Wall clock time and date at job start Wed Apr 1 2020 04:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99963 * 2 1 4 4 H 1.48507 * 109.47067 * 269.99631 * 3 2 1 5 5 H 1.48495 * 109.47481 * 29.99856 * 3 2 1 6 6 H 1.48498 * 109.47163 * 150.00220 * 3 2 1 7 7 C 1.37875 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99704 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99955 * 180.02562 * 7 2 1 10 10 N 1.46907 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00128 * 294.30355 * 10 9 7 12 12 C 1.53237 * 109.34028 * 172.74849 * 11 10 9 13 13 N 1.47082 * 108.52363 * 53.82616 * 12 11 10 14 14 C 1.34774 * 120.87799 * 128.83689 * 13 12 11 15 15 O 1.21590 * 119.99451 * 174.98225 * 14 13 12 16 16 N 1.34768 * 120.00598 * 354.98789 * 14 13 12 17 17 C 1.46499 * 120.00153 * 185.02725 * 16 14 13 18 18 H 1.08998 * 110.27154 * 35.61283 * 17 16 14 19 19 C 1.54343 * 110.30212 * 157.79434 * 17 16 14 20 20 C 1.54346 * 102.39485 * 145.28048 * 19 17 16 21 21 C 1.51381 * 105.16914 * 333.64110 * 20 19 17 22 22 C 1.38461 * 130.36697 * 197.18906 * 21 20 19 23 23 C 1.38321 * 120.19303 * 180.02562 * 22 21 20 24 24 F 1.35103 * 120.06037 * 179.97438 * 23 22 21 25 25 C 1.38481 * 119.88370 * 0.02562 * 23 22 21 26 26 C 1.38057 * 119.90731 * 0.02562 * 25 23 22 27 27 C 1.38233 * 109.75318 * 17.19586 * 21 20 19 28 28 C 1.47082 * 118.23637 * 308.81931 * 13 12 11 29 29 C 1.46897 * 110.99651 * 169.99997 * 10 9 7 30 30 H 0.97003 * 120.00138 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47024 * 60.00143 * 9 7 2 32 32 H 1.08992 * 109.47493 * 299.99551 * 9 7 2 33 33 H 1.09001 * 109.49385 * 292.70482 * 11 10 9 34 34 H 1.09001 * 109.49571 * 52.78739 * 11 10 9 35 35 H 1.08997 * 109.62574 * 294.11724 * 12 11 10 36 36 H 1.08997 * 109.63158 * 173.54053 * 12 11 10 37 37 H 0.97000 * 119.99930 * 5.01505 * 16 14 13 38 38 H 1.08998 * 110.82413 * 263.50560 * 19 17 16 39 39 H 1.09002 * 110.82769 * 27.05507 * 19 17 16 40 40 H 1.08996 * 110.30579 * 214.72037 * 20 19 17 41 41 H 1.09005 * 110.38518 * 92.60800 * 20 19 17 42 42 H 1.07999 * 119.90311 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.04539 * 180.02562 * 25 23 22 44 44 H 1.07996 * 119.87933 * 180.02562 * 26 25 23 45 45 H 1.09001 * 109.62834 * 291.47124 * 28 13 12 46 46 H 1.09003 * 109.62550 * 170.89395 * 28 13 12 47 47 H 1.09003 * 109.49298 * 307.21328 * 29 10 9 48 48 H 1.09000 * 109.49642 * 67.27217 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 3.6440 -3.2639 1.2495 12 6 4.0097 -4.7477 1.1375 13 7 5.4258 -4.8522 0.7538 14 6 6.2754 -5.6326 1.4506 15 8 7.4198 -5.7793 1.0667 16 7 5.8567 -6.2504 2.5727 17 6 6.8074 -7.0087 3.3897 18 1 7.7827 -6.5220 3.3838 19 6 6.2828 -7.1440 4.8349 20 6 6.7844 -8.5465 5.2395 21 6 6.9124 -9.3117 3.9396 22 6 7.0097 -10.6730 3.7061 23 6 7.1205 -11.1508 2.4127 24 9 7.2157 -12.4796 2.1880 25 6 7.1346 -10.2646 1.3487 26 6 7.0386 -8.9073 1.5819 27 6 6.9257 -8.4280 2.8767 28 6 5.8898 -4.0829 -0.4107 29 6 5.4500 -2.6251 -0.2377 30 1 -0.4850 0.8401 0.0004 31 1 3.8744 -0.6808 0.8905 32 1 3.8752 -0.6797 -0.8894 33 1 4.1913 -2.8160 2.0789 34 1 2.5726 -3.1656 1.4248 35 1 3.3885 -5.2215 0.3775 36 1 3.8538 -5.2369 2.0989 37 1 4.9259 -6.1929 2.8396 38 1 6.7155 -6.3775 5.4776 39 1 5.1938 -7.1006 4.8576 40 1 6.0614 -9.0324 5.8946 41 1 7.7534 -8.4753 5.7335 42 1 6.9999 -11.3637 4.5362 43 1 7.2205 -10.6349 0.3377 44 1 7.0492 -8.2166 0.7517 45 1 5.4493 -4.4928 -1.3196 46 1 6.9769 -4.1325 -0.4727 47 1 5.6885 -2.0636 -1.1410 48 1 5.9722 -2.1858 0.6123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601562460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:32 Heat of formation + Delta-G solvation = -45.637216 kcal Electronic energy + Delta-G solvation = -30340.830489 eV Core-core repulsion = 26116.544426 eV Total energy + Delta-G solvation = -4224.286063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.94769 -41.82777 -40.76215 -39.06721 -36.95955 -35.95465 -34.74955 -34.25773 -32.27870 -31.67257 -30.41574 -29.80189 -27.93033 -26.74998 -24.70581 -23.99608 -23.56923 -22.45993 -22.11336 -21.74101 -20.48666 -19.18924 -18.89578 -18.12135 -17.79835 -17.30984 -17.13212 -16.65140 -16.58979 -16.32032 -16.08245 -15.97753 -15.69691 -15.29298 -15.22578 -15.01456 -14.67249 -14.45395 -14.34299 -14.22763 -13.87800 -13.61032 -13.41428 -13.15370 -13.08127 -12.90929 -12.73110 -12.66492 -12.51364 -12.33383 -12.19781 -11.96835 -11.88863 -11.83358 -11.76240 -11.40493 -11.19396 -10.76740 -10.28628 -9.93431 -9.62316 -9.50925 -9.03500 -8.26972 -6.29823 0.06397 0.21090 1.36214 1.37204 1.46878 1.61396 2.09102 2.34985 2.51836 2.87128 3.05743 3.06788 3.16316 3.44195 3.55442 3.91040 3.94363 3.96268 4.04990 4.12924 4.16751 4.18912 4.24850 4.26587 4.41810 4.49970 4.61657 4.65689 4.73860 4.77612 4.81956 4.87044 4.90623 4.95031 5.03621 5.06583 5.07305 5.11409 5.13562 5.17415 5.30198 5.42109 5.45302 5.53751 5.60642 5.85134 5.88361 6.02695 6.31841 6.60922 6.76498 6.91574 7.33859 7.52098 8.88899 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.002112 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.811078 B =13255.575429 C =13502.244174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.512 4.512 8 H 0.046 0.954 9 C 0.172 3.828 10 N -0.539 5.539 11 C 0.053 3.947 12 C 0.127 3.873 13 N -0.628 5.628 14 C 0.707 3.293 15 O -0.625 6.625 16 N -0.728 5.728 17 C 0.201 3.799 18 H 0.088 0.912 19 C -0.116 4.116 20 C -0.074 4.074 21 C -0.062 4.062 22 C -0.145 4.145 23 C 0.087 3.913 24 F -0.146 7.146 25 C -0.166 4.166 26 C -0.070 4.070 27 C -0.130 4.130 28 C 0.144 3.856 29 C 0.042 3.958 30 H 0.266 0.734 31 H -0.015 1.015 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.408 0.592 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.156 0.844 43 H 0.141 0.859 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.301 -19.067 12.077 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.045 3.955 10 N -0.264 5.264 11 C -0.076 4.076 12 C 0.004 3.996 13 N -0.364 5.364 14 C 0.408 3.592 15 O -0.506 6.506 16 N -0.386 5.386 17 C 0.096 3.904 18 H 0.106 0.894 19 C -0.154 4.154 20 C -0.111 4.111 21 C -0.063 4.063 22 C -0.163 4.163 23 C 0.067 3.933 24 F -0.125 7.125 25 C -0.185 4.185 26 C -0.089 4.089 27 C -0.131 4.131 28 C 0.020 3.980 29 C -0.087 4.087 30 H 0.075 0.925 31 H 0.003 0.997 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.247 0.753 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.173 0.827 43 H 0.159 0.841 44 H 0.131 0.869 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 15.750 -19.333 11.425 27.429 hybrid contribution -0.169 1.138 -0.043 1.151 sum 15.581 -18.195 11.382 26.522 Atomic orbital electron populations 1.70032 1.07961 1.28018 1.52562 1.25767 0.95525 1.02861 0.94547 0.85789 0.79284 0.79154 0.79129 1.19207 1.20927 1.17821 1.21217 0.90747 0.93399 1.49679 0.93604 1.19935 0.94490 0.86123 0.94979 1.61793 1.12323 1.17121 1.35175 1.22318 1.01410 0.93928 0.89980 1.21793 0.80532 0.95610 1.01696 1.47411 1.09664 1.47626 1.31745 1.15963 0.83956 0.78681 0.80570 1.90872 1.19457 1.68913 1.71359 1.45316 1.13470 1.55058 1.24736 1.20461 0.93448 0.86212 0.90305 0.89442 1.22665 1.02823 0.97981 0.91920 1.21141 1.04049 0.92974 0.92898 1.20653 0.96498 0.91857 0.97265 1.20736 1.04098 0.96015 0.95487 1.17698 1.03737 0.77134 0.94693 1.91482 1.93803 1.31584 1.95611 1.21162 1.04809 0.93046 0.99443 1.20538 0.97157 0.94189 0.97006 1.21175 1.01387 0.97221 0.93356 1.21495 1.00172 0.89034 0.87290 1.22522 0.88053 0.97013 1.01130 0.92476 0.99704 0.95292 0.95641 0.90407 0.90566 0.87576 0.75292 0.87609 0.88683 0.87659 0.87754 0.82667 0.84117 0.86852 0.90740 0.88997 0.89149 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.12 13.96 21.45 0.30 -56.82 16 2 C 0.01 0.60 5.47 84.65 0.46 1.06 16 3 Si 0.94 42.75 27.47 68.60 1.88 44.63 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.51 -28.08 8.96 25.60 0.23 -27.85 16 8 H 0.05 2.77 7.37 -2.91 -0.02 2.75 16 9 C 0.17 7.83 3.79 85.55 0.32 8.15 16 10 N -0.54 -20.66 4.62 -899.83 -4.16 -24.82 16 11 C 0.05 1.76 5.46 86.38 0.47 2.24 16 12 C 0.13 3.18 6.59 86.35 0.57 3.75 16 13 N -0.63 -16.87 3.01 -835.94 -2.52 -19.39 16 14 C 0.71 18.98 7.84 179.06 1.40 20.39 16 15 O -0.62 -20.76 14.65 -4.00 -0.06 -20.82 16 16 N -0.73 -14.12 5.03 -458.19 -2.30 -16.43 16 17 C 0.20 3.41 3.13 44.92 0.14 3.55 16 18 H 0.09 1.80 7.72 -2.39 -0.02 1.78 16 19 C -0.12 -1.01 6.75 31.51 0.21 -0.80 16 20 C -0.07 -0.56 6.77 30.52 0.21 -0.36 16 21 C -0.06 -0.92 6.14 -19.60 -0.12 -1.04 16 22 C -0.14 -2.27 10.02 22.34 0.22 -2.04 16 23 C 0.09 1.70 7.30 22.35 0.16 1.87 16 24 F -0.15 -3.04 17.27 44.97 0.78 -2.26 16 25 C -0.17 -3.46 10.03 22.28 0.22 -3.24 16 26 C -0.07 -1.60 9.83 22.30 0.22 -1.38 16 27 C -0.13 -2.50 5.78 -19.58 -0.11 -2.61 16 28 C 0.14 4.03 6.58 86.35 0.57 4.60 16 29 C 0.04 1.32 5.62 86.38 0.49 1.80 16 30 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 31 H -0.01 -0.68 7.18 -2.39 -0.02 -0.70 16 32 H 0.03 1.31 7.40 -2.39 -0.02 1.29 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 2.99 6.67 -2.39 -0.02 2.98 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.11 1.88 5.63 -2.39 -0.01 1.87 16 37 H 0.41 6.11 5.88 -92.71 -0.55 5.57 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.64 7.80 -2.39 -0.02 0.62 16 40 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.11 3.02 6.81 -2.91 -0.02 3.00 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 46 H 0.09 2.58 7.10 -2.39 -0.02 2.56 16 47 H 0.09 2.67 7.99 -2.39 -0.02 2.65 16 48 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -70.90 381.80 -0.02 -70.91 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.39 Total: 16.89 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.67 Total: 8.10 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -8.68 Total: -117.46 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.06 Total: -20.82 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.63 kcal Total: -70.90 -0.02 -70.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601562460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.278 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds