Wall clock time and date at job start Wed Apr 1 2020 04:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 110.54302 * 2 1 4 4 O 1.42099 * 110.53666 * 223.25084 * 2 1 3 5 5 N 1.65596 * 104.44851 * 111.62932 * 2 1 3 6 6 C 1.46926 * 120.63259 * 89.99898 * 5 2 1 7 7 C 1.53195 * 108.77412 * 233.60672 * 6 5 2 8 8 C 1.53047 * 109.31335 * 305.36565 * 7 6 5 9 9 C 1.53039 * 109.53459 * 61.36454 * 8 7 6 10 10 H 1.08998 * 109.49994 * 58.62150 * 9 8 7 11 11 N 1.46510 * 109.49129 * 178.68296 * 9 8 7 12 12 C 1.34774 * 119.99879 * 274.93170 * 11 9 8 13 13 O 1.21284 * 120.00306 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99654 * 180.02562 * 12 11 9 15 15 H 1.08997 * 109.47338 * 40.00836 * 14 12 11 16 16 N 1.46908 * 109.46581 * 160.00456 * 14 12 11 17 17 C 1.52996 * 109.47417 * 280.00188 * 14 12 11 18 18 C 1.52997 * 109.47131 * 175.00038 * 17 14 12 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 17 14 20 20 C 1.50698 * 109.47184 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46926 * 60.00512 * 24 22 20 26 26 H 1.48506 * 109.46961 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47227 * 300.00303 * 24 22 20 28 28 C 1.46937 * 120.60166 * 270.01774 * 5 2 1 29 29 H 1.09005 * 109.46654 * 308.37405 * 1 2 3 30 30 H 1.09000 * 109.47417 * 68.37116 * 1 2 3 31 31 H 1.09000 * 109.47330 * 188.37598 * 1 2 3 32 32 H 1.09000 * 109.58300 * 113.82474 * 6 5 2 33 33 H 1.08995 * 109.58559 * 353.39588 * 6 5 2 34 34 H 1.08997 * 109.49656 * 185.41105 * 7 6 5 35 35 H 1.09000 * 109.49774 * 65.31446 * 7 6 5 36 36 H 1.09000 * 109.45862 * 301.34557 * 8 7 6 37 37 H 1.09001 * 109.44787 * 181.38000 * 8 7 6 38 38 H 0.96995 * 119.99764 * 94.93969 * 11 9 8 39 39 H 1.00900 * 111.00217 * 296.04413 * 16 14 12 40 40 H 1.00898 * 111.00130 * 60.00195 * 16 14 12 41 41 H 1.09001 * 109.46993 * 54.99907 * 17 14 12 42 42 H 1.09004 * 109.47298 * 295.00321 * 17 14 12 43 43 H 1.09001 * 109.46832 * 60.00325 * 18 17 14 44 44 H 1.08993 * 109.47194 * 299.99846 * 18 17 14 45 45 H 1.09001 * 109.46801 * 300.00272 * 19 18 17 46 46 H 1.09001 * 109.46998 * 59.99868 * 19 18 17 47 47 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.61664 * 6.62130 * 28 5 2 49 49 H 1.09000 * 109.56473 * 246.19235 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 7 2.2272 -0.5911 1.4907 6 6 2.4140 -2.0335 1.6986 7 6 1.5308 -2.4816 2.8674 8 6 1.8432 -1.6238 4.0958 9 6 1.5309 -0.1574 3.7888 10 1 0.4815 -0.0594 3.5106 11 7 1.8004 0.6586 4.9754 12 6 0.8576 0.7933 5.9289 13 8 -0.2139 0.2387 5.8050 14 6 1.1347 1.6332 7.1492 15 1 1.6819 2.5294 6.8568 16 7 -0.1362 2.0185 7.7773 17 6 1.9715 0.8266 8.1442 18 6 2.3580 1.7181 9.3260 19 6 3.1954 0.9117 10.3208 20 6 3.5766 1.7900 11.4845 21 1 3.2537 2.8202 11.5120 22 6 4.3369 1.2781 12.5145 23 7 4.7297 0.0234 12.4812 24 14 4.8089 2.3666 13.9573 25 1 3.5793 2.8586 14.6292 26 1 5.6206 1.5835 14.9233 27 1 5.6013 3.5226 13.4668 28 6 2.4135 0.3176 2.6303 29 1 -0.3633 0.6380 0.8057 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3634 -1.0167 0.1497 32 1 3.4592 -2.2367 1.9316 33 1 2.1271 -2.5729 0.7960 34 1 1.7313 -3.5287 3.0943 35 1 0.4816 -2.3618 2.5973 36 1 2.8982 -1.7248 4.3504 37 1 1.2335 -1.9569 4.9356 38 1 2.6574 1.1019 5.0745 39 1 -0.6794 2.6065 7.1631 40 1 -0.6624 1.2045 8.0575 41 1 2.8740 0.4654 7.6511 42 1 1.3897 -0.0220 8.5042 43 1 1.4555 2.0793 9.8190 44 1 2.9398 2.5666 8.9659 45 1 2.6139 0.0629 10.6808 46 1 4.0978 0.5508 9.8274 47 1 5.2649 -0.3366 13.2056 48 1 2.1260 1.3289 2.3427 49 1 3.4588 0.3064 2.9390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594431066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:33 Heat of formation + Delta-G solvation = -126.098441 kcal Electronic energy + Delta-G solvation = -28982.229751 eV Core-core repulsion = 24877.525789 eV Total energy + Delta-G solvation = -4104.703962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42139 -38.74830 -37.66632 -36.44313 -35.78842 -34.84309 -33.35462 -32.57032 -31.36700 -30.40725 -29.99784 -27.88074 -25.37385 -25.05319 -23.50391 -22.27602 -20.96664 -20.38268 -20.02712 -19.24783 -18.26294 -17.41732 -16.89728 -16.62175 -16.46604 -16.27102 -15.73433 -15.15886 -15.05440 -14.92009 -14.52411 -14.44944 -14.15528 -13.96709 -13.87645 -13.81036 -13.66226 -13.33396 -12.99437 -12.59821 -12.57015 -12.41375 -12.38532 -11.93597 -11.78876 -11.68522 -11.61573 -11.45531 -11.34307 -11.17279 -11.11296 -10.74015 -10.65591 -10.43647 -10.26370 -9.65717 -9.62363 -9.27721 -9.23088 -9.06276 -8.60472 -8.30079 -5.96014 -3.97665 -0.28523 1.99820 2.47861 2.97453 3.35310 3.36090 3.40153 3.43061 3.60963 3.98710 4.27003 4.28477 4.37388 4.47077 4.48744 4.54545 4.59201 4.69404 4.80771 4.86070 4.97061 5.13809 5.14434 5.21876 5.30494 5.37139 5.39829 5.41767 5.48594 5.60485 5.78127 5.87412 5.90652 5.93291 6.08999 6.24760 6.41731 6.80094 6.98973 7.04728 7.22765 7.30957 7.47638 7.73474 7.88954 8.03507 8.05398 8.48669 9.09763 9.66092 11.15365 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.001897 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.402122 B =14759.613757 C =15088.148182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.611 3.389 3 O -0.952 6.952 4 O -0.953 6.953 5 N -0.995 5.995 6 C 0.118 3.882 7 C -0.133 4.133 8 C -0.130 4.130 9 C 0.128 3.872 10 H 0.089 0.911 11 N -0.726 5.726 12 C 0.487 3.513 13 O -0.549 6.549 14 C 0.077 3.923 15 H 0.101 0.899 16 N -0.811 5.811 17 C -0.103 4.103 18 C -0.100 4.100 19 C 0.020 3.980 20 C -0.517 4.517 21 H 0.055 0.945 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.115 3.885 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.338 0.662 40 H 0.350 0.650 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.260 0.740 48 H 0.097 0.903 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 -2.838 -27.587 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.704 3.296 3 O -0.943 6.943 4 O -0.943 6.943 5 N -0.833 5.833 6 C -0.007 4.007 7 C -0.172 4.172 8 C -0.169 4.169 9 C 0.021 3.979 10 H 0.107 0.893 11 N -0.379 5.379 12 C 0.272 3.728 13 O -0.426 6.426 14 C -0.038 4.038 15 H 0.119 0.881 16 N -0.340 5.340 17 C -0.141 4.141 18 C -0.138 4.138 19 C -0.017 4.017 20 C -0.555 4.555 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.719 3.281 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 C -0.012 4.012 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.240 0.760 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.116 0.884 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.307 -2.731 -27.690 29.038 hybrid contribution -0.422 -0.016 0.410 0.589 sum -8.730 -2.748 -27.280 28.774 Atomic orbital electron populations 1.30602 1.28569 1.11754 1.11521 1.04957 0.77704 0.74052 0.72916 1.93624 1.77523 1.37633 1.85486 1.93616 1.77581 1.61685 1.61436 1.57709 1.84386 1.14589 1.26590 1.21540 1.01101 0.78580 0.99468 1.21927 1.00168 1.00240 0.94906 1.21892 1.02688 0.93963 0.98326 1.21289 1.00552 0.91049 0.84985 0.89298 1.46130 1.18783 1.51965 1.20977 1.22595 0.83726 0.81458 0.85028 1.90667 1.24999 1.48350 1.78582 1.21790 0.94222 0.97787 0.90050 0.88082 1.59031 1.06839 1.23963 1.44123 1.21645 0.97608 0.98566 0.96268 1.21540 1.00322 0.97423 0.94500 1.19114 0.94340 0.95216 0.93052 1.21240 1.32135 0.97404 1.04752 0.92715 1.25034 0.96194 0.95009 0.98359 1.69957 1.37350 1.13484 1.32949 0.86670 0.78517 0.80511 0.82358 1.20254 1.21400 1.20286 1.21617 1.00929 0.93002 0.85604 0.85317 0.85361 0.85284 0.90357 0.88856 0.90022 0.91398 0.91055 0.90792 0.76034 0.85028 0.83578 0.91885 0.91990 0.91852 0.93648 0.96835 0.96982 0.93056 0.88440 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.46 10.99 101.05 1.11 -1.35 16 2 S 2.61 17.50 6.05 -107.50 -0.65 16.85 16 3 O -0.95 -9.56 16.72 -57.54 -0.96 -10.53 16 4 O -0.95 -9.21 16.72 -57.54 -0.96 -10.17 16 5 N -1.00 -6.07 3.22 -113.51 -0.37 -6.44 16 6 C 0.12 0.64 6.32 -3.71 -0.02 0.61 16 7 C -0.13 -0.75 6.08 -26.61 -0.16 -0.91 16 8 C -0.13 -1.01 5.46 -26.69 -0.15 -1.16 16 9 C 0.13 0.99 2.60 -67.81 -0.18 0.81 16 10 H 0.09 0.77 7.58 -51.93 -0.39 0.38 16 11 N -0.73 -6.33 5.08 -53.68 -0.27 -6.60 16 12 C 0.49 5.75 7.03 -10.99 -0.08 5.67 16 13 O -0.55 -8.06 15.91 5.55 0.09 -7.98 16 14 C 0.08 0.96 3.15 -68.86 -0.22 0.74 16 15 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 16 N -0.81 -10.38 8.44 -5.65 -0.05 -10.42 16 17 C -0.10 -1.59 4.84 -26.73 -0.13 -1.72 16 18 C -0.10 -1.97 5.04 -26.73 -0.13 -2.11 16 19 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 20 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 21 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 22 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 23 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 24 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.11 0.72 5.79 -3.71 -0.02 0.70 16 29 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.43 7.10 -51.93 -0.37 0.06 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.40 2.74 8.60 -40.82 -0.35 2.39 16 39 H 0.34 3.70 9.06 -39.29 -0.36 3.34 16 40 H 0.35 4.69 8.58 -39.29 -0.34 4.35 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.30 7.75 -51.93 -0.40 0.90 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.10 0.58 7.10 -51.93 -0.37 0.21 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 407.10 15.07 6.13 6.13 Total: -1.00 -37.21 407.10 -10.31 -47.51 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.46 Total: 3.02 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.53 Total: -11.79 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.05 Total: -49.76 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.84 Total: -28.67 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 17.50 SS G_CDS: -0.65 Total: 16.85 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.21 -10.31 -47.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594431066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.584 kcal (2) G-P(sol) polarization free energy of solvation -37.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds