20 19 15 22 22 C 1.40846 * 107.85125 * 359.97438 * 12 11 10 23 23 C 1.48419 * 126.03833 * 179.97438 * 22 12 11 24 24 C 1.39324 * 120.11725 * 42.46871 * 23 22 12 25 25 C 1.38018 * 119.87800 * 179.97438 * 24 23 22 26 26 C 1.38321 * 120.12311 * 359.97438 * 25 24 23 27 27 C 1.38318 * 120.23751 * 0.02562 * 26 25 24 28 28 C 1.38024 * 120.12281 * 359.97438 * 27 26 25 29 29 N 1.31620 * 107.92160 * 0.26614 * 22 12 11 30 30 H 0.97003 * 120.00073 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46785 * 60.00524 * 9 7 2 32 32 H 1.08996 * 109.47326 * 300.00540 * 9 7 2 33 33 H 1.08004 * 126.00839 * 0.02562 * 11 10 9 34 34 H 1.08994 * 109.47118 * 16.68752 * 13 12 11 35 35 H 1.09000 * 109.47182 * 136.68448 * 13 12 11 36 36 H 1.00904 * 111.00184 * 307.44833 * 14 13 12 37 37 H 1.09001 * 109.46704 * 185.00002 * 17 15 14 38 38 H 1.08999 * 109.46899 * 305.00026 * 17 15 14 39 39 H 0.96695 * 114.00349 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47223 * 185.00708 * 19 15 14 41 41 H 1.08998 * 109.47238 * 305.00465 * 19 15 14 42 42 H 1.09001 * 109.46940 * 300.00054 * 20 19 15 43 43 H 1.08998 * 109.46764 * 60.00073 * 20 19 15 44 44 H 1.08003 * 120.06592 * 359.94638 * 24 23 22 45 45 H 1.08001 * 119.94281 * 180.02562 * 25 24 23 46 46 H 1.07999 * 119.87980 * 179.72768 * 26 25 24 47 47 H 1.07997 * 119.94227 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.06282 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 2.2412 -4.6226 0.8951 12 6 3.2581 -5.4438 0.5545 13 6 3.6651 -6.7004 1.2801 14 7 4.8705 -6.4370 2.0773 15 6 5.3451 -7.6620 2.7345 16 1 4.4907 -8.2752 3.0209 17 6 6.2352 -8.4468 1.7686 18 8 7.4133 -7.6895 1.4843 19 6 6.1489 -7.2924 3.9828 20 6 5.2278 -6.6176 5.0012 21 9 5.9627 -6.2802 6.1428 22 6 3.8704 -4.9171 -0.5994 23 6 5.0316 -5.5014 -1.3158 24 6 5.1004 -6.8761 -1.5314 25 6 6.1822 -7.4141 -2.1986 26 6 7.1966 -6.5911 -2.6534 27 6 7.1334 -5.2256 -2.4420 28 6 6.0561 -4.6770 -1.7759 29 7 3.2350 -3.8118 -0.9264 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 1.5756 -4.7510 1.7360 34 1 2.8564 -7.0181 1.9382 35 1 3.8738 -7.4872 0.5551 36 1 5.5968 -6.0264 1.5098 37 1 6.5151 -9.3971 2.2232 38 1 5.6909 -8.6332 0.8429 39 1 8.0253 -8.1273 0.8771 40 1 6.5755 -8.1948 4.4206 41 1 6.9512 -6.6074 3.7088 42 1 4.8013 -5.7151 4.5633 43 1 4.4255 -7.3026 5.2753 44 1 4.3089 -7.5197 -1.1768 45 1 6.2364 -8.4795 -2.3668 46 1 8.0434 -7.0167 -3.1712 47 1 7.9279 -4.5874 -2.7995 48 1 6.0075 -3.6107 -1.6118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593687496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:41 Heat of formation + Delta-G solvation = -11.135386 kcal Electronic energy + Delta-G solvation = -30649.648477 eV Core-core repulsion = 26426.858525 eV Total energy + Delta-G solvation = -4222.789952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -47.48693 -40.65816 -38.71429 -38.33674 -35.59147 -33.95154 -32.74312 -32.12776 -30.82013 -30.26012 -29.53205 -27.95537 -26.84912 -24.45877 -23.73872 -23.14937 -22.40096 -21.69271 -20.80338 -19.87110 -19.24917 -17.68898 -16.79606 -16.55880 -16.26462 -16.02822 -15.82437 -15.55623 -15.34277 -14.97227 -14.77204 -14.55227 -14.29580 -14.16066 -13.83391 -13.60626 -13.44819 -13.26847 -12.95971 -12.69339 -12.54720 -12.26507 -12.08553 -12.04248 -11.94039 -11.53896 -11.35275 -11.06851 -11.03391 -10.92682 -10.83835 -10.79340 -10.61218 -10.28107 -10.22175 -10.03398 -9.60292 -9.09233 -8.83818 -8.65083 -8.37761 -8.17663 -7.58543 -6.27462 -4.32339 1.30063 1.50931 2.70246 3.17776 3.21842 3.29497 3.35054 3.47886 3.95018 4.03848 4.30180 4.39756 4.51106 4.76613 4.86988 4.88999 4.96419 5.01658 5.08185 5.11656 5.13737 5.18861 5.24021 5.27660 5.34924 5.36432 5.52344 5.57688 5.63655 5.70174 5.79749 5.84440 5.98458 6.02879 6.09111 6.19681 6.23122 6.45922 6.58547 6.60778 6.69716 6.91967 6.99248 7.07390 7.10461 7.29251 7.39420 7.54106 7.66808 7.82953 7.94322 8.50989 8.76511 9.33801 10.81612 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.003493 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.055917 B = 8014.063855 C =10058.553103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.256 3.744 10 N -0.321 5.321 11 C 0.066 3.934 12 C -0.248 4.248 13 C 0.143 3.857 14 N -0.676 5.676 15 C 0.090 3.910 16 H 0.088 0.912 17 C 0.047 3.953 18 O -0.562 6.562 19 C -0.131 4.131 20 C 0.064 3.936 21 F -0.228 7.228 22 C 0.076 3.924 23 C 0.015 3.985 24 C -0.106 4.106 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.094 4.094 29 N -0.262 5.262 30 H 0.267 0.733 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.166 0.834 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.356 0.644 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.377 0.623 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.725 -20.301 1.807 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.138 3.862 10 N -0.100 5.100 11 C -0.084 4.084 12 C -0.260 4.260 13 C 0.013 3.987 14 N -0.309 5.309 15 C -0.020 4.020 16 H 0.106 0.894 17 C -0.033 4.033 18 O -0.366 6.366 19 C -0.170 4.170 20 C 0.009 3.991 21 F -0.209 7.209 22 C -0.087 4.087 23 C 0.013 3.987 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.136 4.136 28 C -0.113 4.113 29 N -0.086 5.086 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.176 0.824 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.223 0.777 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.690 -18.366 1.978 21.342 hybrid contribution 0.885 -0.560 -0.518 1.169 sum 11.575 -18.926 1.460 22.233 Atomic orbital electron populations 1.69925 1.06062 1.27581 1.49760 1.24935 0.94975 0.99577 0.94496 0.86277 0.80134 0.82416 0.77746 1.19484 1.20670 1.20711 1.21264 0.94019 0.89251 1.52092 0.91215 1.19778 0.85728 0.81376 0.99280 1.49395 1.23230 1.19167 1.18219 1.22206 0.99974 0.90037 0.96172 1.19538 1.02651 1.02829 1.01025 1.20140 0.92116 0.92815 0.93588 1.60659 1.08795 1.24730 1.36722 1.21601 0.95648 0.91446 0.93351 0.89360 1.22885 0.87479 0.94323 0.98634 1.86489 1.32802 1.48030 1.69307 1.21976 0.99122 1.01443 0.94443 1.21997 0.93099 1.02004 0.82022 1.92731 1.80089 1.94327 1.53747 1.20448 0.97209 0.94796 0.96280 1.17844 0.91771 0.92471 0.96648 1.21114 0.98180 0.94047 0.99216 1.20925 0.94539 0.99299 0.99435 1.21082 0.98801 0.93797 1.00596 1.21056 0.98168 0.95163 0.99225 1.21318 0.93029 1.00206 0.96722 1.77651 1.00990 1.15645 1.14290 0.92350 0.93653 0.92644 0.81723 0.91096 0.95030 0.82374 0.93741 0.93444 0.77658 0.91443 0.89902 0.89112 0.91715 0.86158 0.86530 0.86546 0.86176 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.56 9.23 -34.44 -0.32 -14.88 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.37 6.26 -5.19 -0.03 6.34 16 10 N -0.32 -7.13 3.67 -62.58 -0.23 -7.36 16 11 C 0.07 1.21 11.32 -17.26 -0.20 1.01 16 12 C -0.25 -4.09 5.56 -104.76 -0.58 -4.67 16 13 C 0.14 1.75 5.49 -4.97 -0.03 1.72 16 14 N -0.68 -8.13 5.71 -107.99 -0.62 -8.74 16 15 C 0.09 0.83 2.41 -67.71 -0.16 0.67 16 16 H 0.09 0.69 7.84 -51.93 -0.41 0.28 16 17 C 0.05 0.37 6.71 37.16 0.25 0.62 16 18 O -0.56 -5.12 12.24 -35.23 -0.43 -5.55 16 19 C -0.13 -1.31 5.06 -26.73 -0.14 -1.45 16 20 C 0.06 0.69 7.44 37.16 0.28 0.96 16 21 F -0.23 -3.04 17.36 2.25 0.04 -3.00 16 22 C 0.08 1.41 6.67 -82.78 -0.55 0.86 16 23 C 0.01 0.23 5.74 -104.90 -0.60 -0.38 16 24 C -0.11 -1.32 8.87 -39.26 -0.35 -1.67 16 25 C -0.12 -1.27 10.03 -39.63 -0.40 -1.67 16 26 C -0.12 -1.28 10.04 -39.52 -0.40 -1.68 16 27 C -0.12 -1.42 10.03 -39.63 -0.40 -1.82 16 28 C -0.09 -1.41 9.78 -39.26 -0.38 -1.79 16 29 N -0.26 -5.87 12.43 33.43 0.42 -5.46 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.17 2.50 8.06 -52.48 -0.42 2.08 16 34 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.03 0.35 4.78 -51.93 -0.25 0.11 16 36 H 0.36 4.99 7.89 -39.29 -0.31 4.68 16 37 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.05 0.38 7.31 -51.93 -0.38 0.00 16 39 H 0.38 2.08 9.12 45.56 0.42 2.50 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.00 7.73 -51.93 -0.40 0.60 16 42 H 0.09 1.09 7.75 -51.93 -0.40 0.69 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 1.39 6.17 -52.48 -0.32 1.07 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 48 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -31.21 405.44 -9.35 -40.56 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.25 Total: 7.70 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -4.10 Total: -16.19 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.31 Total: -46.01 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.43 Total: -5.55 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.21 -9.35 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593687496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.422 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds