Wall clock time and date at job start Wed Apr 1 2020 04:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99997 * 2 1 4 4 H 1.48501 * 109.46956 * 269.99248 * 3 2 1 5 5 H 1.48500 * 109.47623 * 29.99441 * 3 2 1 6 6 H 1.48501 * 109.47328 * 149.99625 * 3 2 1 7 7 C 1.37874 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00108 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00199 * 180.02562 * 7 2 1 10 10 N 1.46891 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00185 * 170.00168 * 10 9 7 12 12 C 1.53247 * 109.34047 * 187.25042 * 11 10 9 13 13 N 1.47074 * 108.52031 * 306.16711 * 12 11 10 14 14 C 1.34782 * 120.88079 * 231.18934 * 13 12 11 15 15 O 1.21588 * 119.99707 * 184.99888 * 14 13 12 16 16 N 1.34777 * 119.99772 * 4.99394 * 14 13 12 17 17 C 1.46491 * 119.99749 * 174.91442 * 16 14 13 18 18 H 1.09005 * 115.56449 * 350.68718 * 17 16 14 19 19 C 1.52996 * 117.50260 * 136.37717 * 17 16 14 20 20 C 1.52999 * 117.49925 * 205.00144 * 17 16 14 21 21 H 1.08997 * 117.49891 * 359.97438 * 20 17 16 22 22 C 1.50702 * 117.50190 * 145.01765 * 20 17 16 23 23 C 1.38268 * 119.98558 * 59.74025 * 22 20 17 24 24 C 1.38222 * 120.05149 * 179.76787 * 23 22 20 25 25 C 1.38225 * 120.02305 * 0.50715 * 24 23 22 26 26 C 1.38432 * 119.97215 * 359.74153 * 25 24 23 27 27 F 1.35099 * 120.02330 * 179.97438 * 26 25 24 28 28 C 1.38169 * 119.98739 * 240.00852 * 22 20 17 29 29 C 1.47082 * 118.23756 * 51.45691 * 13 12 11 30 30 C 1.46903 * 110.99869 * 294.29901 * 10 9 7 31 31 H 0.96999 * 119.99580 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.46952 * 60.00179 * 9 7 2 33 33 H 1.09006 * 109.46550 * 300.00096 * 9 7 2 34 34 H 1.08990 * 109.49461 * 67.28767 * 11 10 9 35 35 H 1.08997 * 109.48862 * 307.20543 * 11 10 9 36 36 H 1.09000 * 109.62166 * 186.45421 * 12 11 10 37 37 H 1.08998 * 109.78505 * 65.97474 * 12 11 10 38 38 H 0.97000 * 120.00100 * 354.90629 * 16 14 13 39 39 H 1.09001 * 117.49680 * 359.97438 * 19 17 16 40 40 H 1.08998 * 117.52252 * 214.97083 * 19 17 16 41 41 H 1.08006 * 119.97640 * 0.02562 * 23 22 20 42 42 H 1.07997 * 119.99226 * 180.25469 * 24 23 22 43 43 H 1.07999 * 120.01155 * 179.72488 * 25 24 23 44 44 H 1.08003 * 120.01246 * 0.02562 * 28 22 20 45 45 H 1.09003 * 109.62395 * 68.25648 * 29 13 12 46 46 H 1.08999 * 109.62502 * 188.83096 * 29 13 12 47 47 H 1.09001 * 109.49180 * 292.70698 * 30 10 9 48 48 H 1.08996 * 109.49563 * 52.78910 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5790 0.0010 11 6 5.4501 -2.6252 -0.2366 12 6 5.8898 -4.0830 -0.4094 13 7 5.4258 -4.8522 0.7551 14 6 6.2757 -5.6321 1.4522 15 8 5.8577 -6.3309 2.3552 16 7 7.5887 -5.6375 1.1484 17 6 8.5288 -6.3980 1.9753 18 1 8.1204 -6.8009 2.9022 19 6 9.5944 -7.2258 1.2543 20 6 9.9891 -5.9416 1.9864 21 1 10.2504 -5.0758 1.3780 22 6 10.7528 -6.0836 3.2778 23 6 10.9117 -7.3308 3.8532 24 6 11.6160 -7.4632 5.0351 25 6 12.1534 -6.3472 5.6487 26 6 11.9905 -5.0974 5.0761 27 9 12.5149 -4.0059 5.6752 28 6 11.2892 -4.9667 3.8892 29 6 4.0084 -4.7524 1.1351 30 6 3.6440 -3.2637 1.2507 31 1 -0.4849 0.8401 -0.0004 32 1 3.8745 -0.6801 0.8911 33 1 3.8752 -0.6804 -0.8889 34 1 5.9722 -2.1861 0.6135 35 1 5.6885 -2.0638 -1.1399 36 1 6.9769 -4.1325 -0.4715 37 1 5.4521 -4.4951 -1.3186 38 1 7.9112 -5.1379 0.3820 39 1 9.5957 -7.2049 0.1645 40 1 9.8874 -8.1733 1.7064 41 1 10.4887 -8.2028 3.3766 42 1 11.7430 -8.4383 5.4815 43 1 12.6998 -6.4503 6.5745 44 1 11.1609 -3.9920 3.4420 45 1 3.3906 -5.2256 0.3719 46 1 3.8511 -5.2448 2.0947 47 1 4.1914 -2.8158 2.0801 48 1 2.5728 -3.1654 1.4260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601566523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:08 Heat of formation + Delta-G solvation = 2.115066 kcal Electronic energy + Delta-G solvation = -29497.234667 eV Core-core repulsion = 25275.019298 eV Total energy + Delta-G solvation = -4222.215369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.23152 -40.59720 -39.80010 -38.03055 -37.07312 -34.57525 -33.37140 -32.35286 -31.38728 -30.78446 -30.25255 -28.63342 -25.76438 -24.47511 -23.63977 -23.18307 -22.51822 -21.73030 -20.97857 -20.68360 -19.51272 -18.17191 -17.61989 -17.08620 -16.79580 -16.55496 -16.35956 -15.92679 -15.48807 -15.24191 -15.02693 -14.63872 -14.54696 -14.24197 -14.09151 -13.87166 -13.68018 -13.54433 -13.23409 -13.01927 -12.95603 -12.51807 -12.47513 -12.21320 -12.15813 -11.72014 -11.57442 -11.40863 -11.29383 -10.99598 -10.97907 -10.82067 -10.58336 -10.41870 -10.08792 -9.93637 -9.48731 -9.36235 -9.17488 -8.83711 -8.62434 -8.42641 -7.50499 -6.10516 -4.08669 0.70033 0.78327 2.47885 2.93292 3.18921 3.23936 3.32120 3.32981 3.59356 3.73589 3.85673 4.19682 4.33388 4.34646 4.36713 4.49176 4.57311 4.61462 4.67128 4.76839 4.99489 5.04201 5.17176 5.22863 5.26663 5.30427 5.38722 5.47632 5.55537 5.58151 5.64935 5.70955 5.72155 5.83510 5.89368 5.93127 6.02920 6.06785 6.27904 6.32611 6.46089 6.47102 6.54674 6.76668 6.89276 6.93575 7.49616 7.74972 7.87988 7.91657 8.53979 8.57659 8.97152 9.50584 11.02313 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.002034 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.125669 B =13759.964186 C =14883.655351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.525 5.525 11 C 0.038 3.962 12 C 0.119 3.881 13 N -0.624 5.624 14 C 0.711 3.289 15 O -0.590 6.590 16 N -0.722 5.722 17 C 0.127 3.873 18 H 0.141 0.859 19 C -0.184 4.184 20 C -0.134 4.134 21 H 0.118 0.882 22 C -0.017 4.017 23 C -0.131 4.131 24 C -0.086 4.086 25 C -0.160 4.160 26 C 0.101 3.899 27 F -0.140 7.140 28 C -0.147 4.147 29 C 0.134 3.866 30 C 0.049 3.951 31 H 0.264 0.736 32 H -0.011 1.011 33 H 0.025 0.975 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.397 0.603 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.025 0.975 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.138 -14.971 4.462 30.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.092 4.092 12 C -0.005 4.005 13 N -0.361 5.361 14 C 0.413 3.587 15 O -0.469 6.469 16 N -0.377 5.377 17 C 0.019 3.981 18 H 0.159 0.841 19 C -0.223 4.223 20 C -0.154 4.154 21 H 0.136 0.864 22 C -0.018 4.018 23 C -0.149 4.149 24 C -0.104 4.104 25 C -0.179 4.179 26 C 0.082 3.918 27 F -0.118 7.118 28 C -0.166 4.166 29 C 0.011 3.989 30 C -0.079 4.079 31 H 0.074 0.926 32 H 0.006 0.994 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.234 0.766 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.044 0.956 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 25.394 -15.523 4.770 30.143 hybrid contribution 1.196 2.089 0.250 2.421 sum 26.591 -13.434 5.020 30.211 Atomic orbital electron populations 1.69890 1.06103 1.26913 1.50736 1.24900 0.94749 0.98863 0.94785 0.86867 0.80264 0.84065 0.78555 1.20135 1.21166 1.19376 1.21002 0.88565 0.94789 1.50666 0.89994 1.20177 0.97247 0.83750 0.95144 1.61901 1.09597 1.19237 1.34271 1.22432 0.91055 0.94878 1.00852 1.21754 0.97711 0.92154 0.88883 1.47432 1.10227 1.47159 1.31256 1.15741 0.80546 0.80432 0.81960 1.90899 1.76647 1.45392 1.33928 1.44653 1.05664 1.54437 1.32952 1.21516 0.83222 0.96485 0.96875 0.84137 1.23691 1.03078 0.95130 1.00354 1.21609 0.97372 1.00186 0.96219 0.86358 1.18862 0.95961 0.92538 0.94432 1.21168 1.00110 0.97351 0.96269 1.21001 0.96130 0.98367 0.94878 1.21174 1.03521 0.91358 1.01835 1.17678 0.97701 0.83240 0.93160 1.91513 1.84526 1.52816 1.82987 1.20957 1.00207 1.00100 0.95312 1.21864 0.78267 0.97169 1.01607 1.22505 1.03050 0.91963 0.90427 0.92590 0.99360 0.95667 0.95428 0.90049 0.91304 0.90331 0.76582 0.87773 0.87366 0.84948 0.84818 0.84769 0.84668 0.90802 0.89113 0.95629 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.51 -14.03 8.96 -34.44 -0.31 -14.34 16 8 H 0.08 2.43 7.37 -52.49 -0.39 2.05 16 9 C 0.16 3.77 3.79 -4.98 -0.02 3.76 16 10 N -0.53 -10.25 4.62 -235.47 -1.09 -11.34 16 11 C 0.04 0.57 5.62 -3.70 -0.02 0.55 16 12 C 0.12 1.43 6.59 -3.60 -0.02 1.41 16 13 N -0.62 -8.96 3.00 -177.91 -0.53 -9.50 16 14 C 0.71 10.37 8.31 -86.91 -0.72 9.65 16 15 O -0.59 -10.68 15.41 5.29 0.08 -10.60 16 16 N -0.72 -7.54 5.48 -58.68 -0.32 -7.87 16 17 C 0.13 1.15 6.05 -67.94 -0.41 0.74 16 18 H 0.14 1.56 7.43 -51.93 -0.39 1.17 16 19 C -0.18 -1.15 9.78 -26.73 -0.26 -1.41 16 20 C -0.13 -0.95 5.97 -91.77 -0.55 -1.49 16 21 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.02 -0.14 5.61 -104.64 -0.59 -0.72 16 23 C -0.13 -0.90 9.29 -39.58 -0.37 -1.27 16 24 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 25 C -0.16 -1.19 10.03 -39.51 -0.40 -1.59 16 26 C 0.10 0.93 7.30 -39.42 -0.29 0.64 16 27 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 28 C -0.15 -1.27 9.72 -39.52 -0.38 -1.66 16 29 C 0.13 2.14 6.61 -3.36 -0.02 2.12 16 30 C 0.05 0.92 5.47 -3.46 -0.02 0.90 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 33 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 1.13 7.99 -51.93 -0.41 0.72 16 36 H 0.07 0.59 5.63 -51.93 -0.29 0.29 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 3.18 6.32 -40.82 -0.26 2.92 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.11 0.55 6.18 -51.93 -0.32 0.23 16 41 H 0.13 0.68 6.03 -52.48 -0.32 0.36 16 42 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.09 1.48 7.09 -51.93 -0.37 1.11 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.10 2.13 6.67 -51.93 -0.35 1.79 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -33.19 389.20 -11.55 -44.73 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.82 Total: 1.74 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -4.87 Total: -1.82 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -1.17 Total: -54.87 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.19 -11.55 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601566523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.850 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds