Wall clock time and date at job start Wed Apr 1 2020 04:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00193 * 2 1 4 4 H 1.48497 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47252 * 300.00344 * 3 2 1 6 6 H 1.48503 * 109.46893 * 60.00190 * 3 2 1 7 7 C 1.37881 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00017 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47026 * 180.02562 * 9 7 2 11 11 C 1.35037 * 125.92824 * 125.00304 * 10 9 7 12 12 C 1.35078 * 107.97713 * 180.02562 * 11 10 9 13 13 C 1.50704 * 126.07342 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.47376 * 256.68129 * 13 12 11 15 15 C 1.46896 * 111.00113 * 183.48864 * 14 13 12 16 16 H 1.08998 * 109.47461 * 325.00279 * 15 14 13 17 17 C 1.53008 * 109.46759 * 85.00392 * 15 14 13 18 18 O 1.42898 * 109.47224 * 64.99889 * 17 15 14 19 19 C 1.53000 * 109.47174 * 205.00136 * 15 14 13 20 20 C 1.53002 * 109.47130 * 65.00102 * 19 15 14 21 21 F 1.39900 * 109.46968 * 179.97438 * 20 19 15 22 22 C 1.40846 * 107.85125 * 359.97438 * 12 11 10 23 23 C 1.48419 * 126.03833 * 179.97438 * 22 12 11 24 24 C 1.39324 * 120.11725 * 42.46871 * 23 22 12 25 25 C 1.38018 * 119.87800 * 179.97438 * 24 23 22 26 26 C 1.38321 * 120.12311 * 359.97438 * 25 24 23 27 27 C 1.38318 * 120.23751 * 0.02562 * 26 25 24 28 28 C 1.38024 * 120.12281 * 359.97438 * 27 26 25 29 29 N 1.31620 * 107.92160 * 0.26614 * 22 12 11 30 30 H 0.97003 * 120.00073 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46785 * 60.00524 * 9 7 2 32 32 H 1.08996 * 109.47326 * 300.00540 * 9 7 2 33 33 H 1.08004 * 126.00839 * 0.02562 * 11 10 9 34 34 H 1.08994 * 109.47118 * 16.68752 * 13 12 11 35 35 H 1.09000 * 109.47182 * 136.68448 * 13 12 11 36 36 H 1.00904 * 111.00184 * 307.44833 * 14 13 12 37 37 H 1.09001 * 109.46704 * 185.00002 * 17 15 14 38 38 H 1.08999 * 109.46899 * 305.00026 * 17 15 14 39 39 H 0.96695 * 114.00349 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47223 * 185.00708 * 19 15 14 41 41 H 1.08998 * 109.47238 * 305.00465 * 19 15 14 42 42 H 1.09001 * 109.46940 * 300.00054 * 20 19 15 43 43 H 1.08998 * 109.46764 * 60.00073 * 20 19 15 44 44 H 1.08003 * 120.06592 * 359.94638 * 24 23 22 45 45 H 1.08001 * 119.94281 * 180.02562 * 25 24 23 46 46 H 1.07999 * 119.87980 * 179.72768 * 26 25 24 47 47 H 1.07997 * 119.94227 * 180.02562 * 27 26 25 48 48 H 1.07994 * 120.06282 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 2.2412 -4.6226 0.8951 12 6 3.2581 -5.4438 0.5545 13 6 3.6651 -6.7004 1.2801 14 7 4.8705 -6.4370 2.0773 15 6 5.3451 -7.6620 2.7345 16 1 4.4907 -8.2752 3.0209 17 6 6.2352 -8.4468 1.7686 18 8 7.4133 -7.6895 1.4843 19 6 6.1489 -7.2924 3.9828 20 6 5.2278 -6.6176 5.0012 21 9 5.9627 -6.2802 6.1428 22 6 3.8704 -4.9171 -0.5994 23 6 5.0316 -5.5014 -1.3158 24 6 5.1004 -6.8761 -1.5314 25 6 6.1822 -7.4141 -2.1986 26 6 7.1966 -6.5911 -2.6534 27 6 7.1334 -5.2256 -2.4420 28 6 6.0561 -4.6770 -1.7759 29 7 3.2350 -3.8118 -0.9264 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 1.5756 -4.7510 1.7360 34 1 2.8564 -7.0181 1.9382 35 1 3.8738 -7.4872 0.5551 36 1 5.5968 -6.0264 1.5098 37 1 6.5151 -9.3971 2.2232 38 1 5.6909 -8.6332 0.8429 39 1 8.0253 -8.1273 0.8771 40 1 6.5755 -8.1948 4.4206 41 1 6.9512 -6.6074 3.7088 42 1 4.8013 -5.7151 4.5633 43 1 4.4255 -7.3026 5.2753 44 1 4.3089 -7.5197 -1.1768 45 1 6.2364 -8.4795 -2.3668 46 1 8.0434 -7.0167 -3.1712 47 1 7.9279 -4.5874 -2.7995 48 1 6.0075 -3.6107 -1.6118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593687496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:40 Heat of formation + Delta-G solvation = -32.006587 kcal Electronic energy + Delta-G solvation = -30650.553520 eV Core-core repulsion = 26426.858525 eV Total energy + Delta-G solvation = -4223.694995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.45796 -42.08160 -39.73095 -39.07753 -36.41786 -35.69495 -34.17037 -33.33325 -31.77317 -31.66555 -30.74674 -29.09935 -28.22345 -25.72811 -25.20871 -23.98399 -23.43831 -23.00643 -21.66214 -21.15364 -20.56960 -18.69105 -18.34476 -17.88861 -17.36677 -17.06270 -16.73958 -16.54438 -16.48478 -16.19955 -16.00399 -15.62790 -15.52848 -15.30487 -14.98285 -14.75832 -14.38469 -14.30779 -14.22538 -13.94091 -13.77854 -13.65465 -13.43356 -13.16829 -12.95275 -12.83317 -12.70401 -12.57766 -12.34210 -12.13847 -12.01560 -11.92833 -11.78448 -11.68886 -11.46054 -11.21158 -10.79714 -10.78936 -10.45073 -9.78933 -9.58631 -9.23615 -8.92987 -8.37691 -6.51592 0.26570 0.55598 1.22977 1.32557 1.34544 1.47383 1.85660 1.95198 2.31220 2.93833 2.99729 3.30771 3.64211 3.66550 3.76798 3.92161 4.05455 4.06528 4.11230 4.16249 4.27590 4.34536 4.39011 4.45188 4.49294 4.55768 4.63421 4.64881 4.69209 4.71741 4.72803 4.85779 4.88632 5.00928 5.08620 5.12593 5.16217 5.22882 5.30711 5.37731 5.52748 5.53416 5.65314 5.71565 5.80489 5.90497 6.14640 6.25169 6.32192 6.52047 6.61128 6.98847 7.02317 7.18638 8.70155 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.003493 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.055917 B = 8014.063855 C =10058.553103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.047 0.953 9 C 0.273 3.727 10 N -0.351 5.351 11 C 0.054 3.946 12 C -0.236 4.236 13 C 0.150 3.850 14 N -0.688 5.688 15 C 0.090 3.910 16 H 0.111 0.889 17 C 0.049 3.951 18 O -0.584 6.584 19 C -0.123 4.123 20 C 0.060 3.940 21 F -0.244 7.244 22 C 0.083 3.917 23 C -0.015 4.015 24 C -0.103 4.103 25 C -0.111 4.111 26 C -0.111 4.111 27 C -0.121 4.121 28 C -0.121 4.121 29 N -0.324 5.324 30 H 0.273 0.727 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.192 0.808 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.343 0.657 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.391 0.609 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.136 0.864 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 -23.682 1.781 27.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.065 0.935 9 C 0.154 3.846 10 N -0.131 5.131 11 C -0.094 4.094 12 C -0.248 4.248 13 C 0.021 3.979 14 N -0.319 5.319 15 C -0.020 4.020 16 H 0.129 0.871 17 C -0.030 4.030 18 O -0.391 6.391 19 C -0.162 4.162 20 C 0.006 3.994 21 F -0.226 7.226 22 C -0.081 4.081 23 C -0.017 4.017 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.139 4.139 28 C -0.140 4.140 29 N -0.147 5.147 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.209 0.791 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.240 0.760 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.149 0.851 45 H 0.175 0.825 46 H 0.172 0.828 47 H 0.154 0.846 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.401 -21.780 1.961 25.139 hybrid contribution 0.487 0.349 -0.548 0.812 sum 12.888 -21.430 1.412 25.047 Atomic orbital electron populations 1.69993 1.07116 1.28717 1.49972 1.25703 0.95839 1.02613 0.93831 0.85341 0.78298 0.78546 0.78491 1.20254 1.19666 1.19212 1.21383 0.93135 0.91136 1.52795 0.93465 1.19255 0.85855 0.81787 0.97748 1.49065 1.23942 1.19966 1.20104 1.22832 1.01085 0.89243 0.96243 1.20034 1.01106 1.03647 1.00040 1.20188 0.92884 0.90730 0.94104 1.60597 1.08329 1.26657 1.36347 1.21716 0.96696 0.90654 0.92962 0.87126 1.22865 0.87017 0.94536 0.98561 1.86471 1.33531 1.49106 1.69997 1.21895 0.98290 1.01327 0.94651 1.22132 0.93803 1.01897 0.81606 1.92698 1.80588 1.94533 1.54740 1.21126 0.97018 0.93411 0.96540 1.17932 0.91142 0.94046 0.98599 1.21249 0.99337 0.92392 0.99210 1.21355 0.92978 1.01243 0.97243 1.21521 0.99625 0.92657 0.99073 1.21276 0.97404 0.96726 0.98496 1.21227 0.94979 0.98854 0.98989 1.77565 1.02528 1.18536 1.16115 0.91780 0.96416 0.92698 0.79140 0.89154 0.93173 0.83864 0.91615 0.92825 0.75960 0.89801 0.92487 0.90910 0.89127 0.85063 0.82536 0.82827 0.84585 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 13.29 21.45 0.28 -52.83 16 2 C 0.02 1.17 5.46 84.66 0.46 1.63 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -31.91 9.23 25.60 0.24 -31.67 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.27 14.53 6.26 85.63 0.54 15.06 16 10 N -0.35 -16.63 3.67 -351.91 -1.29 -17.92 16 11 C 0.05 2.04 11.32 83.47 0.95 2.98 16 12 C -0.24 -7.83 5.56 -19.95 -0.11 -7.94 16 13 C 0.15 3.37 5.49 85.56 0.47 3.84 16 14 N -0.69 -15.49 5.71 -495.58 -2.83 -18.32 16 15 C 0.09 1.40 2.41 44.92 0.11 1.51 16 16 H 0.11 1.26 7.84 -2.39 -0.02 1.24 16 17 C 0.05 0.61 6.71 71.98 0.48 1.09 16 18 O -0.58 -9.11 12.24 -148.98 -1.82 -10.93 16 19 C -0.12 -2.23 5.06 30.59 0.15 -2.08 16 20 C 0.06 1.23 7.44 71.98 0.54 1.76 16 21 F -0.24 -6.38 17.36 44.97 0.78 -5.60 16 22 C 0.08 3.20 6.67 42.53 0.28 3.49 16 23 C -0.02 -0.48 5.74 -20.04 -0.12 -0.59 16 24 C -0.10 -2.31 8.87 22.48 0.20 -2.11 16 25 C -0.11 -1.78 10.03 22.24 0.22 -1.56 16 26 C -0.11 -1.84 10.04 22.31 0.22 -1.61 16 27 C -0.12 -2.76 10.03 22.24 0.22 -2.54 16 28 C -0.12 -3.80 9.78 22.48 0.22 -3.58 16 29 N -0.32 -15.60 12.43 -48.16 -0.60 -16.20 16 30 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 2.86 8.07 -2.39 -0.02 2.84 16 33 H 0.19 5.82 8.06 -2.91 -0.02 5.80 16 34 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 35 H 0.05 0.95 4.78 -2.39 -0.01 0.94 16 36 H 0.34 9.40 7.89 -89.69 -0.71 8.70 16 37 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.05 0.60 7.31 -2.39 -0.02 0.59 16 39 H 0.39 3.08 9.12 -74.06 -0.68 2.41 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.34 7.73 -2.39 -0.02 1.32 16 42 H 0.07 1.74 7.75 -2.39 -0.02 1.72 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.13 2.61 6.17 -2.91 -0.02 2.59 16 45 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 46 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 47 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 48 H 0.09 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -73.72 405.44 1.23 -72.49 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.39 Total: 24.51 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 5.08 Total: -22.32 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -4.44 Total: -105.28 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.82 Total: -10.93 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.78 Total: -5.60 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.72 1.23 -72.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593687496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.485 kcal (2) G-P(sol) polarization free energy of solvation -73.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds