Wall clock time and date at job start Wed Apr 1 2020 04:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99855 * 2 1 4 4 H 1.48497 * 109.47456 * 270.00091 * 3 2 1 5 5 H 1.48504 * 109.47332 * 30.00088 * 3 2 1 6 6 H 1.48500 * 109.47130 * 149.99937 * 3 2 1 7 7 C 1.37871 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00060 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00196 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46780 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99417 * 170.00120 * 10 9 7 12 12 C 1.53251 * 109.33605 * 187.25279 * 11 10 9 13 13 N 1.47081 * 108.51732 * 306.16472 * 12 11 10 14 14 C 1.34776 * 120.87983 * 231.18303 * 13 12 11 15 15 O 1.21351 * 120.00258 * 5.06798 * 14 13 12 16 16 C 1.49450 * 119.99676 * 185.05916 * 14 13 12 17 17 O 1.21347 * 120.00081 * 274.77837 * 16 14 13 18 18 N 1.34777 * 119.99678 * 94.78881 * 16 14 13 19 19 C 1.47045 * 120.94073 * 174.93746 * 18 16 14 20 20 C 1.53289 * 109.40084 * 115.92695 * 19 18 16 21 21 N 1.46436 * 109.16251 * 46.06452 * 20 19 18 22 22 C 1.34509 * 128.20956 * 161.63843 * 21 20 19 23 23 N 1.30769 * 108.60089 * 179.48223 * 22 21 20 24 24 C 1.34434 * 109.32647 * 0.15516 * 23 22 21 25 25 C 1.33753 * 107.74809 * 0.02562 * 24 23 22 26 26 C 1.47561 * 120.95951 * 354.90481 * 18 16 14 27 27 C 1.47073 * 118.23707 * 51.46287 * 13 12 11 28 28 C 1.46901 * 110.99903 * 294.29476 * 10 9 7 29 29 H 0.97003 * 120.00398 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46969 * 59.99806 * 9 7 2 31 31 H 1.09001 * 109.46684 * 299.99439 * 9 7 2 32 32 H 1.08995 * 109.49835 * 67.29616 * 11 10 9 33 33 H 1.09003 * 109.51667 * 307.21650 * 11 10 9 34 34 H 1.09001 * 109.62621 * 186.46204 * 12 11 10 35 35 H 1.08996 * 109.62839 * 65.87792 * 12 11 10 36 36 H 1.08994 * 109.48538 * 355.94691 * 19 18 16 37 37 H 1.08998 * 109.48071 * 235.90493 * 19 18 16 38 38 H 1.08994 * 109.52720 * 286.15927 * 20 19 18 39 39 H 1.09000 * 109.57092 * 165.99768 * 20 19 18 40 40 H 1.08004 * 125.69721 * 359.50138 * 22 21 20 41 41 H 1.07998 * 126.13187 * 180.02562 * 24 23 22 42 42 H 1.09004 * 110.01699 * 103.93937 * 26 18 16 43 43 H 1.09002 * 109.94092 * 342.61498 * 26 18 16 44 44 H 1.09005 * 109.63189 * 68.24574 * 27 13 12 45 45 H 1.09005 * 109.62979 * 188.82595 * 27 13 12 46 46 H 1.08999 * 109.49665 * 292.71148 * 28 10 9 47 47 H 1.09004 * 109.49368 * 52.79419 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4501 -2.6250 -0.2376 12 6 5.8899 -4.0828 -0.4106 13 7 5.4259 -4.8520 0.7540 14 6 6.2758 -5.6320 1.4510 15 8 7.4582 -5.6359 1.1782 16 6 5.7619 -6.4919 2.5600 17 8 5.6316 -6.0308 3.6749 18 7 5.4433 -7.7797 2.3219 19 6 5.0414 -8.6742 3.4176 20 6 3.5893 -9.1174 3.2065 21 7 3.4079 -9.5204 1.8105 22 6 2.4258 -10.2728 1.2826 23 7 2.6321 -10.3853 -0.0038 24 6 3.7487 -9.7143 -0.3357 25 6 4.2459 -9.1723 0.7815 26 6 5.4872 -8.3321 0.9543 27 6 4.0086 -4.7523 1.1340 28 6 3.6442 -3.2636 1.2496 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6807 0.8905 31 1 3.8752 -0.6796 -0.8895 32 1 5.9723 -2.1860 0.6124 33 1 5.6891 -2.0635 -1.1409 34 1 6.9771 -4.1323 -0.4726 35 1 5.4494 -4.4928 -1.3194 36 1 5.1260 -8.1463 4.3675 37 1 5.6907 -9.5496 3.4290 38 1 2.9186 -8.2896 3.4367 39 1 3.3659 -9.9600 3.8608 40 1 1.6040 -10.7106 1.8298 41 1 4.1692 -9.6284 -1.3267 42 1 6.3757 -8.9513 0.8303 43 1 5.4926 -7.5213 0.2258 44 1 3.3907 -5.2254 0.3707 45 1 3.8513 -5.2448 2.0936 46 1 4.1914 -2.8157 2.0790 47 1 2.5728 -3.1654 1.4250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601531914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:01 Heat of formation + Delta-G solvation = 10.732948 kcal Electronic energy + Delta-G solvation = -31516.445832 eV Core-core repulsion = 27314.524124 eV Total energy + Delta-G solvation = -4201.921708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.36628 -42.12268 -40.30938 -39.05948 -37.73467 -36.19367 -34.91205 -34.47395 -32.38708 -32.08583 -30.80363 -30.27880 -27.98526 -27.03157 -26.08050 -24.89037 -24.12976 -23.09112 -22.57885 -21.78570 -20.82394 -19.70235 -18.99981 -18.95900 -18.69977 -18.04479 -17.43179 -17.16681 -16.63766 -16.39960 -16.18536 -16.12437 -15.97569 -15.65405 -15.31958 -15.25877 -15.09672 -14.80601 -14.51068 -14.45564 -14.36691 -14.17142 -13.71967 -13.60215 -13.47613 -13.25329 -13.05591 -12.79961 -12.73990 -12.63243 -12.39904 -12.32275 -12.00333 -11.87973 -11.45549 -11.06657 -10.87474 -10.78547 -10.53648 -10.33755 -10.08058 -9.38295 -9.15964 -8.28881 -6.32282 0.72143 0.76440 1.01305 1.21024 1.34708 1.36224 1.45650 1.72402 2.04060 2.17321 2.33370 2.77420 3.01077 3.08413 3.36340 3.41198 3.71626 3.85121 3.88888 3.89561 3.94632 4.05606 4.13431 4.15875 4.27541 4.30590 4.37869 4.41868 4.49870 4.60169 4.63472 4.67816 4.73647 4.75414 4.87279 4.90472 4.94735 5.04197 5.15598 5.22032 5.49814 5.62818 5.72294 5.79824 5.96943 6.20560 6.23369 6.38734 6.48726 6.55627 6.73785 7.07696 7.31437 8.87098 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.002956 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.988348 B = 9471.416318 C =10370.574191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.515 4.515 8 H 0.045 0.955 9 C 0.171 3.829 10 N -0.534 5.534 11 C 0.036 3.964 12 C 0.122 3.878 13 N -0.588 5.588 14 C 0.516 3.484 15 O -0.538 6.538 16 C 0.528 3.472 17 O -0.535 6.535 18 N -0.598 5.598 19 C 0.094 3.906 20 C 0.090 3.910 21 N -0.454 5.454 22 C 0.197 3.803 23 N -0.536 5.536 24 C -0.022 4.022 25 C -0.051 4.051 26 C 0.191 3.809 27 C 0.127 3.873 28 C 0.055 3.945 29 H 0.267 0.733 30 H -0.017 1.017 31 H 0.036 0.964 32 H 0.023 0.977 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.146 0.854 40 H 0.239 0.761 41 H 0.181 0.819 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.020 0.980 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.953 -21.981 5.363 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.045 3.955 10 N -0.259 5.259 11 C -0.093 4.093 12 C 0.001 3.999 13 N -0.321 5.321 14 C 0.299 3.701 15 O -0.415 6.415 16 C 0.311 3.689 17 O -0.411 6.411 18 N -0.333 5.333 19 C -0.027 4.027 20 C -0.032 4.032 21 N -0.138 5.138 22 C -0.085 4.085 23 N -0.255 5.255 24 C -0.169 4.169 25 C -0.166 4.166 26 C 0.068 3.932 27 C 0.004 3.996 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.001 0.999 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.164 0.836 40 H 0.255 0.745 41 H 0.198 0.802 42 H 0.135 0.865 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.038 0.962 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.654 -22.253 5.060 25.625 hybrid contribution 0.527 2.032 1.210 2.423 sum 12.181 -20.221 6.269 24.425 Atomic orbital electron populations 1.70031 1.08008 1.28071 1.52428 1.25764 0.95515 1.02882 0.94417 0.85788 0.79214 0.79064 0.79300 1.18771 1.21019 1.17952 1.21216 0.90777 0.93423 1.49951 0.93721 1.19953 0.94515 0.85877 0.95202 1.61840 1.12500 1.17319 1.34222 1.22589 0.87869 0.97091 1.01724 1.21964 1.01356 0.89415 0.87209 1.48341 1.10020 1.44120 1.29664 1.20225 0.86429 0.81515 0.81940 1.90787 1.15769 1.68052 1.66933 1.20144 0.77110 0.82899 0.88783 1.90819 1.53005 1.73265 1.24012 1.48252 1.65616 1.09012 1.10373 1.22210 0.94677 0.94594 0.91217 1.22575 0.97665 1.03707 0.79257 1.45501 1.20583 1.38748 1.08953 1.25551 0.95435 0.97258 0.90262 1.70531 1.17864 1.24083 1.13038 1.22081 0.94812 1.01165 0.98851 1.21127 0.98049 1.07805 0.89608 1.20491 0.94443 0.96595 0.81692 1.21960 0.79940 0.96352 1.01366 1.22321 1.01550 0.93235 0.90329 0.92437 0.99903 0.94573 0.95884 0.87938 0.87635 0.88065 0.86459 0.87098 0.89225 0.83610 0.74533 0.80152 0.86494 0.88380 0.88900 0.89717 0.96191 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.96 21.44 0.30 -57.37 16 2 C 0.01 0.68 5.47 84.65 0.46 1.14 16 3 Si 0.94 43.09 27.47 68.60 1.88 44.97 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.06 6.54 99.48 0.65 -10.40 16 7 C -0.52 -28.58 8.96 25.60 0.23 -28.35 16 8 H 0.04 2.74 7.37 -2.91 -0.02 2.72 16 9 C 0.17 7.86 3.79 85.56 0.32 8.18 16 10 N -0.53 -20.48 4.62 -898.83 -4.15 -24.63 16 11 C 0.04 1.09 5.62 86.39 0.49 1.57 16 12 C 0.12 3.02 6.61 86.35 0.57 3.60 16 13 N -0.59 -15.61 3.00 -818.60 -2.46 -18.07 16 14 C 0.52 14.08 5.65 87.27 0.49 14.58 16 15 O -0.54 -16.78 16.55 -3.25 -0.05 -16.84 16 16 C 0.53 13.04 5.67 87.27 0.49 13.53 16 17 O -0.54 -16.12 16.33 -3.24 -0.05 -16.17 16 18 N -0.60 -10.14 2.97 -822.70 -2.44 -12.58 16 19 C 0.09 0.97 6.39 86.37 0.55 1.52 16 20 C 0.09 0.70 7.17 86.49 0.62 1.32 16 21 N -0.45 -6.18 3.13 -514.73 -1.61 -7.80 16 22 C 0.20 2.99 12.65 180.35 2.28 5.27 16 23 N -0.54 -11.78 11.27 -200.97 -2.26 -14.04 16 24 C -0.02 -0.42 11.84 83.28 0.99 0.57 16 25 C -0.05 -0.83 6.70 40.76 0.27 -0.56 16 26 C 0.19 2.78 6.60 85.49 0.56 3.35 16 27 C 0.13 3.54 6.51 86.51 0.56 4.10 16 28 C 0.05 1.99 5.47 86.54 0.47 2.46 16 29 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 30 H -0.02 -0.79 7.18 -2.39 -0.02 -0.80 16 31 H 0.04 1.60 7.40 -2.39 -0.02 1.59 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 2.77 7.99 -2.39 -0.02 2.76 16 34 H 0.11 2.45 7.04 -2.39 -0.02 2.43 16 35 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.12 1.34 7.03 -2.39 -0.02 1.32 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.24 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.10 1.58 6.69 -2.39 -0.02 1.56 16 44 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 45 H 0.08 2.25 6.29 -2.38 -0.02 2.23 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 3.28 6.67 -2.39 -0.02 3.27 16 Total: -1.00 -78.10 378.39 -0.54 -78.64 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.94 Total: 11.60 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 9.37 Total: 32.28 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -12.63 Total: -134.49 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.11 Total: -33.01 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -78.10 -0.54 -78.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601531914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.377 kcal (2) G-P(sol) polarization free energy of solvation -78.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds