Wall clock time and date at job start Wed Apr 1 2020 04:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99997 * 2 1 4 4 H 1.48501 * 109.46956 * 269.99248 * 3 2 1 5 5 H 1.48500 * 109.47623 * 29.99441 * 3 2 1 6 6 H 1.48501 * 109.47328 * 149.99625 * 3 2 1 7 7 C 1.37874 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00108 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00199 * 180.02562 * 7 2 1 10 10 N 1.46891 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00185 * 170.00168 * 10 9 7 12 12 C 1.53247 * 109.34047 * 187.25042 * 11 10 9 13 13 N 1.47074 * 108.52031 * 306.16711 * 12 11 10 14 14 C 1.34782 * 120.88079 * 231.18934 * 13 12 11 15 15 O 1.21588 * 119.99707 * 184.99888 * 14 13 12 16 16 N 1.34777 * 119.99772 * 4.99394 * 14 13 12 17 17 C 1.46491 * 119.99749 * 174.91442 * 16 14 13 18 18 H 1.09005 * 115.56449 * 350.68718 * 17 16 14 19 19 C 1.52996 * 117.50260 * 136.37717 * 17 16 14 20 20 C 1.52999 * 117.49925 * 205.00144 * 17 16 14 21 21 H 1.08997 * 117.49891 * 359.97438 * 20 17 16 22 22 C 1.50702 * 117.50190 * 145.01765 * 20 17 16 23 23 C 1.38268 * 119.98558 * 59.74025 * 22 20 17 24 24 C 1.38222 * 120.05149 * 179.76787 * 23 22 20 25 25 C 1.38225 * 120.02305 * 0.50715 * 24 23 22 26 26 C 1.38432 * 119.97215 * 359.74153 * 25 24 23 27 27 F 1.35099 * 120.02330 * 179.97438 * 26 25 24 28 28 C 1.38169 * 119.98739 * 240.00852 * 22 20 17 29 29 C 1.47082 * 118.23756 * 51.45691 * 13 12 11 30 30 C 1.46903 * 110.99869 * 294.29901 * 10 9 7 31 31 H 0.96999 * 119.99580 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.46952 * 60.00179 * 9 7 2 33 33 H 1.09006 * 109.46550 * 300.00096 * 9 7 2 34 34 H 1.08990 * 109.49461 * 67.28767 * 11 10 9 35 35 H 1.08997 * 109.48862 * 307.20543 * 11 10 9 36 36 H 1.09000 * 109.62166 * 186.45421 * 12 11 10 37 37 H 1.08998 * 109.78505 * 65.97474 * 12 11 10 38 38 H 0.97000 * 120.00100 * 354.90629 * 16 14 13 39 39 H 1.09001 * 117.49680 * 359.97438 * 19 17 16 40 40 H 1.08998 * 117.52252 * 214.97083 * 19 17 16 41 41 H 1.08006 * 119.97640 * 0.02562 * 23 22 20 42 42 H 1.07997 * 119.99226 * 180.25469 * 24 23 22 43 43 H 1.07999 * 120.01155 * 179.72488 * 25 24 23 44 44 H 1.08003 * 120.01246 * 0.02562 * 28 22 20 45 45 H 1.09003 * 109.62395 * 68.25648 * 29 13 12 46 46 H 1.08999 * 109.62502 * 188.83096 * 29 13 12 47 47 H 1.09001 * 109.49180 * 292.70698 * 30 10 9 48 48 H 1.08996 * 109.49563 * 52.78910 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5790 0.0010 11 6 5.4501 -2.6252 -0.2366 12 6 5.8898 -4.0830 -0.4094 13 7 5.4258 -4.8522 0.7551 14 6 6.2757 -5.6321 1.4522 15 8 5.8577 -6.3309 2.3552 16 7 7.5887 -5.6375 1.1484 17 6 8.5288 -6.3980 1.9753 18 1 8.1204 -6.8009 2.9022 19 6 9.5944 -7.2258 1.2543 20 6 9.9891 -5.9416 1.9864 21 1 10.2504 -5.0758 1.3780 22 6 10.7528 -6.0836 3.2778 23 6 10.9117 -7.3308 3.8532 24 6 11.6160 -7.4632 5.0351 25 6 12.1534 -6.3472 5.6487 26 6 11.9905 -5.0974 5.0761 27 9 12.5149 -4.0059 5.6752 28 6 11.2892 -4.9667 3.8892 29 6 4.0084 -4.7524 1.1351 30 6 3.6440 -3.2637 1.2507 31 1 -0.4849 0.8401 -0.0004 32 1 3.8745 -0.6801 0.8911 33 1 3.8752 -0.6804 -0.8889 34 1 5.9722 -2.1861 0.6135 35 1 5.6885 -2.0638 -1.1399 36 1 6.9769 -4.1325 -0.4715 37 1 5.4521 -4.4951 -1.3186 38 1 7.9112 -5.1379 0.3820 39 1 9.5957 -7.2049 0.1645 40 1 9.8874 -8.1733 1.7064 41 1 10.4887 -8.2028 3.3766 42 1 11.7430 -8.4383 5.4815 43 1 12.6998 -6.4503 6.5745 44 1 11.1609 -3.9920 3.4420 45 1 3.3906 -5.2256 0.3719 46 1 3.8511 -5.2448 2.0947 47 1 4.1914 -2.8158 2.0801 48 1 2.5728 -3.1654 1.4260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601566523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:07 Heat of formation + Delta-G solvation = -19.234164 kcal Electronic energy + Delta-G solvation = -29498.160439 eV Core-core repulsion = 25275.019298 eV Total energy + Delta-G solvation = -4223.141141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.93330 -41.58834 -40.51261 -39.20940 -37.92113 -36.01617 -34.59809 -34.06918 -32.11191 -31.82401 -30.97726 -30.27692 -27.31513 -25.08965 -24.79188 -23.92755 -23.60658 -22.99640 -21.98910 -21.57735 -20.64315 -19.29424 -18.86697 -18.28223 -17.82249 -17.18100 -17.10979 -16.69843 -16.61672 -16.54158 -16.15425 -16.04969 -15.77740 -15.39224 -15.21204 -15.04504 -14.67804 -14.54132 -14.39972 -14.33289 -13.79175 -13.56286 -13.47556 -13.25310 -13.00362 -12.86365 -12.72064 -12.51190 -12.36195 -12.30864 -12.22996 -11.96533 -11.93340 -11.86651 -11.56207 -11.46423 -11.23747 -10.77472 -10.22587 -9.85963 -9.70164 -9.35539 -9.05001 -8.27671 -6.31194 0.12529 0.21658 1.34945 1.36944 1.46575 1.48857 1.98689 2.34387 2.50048 2.75442 3.04119 3.06322 3.14984 3.25023 3.63750 3.72545 3.82981 3.92216 3.96988 4.03274 4.08937 4.11253 4.14796 4.23436 4.25016 4.41266 4.46054 4.50234 4.69778 4.73003 4.81901 4.84734 4.86854 4.94659 4.96038 5.01326 5.05864 5.11282 5.12176 5.15513 5.37319 5.39662 5.48734 5.52360 5.55479 5.84020 5.92204 6.00264 6.27342 6.61625 6.75553 6.88834 7.32308 7.46891 8.88623 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.002034 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.125669 B =13759.964186 C =14883.655351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.007 3.993 3 Si 0.947 3.053 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.041 0.959 9 C 0.172 3.828 10 N -0.537 5.537 11 C 0.034 3.966 12 C 0.123 3.877 13 N -0.627 5.627 14 C 0.708 3.292 15 O -0.632 6.632 16 N -0.704 5.704 17 C 0.097 3.903 18 H 0.116 0.884 19 C -0.159 4.159 20 C -0.121 4.121 21 H 0.131 0.869 22 C -0.029 4.029 23 C -0.132 4.132 24 C -0.085 4.085 25 C -0.164 4.164 26 C 0.074 3.926 27 F -0.153 7.153 28 C -0.160 4.160 29 C 0.146 3.854 30 C 0.058 3.942 31 H 0.266 0.734 32 H -0.017 1.017 33 H 0.037 0.963 34 H 0.027 0.973 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.411 0.589 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.152 0.848 42 H 0.162 0.838 43 H 0.148 0.852 44 H 0.137 0.863 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.018 0.982 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.613 -15.563 3.229 33.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.554 4.554 8 H 0.059 0.941 9 C 0.045 3.955 10 N -0.262 5.262 11 C -0.094 4.094 12 C 0.001 3.999 13 N -0.364 5.364 14 C 0.410 3.590 15 O -0.513 6.513 16 N -0.360 5.360 17 C -0.010 4.010 18 H 0.134 0.866 19 C -0.197 4.197 20 C -0.141 4.141 21 H 0.149 0.851 22 C -0.030 4.030 23 C -0.150 4.150 24 C -0.103 4.103 25 C -0.183 4.183 26 C 0.055 3.945 27 F -0.132 7.132 28 C -0.178 4.178 29 C 0.022 3.978 30 C -0.072 4.072 31 H 0.075 0.925 32 H 0.000 1.000 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.251 0.749 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.170 0.830 42 H 0.179 0.821 43 H 0.166 0.834 44 H 0.155 0.845 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.036 0.964 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 28.943 -16.127 3.505 33.317 hybrid contribution 0.122 2.144 0.675 2.252 sum 29.064 -13.983 4.180 32.523 Atomic orbital electron populations 1.70052 1.08120 1.28060 1.52546 1.25850 0.95597 1.03149 0.94473 0.85715 0.79173 0.78681 0.79329 1.18620 1.21158 1.17744 1.21261 0.91069 0.93311 1.49801 0.94089 1.19939 0.94303 0.86109 0.95128 1.61801 1.13002 1.16992 1.34416 1.22612 0.87771 0.97458 1.01607 1.21904 1.00355 0.89605 0.88065 1.47401 1.09389 1.47583 1.31981 1.15891 0.81656 0.80064 0.81400 1.90871 1.77621 1.47110 1.35706 1.44457 1.04159 1.54164 1.33212 1.21536 0.83788 0.98742 0.96916 0.86599 1.23805 0.99457 0.95249 1.01189 1.21616 0.95015 1.01337 0.96108 0.85096 1.19036 0.96245 0.92728 0.94980 1.21489 0.99525 0.97647 0.96339 1.21362 0.95150 0.99203 0.94593 1.21447 1.03434 0.91055 1.02365 1.17993 0.98932 0.83598 0.93948 1.91472 1.84891 1.53552 1.83278 1.21095 1.00601 1.00678 0.95474 1.21541 0.79906 0.94861 1.01457 1.22339 1.00981 0.93757 0.90088 0.92485 0.99956 0.94480 0.95492 0.88140 0.86925 0.89493 0.74911 0.86099 0.85982 0.83044 0.82077 0.83391 0.84527 0.90689 0.89803 0.96422 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.01 0.38 5.47 84.65 0.46 0.85 16 3 Si 0.95 43.23 27.47 68.60 1.88 45.12 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.52 -29.11 8.96 25.60 0.23 -28.88 16 8 H 0.04 2.58 7.37 -2.91 -0.02 2.56 16 9 C 0.17 7.90 3.79 85.56 0.32 8.23 16 10 N -0.54 -20.73 4.62 -898.89 -4.15 -24.88 16 11 C 0.03 0.95 5.62 86.39 0.49 1.43 16 12 C 0.12 2.58 6.59 86.35 0.57 3.14 16 13 N -0.63 -17.12 3.00 -835.03 -2.51 -19.62 16 14 C 0.71 19.72 8.31 179.05 1.49 21.21 16 15 O -0.63 -22.88 15.41 -3.99 -0.06 -22.94 16 16 N -0.70 -12.91 5.48 -457.83 -2.51 -15.42 16 17 C 0.10 1.56 6.05 44.99 0.27 1.84 16 18 H 0.12 2.50 7.43 -2.38 -0.02 2.49 16 19 C -0.16 -1.41 9.78 30.59 0.30 -1.11 16 20 C -0.12 -1.37 5.97 -11.54 -0.07 -1.44 16 21 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 22 C -0.03 -0.41 5.61 -19.87 -0.11 -0.52 16 23 C -0.13 -1.50 9.29 22.27 0.21 -1.29 16 24 C -0.09 -0.90 10.04 22.26 0.22 -0.67 16 25 C -0.16 -2.25 10.03 22.31 0.22 -2.03 16 26 C 0.07 1.33 7.30 22.37 0.16 1.50 16 27 F -0.15 -3.19 17.27 44.97 0.78 -2.42 16 28 C -0.16 -2.65 9.72 22.31 0.22 -2.43 16 29 C 0.15 4.74 6.61 86.50 0.57 5.31 16 30 C 0.06 2.20 5.47 86.54 0.47 2.68 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H -0.02 -0.81 7.18 -2.39 -0.02 -0.83 16 33 H 0.04 1.63 7.40 -2.38 -0.02 1.61 16 34 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 2.43 7.99 -2.39 -0.02 2.41 16 36 H 0.11 1.38 5.63 -2.39 -0.01 1.36 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.41 4.94 6.32 -92.71 -0.59 4.35 16 39 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.12 0.76 6.18 -2.39 -0.01 0.75 16 41 H 0.15 1.06 6.03 -2.91 -0.02 1.04 16 42 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.08 2.84 7.09 -2.39 -0.02 2.82 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.07 3.15 6.67 -2.39 -0.02 3.14 16 Total: -1.00 -75.89 389.20 0.11 -75.78 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.35 Total: 14.93 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.03 Total: 7.81 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -8.87 Total: -118.28 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.06 Total: -22.94 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.12 kcal Total: -75.89 0.11 -75.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601566523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.548 kcal (2) G-P(sol) polarization free energy of solvation -75.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds