Wall clock time and date at job start Wed Apr 1 2020 04:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48497 * 109.47456 * 270.00091 * 3 2 1 5 5 H 1.48504 * 109.47332 * 30.00088 * 3 2 1 6 6 H 1.48500 * 109.47130 * 149.99937 * 3 2 1 7 7 C 1.37871 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00060 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00196 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46780 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99417 * 170.00120 * 10 9 7 12 12 C 1.53251 * 109.33605 * 187.25279 * 11 10 9 13 13 N 1.47081 * 108.51732 * 306.16472 * 12 11 10 14 14 C 1.34776 * 120.87983 * 231.18303 * 13 12 11 15 15 O 1.21351 * 120.00258 * 5.06798 * 14 13 12 16 16 C 1.49450 * 119.99676 * 185.05916 * 14 13 12 17 17 O 1.21347 * 120.00081 * 274.77837 * 16 14 13 18 18 N 1.34777 * 119.99678 * 94.78881 * 16 14 13 19 19 C 1.47045 * 120.94073 * 174.93746 * 18 16 14 20 20 C 1.53289 * 109.40084 * 115.92695 * 19 18 16 21 21 N 1.46436 * 109.16251 * 46.06452 * 20 19 18 22 22 C 1.34509 * 128.20956 * 161.63843 * 21 20 19 23 23 N 1.30769 * 108.60089 * 179.48223 * 22 21 20 24 24 C 1.34434 * 109.32647 * 0.15516 * 23 22 21 25 25 C 1.33753 * 107.74809 * 0.02562 * 24 23 22 26 26 C 1.47561 * 120.95951 * 354.90481 * 18 16 14 27 27 C 1.47073 * 118.23707 * 51.46287 * 13 12 11 28 28 C 1.46901 * 110.99903 * 294.29476 * 10 9 7 29 29 H 0.97003 * 120.00398 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46969 * 59.99806 * 9 7 2 31 31 H 1.09001 * 109.46684 * 299.99439 * 9 7 2 32 32 H 1.08995 * 109.49835 * 67.29616 * 11 10 9 33 33 H 1.09003 * 109.51667 * 307.21650 * 11 10 9 34 34 H 1.09001 * 109.62621 * 186.46204 * 12 11 10 35 35 H 1.08996 * 109.62839 * 65.87792 * 12 11 10 36 36 H 1.08994 * 109.48538 * 355.94691 * 19 18 16 37 37 H 1.08998 * 109.48071 * 235.90493 * 19 18 16 38 38 H 1.08994 * 109.52720 * 286.15927 * 20 19 18 39 39 H 1.09000 * 109.57092 * 165.99768 * 20 19 18 40 40 H 1.08004 * 125.69721 * 359.50138 * 22 21 20 41 41 H 1.07998 * 126.13187 * 180.02562 * 24 23 22 42 42 H 1.09004 * 110.01699 * 103.93937 * 26 18 16 43 43 H 1.09002 * 109.94092 * 342.61498 * 26 18 16 44 44 H 1.09005 * 109.63189 * 68.24574 * 27 13 12 45 45 H 1.09005 * 109.62979 * 188.82595 * 27 13 12 46 46 H 1.08999 * 109.49665 * 292.71148 * 28 10 9 47 47 H 1.09004 * 109.49368 * 52.79419 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4501 -2.6250 -0.2376 12 6 5.8899 -4.0828 -0.4106 13 7 5.4259 -4.8520 0.7540 14 6 6.2758 -5.6320 1.4510 15 8 7.4582 -5.6359 1.1782 16 6 5.7619 -6.4919 2.5600 17 8 5.6316 -6.0308 3.6749 18 7 5.4433 -7.7797 2.3219 19 6 5.0414 -8.6742 3.4176 20 6 3.5893 -9.1174 3.2065 21 7 3.4079 -9.5204 1.8105 22 6 2.4258 -10.2728 1.2826 23 7 2.6321 -10.3853 -0.0038 24 6 3.7487 -9.7143 -0.3357 25 6 4.2459 -9.1723 0.7815 26 6 5.4872 -8.3321 0.9543 27 6 4.0086 -4.7523 1.1340 28 6 3.6442 -3.2636 1.2496 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6807 0.8905 31 1 3.8752 -0.6796 -0.8895 32 1 5.9723 -2.1860 0.6124 33 1 5.6891 -2.0635 -1.1409 34 1 6.9771 -4.1323 -0.4726 35 1 5.4494 -4.4928 -1.3194 36 1 5.1260 -8.1463 4.3675 37 1 5.6907 -9.5496 3.4290 38 1 2.9186 -8.2896 3.4367 39 1 3.3659 -9.9600 3.8608 40 1 1.6040 -10.7106 1.8298 41 1 4.1692 -9.6284 -1.3267 42 1 6.3757 -8.9513 0.8303 43 1 5.4926 -7.5213 0.2258 44 1 3.3907 -5.2254 0.3707 45 1 3.8513 -5.2448 2.0936 46 1 4.1914 -2.8157 2.0790 47 1 2.5728 -3.1654 1.4250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601531914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:02 Heat of formation + Delta-G solvation = 35.943139 kcal Electronic energy + Delta-G solvation = -31515.352636 eV Core-core repulsion = 27314.524124 eV Total energy + Delta-G solvation = -4200.828512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70639 -41.07685 -39.21480 -37.73883 -36.91986 -34.73533 -34.25348 -32.47835 -31.41197 -31.11136 -29.79401 -28.91562 -26.66391 -26.20031 -25.07170 -23.66255 -23.05321 -21.97395 -21.44789 -20.62193 -19.92914 -18.67931 -18.16553 -17.82794 -17.07052 -16.81645 -16.63147 -16.48740 -15.48899 -15.17962 -15.06468 -14.73191 -14.66255 -14.56094 -14.28937 -14.13256 -14.04685 -13.73711 -13.58997 -13.52580 -13.08408 -12.97786 -12.87895 -12.47846 -12.34875 -12.22507 -11.78190 -11.66687 -11.32115 -11.19935 -10.90837 -10.64962 -10.42330 -10.32969 -9.97544 -9.91126 -9.78912 -9.56973 -9.41082 -8.85259 -8.70844 -8.64540 -7.57661 -6.13093 -4.11637 1.64052 1.66480 1.77421 2.22558 2.42611 2.85150 2.95406 3.23340 3.31384 3.32843 3.76594 3.90442 4.02362 4.35093 4.36060 4.40198 4.45492 4.49899 4.66037 4.85727 4.94806 4.98663 5.05732 5.09664 5.13353 5.21288 5.26113 5.32816 5.43499 5.51959 5.58215 5.61622 5.74356 5.88685 6.03895 6.20622 6.25361 6.33636 6.38607 6.50154 6.71608 6.81988 6.84474 7.02607 7.31629 7.45517 7.61892 7.71026 7.73479 7.85557 8.53842 8.93288 9.48042 10.99628 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.002956 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.988348 B = 9471.416318 C =10370.574191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.514 4.514 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.036 3.964 12 C 0.117 3.883 13 N -0.588 5.588 14 C 0.514 3.486 15 O -0.518 6.518 16 C 0.528 3.472 17 O -0.504 6.504 18 N -0.608 5.608 19 C 0.100 3.900 20 C 0.089 3.911 21 N -0.454 5.454 22 C 0.195 3.805 23 N -0.493 5.493 24 C -0.002 4.002 25 C -0.048 4.048 26 C 0.189 3.811 27 C 0.109 3.891 28 C 0.052 3.948 29 H 0.265 0.735 30 H -0.010 1.010 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.207 0.793 41 H 0.174 0.826 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.030 0.970 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.354 -20.993 5.055 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.093 4.093 12 C -0.005 4.005 13 N -0.322 5.322 14 C 0.296 3.704 15 O -0.394 6.394 16 C 0.311 3.689 17 O -0.377 6.377 18 N -0.344 5.344 19 C -0.023 4.023 20 C -0.035 4.035 21 N -0.138 5.138 22 C -0.088 4.088 23 N -0.211 5.211 24 C -0.150 4.150 25 C -0.162 4.162 26 C 0.066 3.934 27 C -0.014 4.014 28 C -0.077 4.077 29 H 0.074 0.926 30 H 0.008 0.992 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.224 0.776 41 H 0.191 0.809 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.048 0.952 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.037 -21.215 4.759 23.948 hybrid contribution 1.065 1.852 1.297 2.499 sum 11.103 -19.364 6.056 23.128 Atomic orbital electron populations 1.69883 1.06123 1.26978 1.50629 1.24882 0.94730 0.98869 0.94670 0.86877 0.80293 0.84022 0.78654 1.20053 1.21144 1.19315 1.20983 0.88523 0.94764 1.50914 0.90075 1.20184 0.97230 0.83539 0.95353 1.61924 1.09978 1.19501 1.33644 1.22475 0.90517 0.94975 1.01344 1.21937 1.00599 0.91148 0.86817 1.48331 1.10346 1.44051 1.29482 1.19972 0.86793 0.81620 0.82002 1.90803 1.15016 1.67397 1.66175 1.20403 0.76813 0.81955 0.89760 1.90828 1.51112 1.72444 1.23268 1.48183 1.67328 1.09899 1.08993 1.21921 0.93420 0.94590 0.92381 1.22382 0.98737 1.02295 0.80061 1.45327 1.21032 1.39228 1.08214 1.24939 0.95055 0.98053 0.90715 1.70562 1.16785 1.22478 1.11238 1.21827 0.94644 1.00638 0.97927 1.21103 0.97785 1.07901 0.89454 1.20394 0.93817 0.96649 0.82581 1.22205 0.79505 0.99128 1.00551 1.22412 1.03324 0.90899 0.91082 0.92553 0.99231 0.95440 0.95147 0.89529 0.88810 0.89753 0.86315 0.89393 0.88781 0.87450 0.77614 0.80905 0.88522 0.87791 0.89645 0.90594 0.95183 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.51 -13.93 8.96 -34.44 -0.31 -14.24 16 8 H 0.08 2.38 7.37 -52.48 -0.39 1.99 16 9 C 0.16 3.76 3.79 -4.97 -0.02 3.74 16 10 N -0.53 -10.18 4.62 -235.45 -1.09 -11.27 16 11 C 0.04 0.58 5.62 -3.69 -0.02 0.55 16 12 C 0.12 1.56 6.61 -3.60 -0.02 1.54 16 13 N -0.59 -8.19 3.00 -172.68 -0.52 -8.71 16 14 C 0.51 7.35 5.65 -11.59 -0.07 7.28 16 15 O -0.52 -8.44 16.55 5.50 0.09 -8.35 16 16 C 0.53 6.84 5.67 -11.59 -0.07 6.78 16 17 O -0.50 -7.77 16.33 5.50 0.09 -7.68 16 18 N -0.61 -5.73 2.97 -173.98 -0.52 -6.25 16 19 C 0.10 0.64 6.39 -3.60 -0.02 0.62 16 20 C 0.09 0.47 7.17 -3.93 -0.03 0.44 16 21 N -0.45 -3.61 3.13 -114.04 -0.36 -3.97 16 22 C 0.19 1.67 12.65 -90.63 -1.15 0.52 16 23 N -0.49 -5.64 11.27 -14.87 -0.17 -5.80 16 24 C 0.00 -0.02 11.84 -17.99 -0.21 -0.23 16 25 C -0.05 -0.43 6.70 -81.68 -0.55 -0.98 16 26 C 0.19 1.56 6.60 -4.52 -0.03 1.53 16 27 C 0.11 1.55 6.51 -3.37 -0.02 1.53 16 28 C 0.05 0.93 5.47 -3.46 -0.02 0.91 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 31 H 0.03 0.63 7.40 -51.93 -0.38 0.25 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.27 7.99 -51.93 -0.41 0.86 16 34 H 0.09 1.20 7.04 -51.93 -0.37 0.83 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.12 0.80 7.03 -51.93 -0.37 0.43 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.21 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.92 6.69 -51.93 -0.35 0.57 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.03 6.29 -51.93 -0.33 0.70 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.11 2.10 6.67 -51.93 -0.35 1.75 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -35.33 378.39 -9.99 -45.33 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.71 Total: -1.19 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: -2.63 Total: 11.87 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -1.87 Total: -61.95 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.33 -9.99 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601531914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.269 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds