Wall clock time and date at job start Wed Apr 1 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 110.54302 * 2 1 4 4 O 1.42099 * 110.53666 * 223.25084 * 2 1 3 5 5 N 1.65596 * 104.44851 * 111.62932 * 2 1 3 6 6 C 1.46926 * 120.63259 * 89.99898 * 5 2 1 7 7 C 1.53195 * 108.77412 * 233.60672 * 6 5 2 8 8 C 1.53047 * 109.31335 * 305.36565 * 7 6 5 9 9 C 1.53039 * 109.53459 * 61.36454 * 8 7 6 10 10 H 1.08998 * 109.49994 * 58.62150 * 9 8 7 11 11 N 1.46510 * 109.49129 * 178.68296 * 9 8 7 12 12 C 1.34774 * 119.99879 * 274.93170 * 11 9 8 13 13 O 1.21284 * 120.00306 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99654 * 180.02562 * 12 11 9 15 15 H 1.08997 * 109.47338 * 40.00836 * 14 12 11 16 16 N 1.46908 * 109.46581 * 160.00456 * 14 12 11 17 17 C 1.52996 * 109.47417 * 280.00188 * 14 12 11 18 18 C 1.52997 * 109.47131 * 175.00038 * 17 14 12 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 17 14 20 20 C 1.50698 * 109.47184 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46926 * 60.00512 * 24 22 20 26 26 H 1.48506 * 109.46961 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47227 * 300.00303 * 24 22 20 28 28 C 1.46937 * 120.60166 * 270.01774 * 5 2 1 29 29 H 1.09005 * 109.46654 * 308.37405 * 1 2 3 30 30 H 1.09000 * 109.47417 * 68.37116 * 1 2 3 31 31 H 1.09000 * 109.47330 * 188.37598 * 1 2 3 32 32 H 1.09000 * 109.58300 * 113.82474 * 6 5 2 33 33 H 1.08995 * 109.58559 * 353.39588 * 6 5 2 34 34 H 1.08997 * 109.49656 * 185.41105 * 7 6 5 35 35 H 1.09000 * 109.49774 * 65.31446 * 7 6 5 36 36 H 1.09000 * 109.45862 * 301.34557 * 8 7 6 37 37 H 1.09001 * 109.44787 * 181.38000 * 8 7 6 38 38 H 0.96995 * 119.99764 * 94.93969 * 11 9 8 39 39 H 1.00900 * 111.00217 * 296.04413 * 16 14 12 40 40 H 1.00898 * 111.00130 * 60.00195 * 16 14 12 41 41 H 1.09001 * 109.46993 * 54.99907 * 17 14 12 42 42 H 1.09004 * 109.47298 * 295.00321 * 17 14 12 43 43 H 1.09001 * 109.46832 * 60.00325 * 18 17 14 44 44 H 1.08993 * 109.47194 * 299.99846 * 18 17 14 45 45 H 1.09001 * 109.46801 * 300.00272 * 19 18 17 46 46 H 1.09001 * 109.46998 * 59.99868 * 19 18 17 47 47 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.61664 * 6.62130 * 28 5 2 49 49 H 1.09000 * 109.56473 * 246.19235 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 7 2.2272 -0.5911 1.4907 6 6 2.4140 -2.0335 1.6986 7 6 1.5308 -2.4816 2.8674 8 6 1.8432 -1.6238 4.0958 9 6 1.5309 -0.1574 3.7888 10 1 0.4815 -0.0594 3.5106 11 7 1.8004 0.6586 4.9754 12 6 0.8576 0.7933 5.9289 13 8 -0.2139 0.2387 5.8050 14 6 1.1347 1.6332 7.1492 15 1 1.6819 2.5294 6.8568 16 7 -0.1362 2.0185 7.7773 17 6 1.9715 0.8266 8.1442 18 6 2.3580 1.7181 9.3260 19 6 3.1954 0.9117 10.3208 20 6 3.5766 1.7900 11.4845 21 1 3.2537 2.8202 11.5120 22 6 4.3369 1.2781 12.5145 23 7 4.7297 0.0234 12.4812 24 14 4.8089 2.3666 13.9573 25 1 3.5793 2.8586 14.6292 26 1 5.6206 1.5835 14.9233 27 1 5.6013 3.5226 13.4668 28 6 2.4135 0.3176 2.6303 29 1 -0.3633 0.6380 0.8057 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3634 -1.0167 0.1497 32 1 3.4592 -2.2367 1.9316 33 1 2.1271 -2.5729 0.7960 34 1 1.7313 -3.5287 3.0943 35 1 0.4816 -2.3618 2.5973 36 1 2.8982 -1.7248 4.3504 37 1 1.2335 -1.9569 4.9356 38 1 2.6574 1.1019 5.0745 39 1 -0.6794 2.6065 7.1631 40 1 -0.6624 1.2045 8.0575 41 1 2.8740 0.4654 7.6511 42 1 1.3897 -0.0220 8.5042 43 1 1.4555 2.0793 9.8190 44 1 2.9398 2.5666 8.9659 45 1 2.6139 0.0629 10.6808 46 1 4.0978 0.5508 9.8274 47 1 5.2649 -0.3366 13.2056 48 1 2.1260 1.3289 2.3427 49 1 3.4588 0.3064 2.9390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594431066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:32 Heat of formation + Delta-G solvation = -156.526079 kcal Electronic energy + Delta-G solvation = -28983.549192 eV Core-core repulsion = 24877.525789 eV Total energy + Delta-G solvation = -4106.023403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.28037 -39.41990 -38.29417 -37.11675 -37.05636 -35.61668 -35.20738 -33.14328 -33.05918 -31.08375 -30.32498 -29.44056 -26.76574 -25.65975 -24.62811 -23.39815 -21.75392 -21.56199 -21.24879 -19.81810 -18.79925 -18.43096 -18.30177 -17.58458 -17.27626 -17.07744 -16.80177 -16.46699 -16.02991 -15.64922 -15.60847 -15.41874 -15.13414 -14.70829 -14.61531 -14.44918 -14.24579 -14.11255 -14.01147 -13.84583 -13.62488 -13.24151 -13.21154 -13.07797 -13.01852 -12.81300 -12.47950 -12.45823 -12.37444 -12.23592 -12.17267 -12.06164 -11.89204 -11.67115 -11.45168 -11.35047 -11.21604 -10.92488 -10.50003 -10.24778 -9.95405 -9.63746 -8.15822 -6.26003 -0.77203 1.42214 1.45327 1.48889 1.52209 1.53495 2.21374 2.44493 2.88386 3.11082 3.17191 3.48078 3.57014 3.70278 3.84896 3.93264 3.98119 4.03529 4.06813 4.16265 4.19943 4.22018 4.30169 4.46843 4.55926 4.71398 4.74063 4.79166 4.88507 4.92584 4.96312 4.97376 5.08623 5.16709 5.18090 5.28988 5.30938 5.36808 5.40990 5.58135 5.62640 5.86903 5.95960 6.08018 6.32320 6.45843 6.54576 6.91848 7.17086 7.42900 8.95641 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.001897 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.402122 B =14759.613757 C =15088.148182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.618 3.382 3 O -0.991 6.991 4 O -0.987 6.987 5 N -0.996 5.996 6 C 0.116 3.884 7 C -0.127 4.127 8 C -0.129 4.129 9 C 0.130 3.870 10 H 0.083 0.917 11 N -0.713 5.713 12 C 0.490 3.510 13 O -0.579 6.579 14 C 0.085 3.915 15 H 0.124 0.876 16 N -0.820 5.820 17 C -0.093 4.093 18 C -0.084 4.084 19 C 0.022 3.978 20 C -0.539 4.539 21 H 0.060 0.940 22 C -0.004 4.004 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.269 1.269 26 H -0.285 1.285 27 H -0.265 1.265 28 C 0.118 3.882 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.416 0.584 39 H 0.349 0.651 40 H 0.345 0.655 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.055 0.945 45 H -0.017 1.017 46 H -0.008 1.008 47 H 0.262 0.738 48 H 0.103 0.897 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 -1.771 -28.477 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.715 3.285 3 O -0.981 6.981 4 O -0.978 6.978 5 N -0.833 5.833 6 C -0.008 4.008 7 C -0.167 4.167 8 C -0.168 4.168 9 C 0.023 3.977 10 H 0.101 0.899 11 N -0.365 5.365 12 C 0.276 3.724 13 O -0.458 6.458 14 C -0.030 4.030 15 H 0.141 0.859 16 N -0.349 5.349 17 C -0.131 4.131 18 C -0.122 4.122 19 C -0.015 4.015 20 C -0.577 4.577 21 H 0.078 0.922 22 C -0.201 4.201 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.194 1.194 26 H -0.210 1.210 27 H -0.190 1.190 28 C -0.009 4.009 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.253 0.747 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.001 0.999 46 H 0.011 0.989 47 H 0.071 0.929 48 H 0.121 0.879 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.687 -1.646 -28.612 29.947 hybrid contribution -0.321 -0.394 0.674 0.844 sum -9.009 -2.040 -27.938 29.425 Atomic orbital electron populations 1.30440 1.24225 1.13460 1.13026 1.04526 0.79028 0.72623 0.72349 1.93571 1.79364 1.39263 1.85935 1.93569 1.79336 1.62274 1.62589 1.57583 1.84860 1.14820 1.26049 1.21622 1.01225 0.78214 0.99754 1.21899 1.00613 1.00271 0.93867 1.21861 1.02132 0.94349 0.98440 1.21349 1.00604 0.90858 0.84867 0.89886 1.46035 1.18582 1.51332 1.20579 1.22336 0.83723 0.81057 0.85320 1.90659 1.26368 1.49498 1.79296 1.21639 0.93845 0.98152 0.89396 0.85869 1.59029 1.07125 1.23985 1.44746 1.21441 0.98469 0.97574 0.95629 1.21283 0.98903 0.97431 0.94579 1.19051 0.93943 0.94684 0.93838 1.21713 1.32181 0.97995 1.05837 0.92224 1.25987 0.96135 0.96449 1.01509 1.70094 1.38079 1.15364 1.34030 0.85536 0.78467 0.78720 0.78534 1.19384 1.21025 1.18984 1.21597 1.01004 0.93229 0.85049 0.84203 0.83713 0.83441 0.90201 0.87842 0.89129 0.90756 0.90985 0.93478 0.74691 0.83730 0.84144 0.90795 0.93703 0.92658 0.92591 0.99855 0.98922 0.92922 0.87912 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.01 10.99 113.37 1.25 -1.76 16 2 S 2.62 32.04 6.05 -56.49 -0.34 31.69 16 3 O -0.99 -19.29 16.72 -127.65 -2.13 -21.42 16 4 O -0.99 -18.39 16.72 -127.65 -2.13 -20.52 16 5 N -1.00 -10.75 3.22 -513.05 -1.65 -12.41 16 6 C 0.12 1.09 6.32 86.36 0.55 1.63 16 7 C -0.13 -1.25 6.08 30.68 0.19 -1.06 16 8 C -0.13 -1.91 5.46 30.62 0.17 -1.74 16 9 C 0.13 1.84 2.60 45.07 0.12 1.95 16 10 H 0.08 1.32 7.58 -2.39 -0.02 1.31 16 11 N -0.71 -11.39 5.08 -442.15 -2.25 -13.63 16 12 C 0.49 11.04 7.03 87.66 0.62 11.66 16 13 O -0.58 -16.65 15.91 -3.04 -0.05 -16.70 16 14 C 0.09 2.00 3.15 44.17 0.14 2.14 16 15 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 16 N -0.82 -20.17 8.44 -171.79 -1.45 -21.62 16 17 C -0.09 -2.84 4.84 30.59 0.15 -2.69 16 18 C -0.08 -3.30 5.04 30.60 0.15 -3.15 16 19 C 0.02 1.14 4.97 29.85 0.15 1.29 16 20 C -0.54 -30.75 9.11 25.60 0.23 -30.51 16 21 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 22 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 23 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 24 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 C 0.12 1.30 5.79 86.36 0.50 1.80 16 29 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.79 7.10 -2.39 -0.02 0.77 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.42 4.80 8.60 -92.71 -0.80 4.00 16 39 H 0.35 7.17 9.06 -89.69 -0.81 6.35 16 40 H 0.35 9.16 8.58 -89.70 -0.77 8.39 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.52 8.14 -2.38 -0.02 1.51 16 43 H 0.05 2.25 7.75 -2.39 -0.02 2.23 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 46 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.10 1.06 7.10 -2.39 -0.02 1.05 16 49 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -81.20 407.10 -4.45 -85.65 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -1.41 Total: 19.63 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.66 Total: -20.19 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -5.06 Total: -104.60 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -4.32 Total: -58.64 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 32.04 SS G_CDS: -0.34 Total: 31.69 kcal Total: -81.20 -4.45 -85.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594431066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.881 kcal (2) G-P(sol) polarization free energy of solvation -81.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds