Wall clock time and date at job start Wed Apr 1 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99971 * 2 1 4 4 H 1.48503 * 109.47263 * 269.99954 * 3 2 1 5 5 H 1.48506 * 109.47222 * 30.00311 * 3 2 1 6 6 H 1.48501 * 109.47103 * 149.99925 * 3 2 1 7 7 C 1.37875 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99640 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00103 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.46971 * 175.25086 * 9 7 2 11 11 C 1.46903 * 110.99810 * 295.37859 * 10 9 7 12 12 C 1.53242 * 109.33897 * 187.25641 * 11 10 9 13 13 N 1.47077 * 108.52094 * 306.16676 * 12 11 10 14 14 C 1.34776 * 120.88238 * 231.18878 * 13 12 11 15 15 O 1.21589 * 120.00010 * 184.98006 * 14 13 12 16 16 N 1.34770 * 120.00121 * 4.97385 * 14 13 12 17 17 C 1.46498 * 120.00318 * 174.88054 * 16 14 13 18 18 H 1.09007 * 110.26858 * 324.38449 * 17 16 14 19 19 C 1.54597 * 110.28801 * 202.21358 * 17 16 14 20 20 C 1.54339 * 102.27492 * 214.71265 * 19 17 16 21 21 C 1.51381 * 105.25997 * 26.37240 * 20 19 17 22 22 C 1.38516 * 130.35878 * 162.78095 * 21 20 19 23 23 C 1.38065 * 120.24605 * 179.97438 * 22 21 20 24 24 C 1.38476 * 119.91096 * 359.97438 * 23 22 21 25 25 F 1.35094 * 120.05788 * 179.97438 * 24 23 22 26 26 C 1.38322 * 119.88035 * 0.02562 * 24 23 22 27 27 C 1.38231 * 109.74785 * 342.75862 * 21 20 19 28 28 C 1.47086 * 118.23539 * 51.46207 * 13 12 11 29 29 C 1.46900 * 111.00275 * 59.67784 * 10 9 7 30 30 H 0.97011 * 119.99947 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46839 * 55.25159 * 9 7 2 32 32 H 1.09001 * 109.46776 * 295.24677 * 9 7 2 33 33 H 1.09000 * 109.49498 * 67.29725 * 11 10 9 34 34 H 1.08997 * 109.49457 * 307.21464 * 11 10 9 35 35 H 1.09003 * 109.62592 * 186.46194 * 12 11 10 36 36 H 1.08998 * 109.62817 * 65.88053 * 12 11 10 37 37 H 0.97005 * 120.00125 * 354.88175 * 16 14 13 38 38 H 1.08995 * 110.90641 * 96.50827 * 19 17 16 39 39 H 1.09000 * 110.85143 * 332.88161 * 19 17 16 40 40 H 1.09000 * 110.30330 * 267.39818 * 20 19 17 41 41 H 1.09000 * 110.30587 * 145.34868 * 20 19 17 42 42 H 1.07996 * 119.87560 * 359.97438 * 22 21 20 43 43 H 1.08008 * 120.04183 * 179.97438 * 23 22 21 44 44 H 1.07993 * 119.90460 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.62959 * 68.25068 * 28 13 12 46 46 H 1.09001 * 109.62368 * 188.83226 * 28 13 12 47 47 H 1.08997 * 109.49326 * 292.70482 * 29 10 9 48 48 H 1.09002 * 109.48641 * 52.76237 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5742 0.1154 11 6 3.6229 -3.1606 1.4081 12 6 4.3018 -4.5256 1.5642 13 7 3.9745 -5.3472 0.3891 14 6 3.4827 -6.5939 0.5319 15 8 3.3029 -7.2924 -0.4470 16 7 3.1904 -7.0664 1.7597 17 6 2.5521 -8.3767 1.9076 18 1 1.8506 -8.5493 1.0913 19 6 1.8266 -8.4689 3.2697 20 6 2.0277 -9.9514 3.6489 21 6 3.2972 -10.3749 2.9414 22 6 4.1227 -11.4663 3.1566 23 6 5.2454 -11.6538 2.3753 24 6 5.5479 -10.7482 1.3723 25 9 6.6460 -10.9286 0.6063 26 6 4.7241 -9.6581 1.1567 27 6 3.5984 -9.4700 1.9408 28 6 4.2040 -4.7746 -0.9461 29 6 3.5234 -3.3976 -1.0034 30 1 -0.4850 0.8401 0.0004 31 1 3.8751 -0.6078 0.8438 32 1 3.8744 -0.7563 -0.9300 33 1 2.5409 -3.2858 1.4480 34 1 3.9431 -2.5008 2.2144 35 1 3.9359 -5.0153 2.4667 36 1 5.3816 -4.3922 1.6286 37 1 3.4027 -6.5390 2.5457 38 1 0.7671 -8.2366 3.1625 39 1 2.2955 -7.8141 4.0041 40 1 1.1843 -10.5483 3.3019 41 1 2.1440 -10.0534 4.7278 42 1 3.8871 -12.1731 3.9384 43 1 5.8870 -12.5057 2.5462 44 1 4.9598 -8.9514 0.3749 45 1 5.2746 -4.6647 -1.1184 46 1 3.7735 -5.4290 -1.7041 47 1 2.4428 -3.5196 -0.9298 48 1 3.7712 -2.9094 -1.9460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601572470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:00 Heat of formation + Delta-G solvation = -26.850208 kcal Electronic energy + Delta-G solvation = -30705.474948 eV Core-core repulsion = 26482.003550 eV Total energy + Delta-G solvation = -4223.471397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.02960 -40.85858 -39.71973 -37.70705 -36.11157 -34.50636 -33.59424 -32.30597 -31.31209 -30.55724 -29.02641 -28.57182 -26.78638 -25.34164 -23.27070 -23.22789 -22.28932 -21.43594 -21.24358 -20.49081 -19.22204 -18.04987 -17.38090 -16.87669 -16.84154 -16.39894 -15.72596 -15.68476 -15.46229 -15.05701 -14.83689 -14.55799 -14.41270 -14.14654 -13.93839 -13.91437 -13.62364 -13.44894 -13.03562 -12.69434 -12.48831 -12.48456 -12.26682 -12.18869 -12.04532 -11.87714 -11.39064 -11.29687 -11.25830 -11.16683 -11.01720 -10.66733 -10.51237 -10.36735 -9.98472 -9.92340 -9.57723 -9.25272 -9.14281 -8.69780 -8.66870 -8.35244 -7.32762 -6.17141 -4.18168 0.87174 0.98538 2.71722 3.22765 3.26708 3.30669 3.32882 3.34839 3.82632 3.94867 4.12743 4.28399 4.33034 4.59577 4.72214 4.72812 4.78538 4.84737 4.95031 5.15109 5.22006 5.31257 5.32272 5.41600 5.43704 5.48212 5.49996 5.63751 5.68032 5.73696 5.83161 5.86390 5.92637 5.93667 5.98186 6.07784 6.25376 6.31670 6.47726 6.56185 6.62477 6.66244 6.71061 6.86306 6.97889 7.05934 7.46145 7.89633 7.95031 8.03664 8.36440 8.69145 8.84579 9.44978 10.95626 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.002387 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.474599 B =11725.059988 C =12535.953461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.153 3.847 10 N -0.533 5.533 11 C 0.048 3.952 12 C 0.116 3.884 13 N -0.622 5.622 14 C 0.708 3.292 15 O -0.593 6.593 16 N -0.742 5.742 17 C 0.203 3.797 18 H 0.106 0.894 19 C -0.125 4.125 20 C -0.077 4.077 21 C -0.106 4.106 22 C -0.084 4.084 23 C -0.151 4.151 24 C 0.092 3.908 25 F -0.140 7.140 26 C -0.117 4.117 27 C -0.077 4.077 28 C 0.134 3.866 29 C 0.048 3.952 30 H 0.264 0.736 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 -20.919 9.818 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.092 0.908 9 C 0.026 3.974 10 N -0.257 5.257 11 C -0.081 4.081 12 C -0.007 4.007 13 N -0.359 5.359 14 C 0.410 3.590 15 O -0.472 6.472 16 N -0.399 5.399 17 C 0.098 3.902 18 H 0.124 0.876 19 C -0.162 4.162 20 C -0.115 4.115 21 C -0.107 4.107 22 C -0.102 4.102 23 C -0.170 4.170 24 C 0.073 3.927 25 F -0.119 7.119 26 C -0.136 4.136 27 C -0.078 4.078 28 C 0.011 3.989 29 C -0.082 4.082 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.235 0.765 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.068 0.932 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.155 -21.262 9.030 24.497 hybrid contribution -0.213 1.243 0.218 1.280 sum 7.942 -20.019 9.248 23.438 Atomic orbital electron populations 1.69932 1.06402 1.27074 1.50161 1.24982 0.94701 0.99270 0.94094 0.86794 0.80349 0.83502 0.78714 1.20145 1.21311 1.18780 1.21679 0.90623 0.94674 1.52244 0.90810 1.20221 0.94676 0.85387 0.97073 1.62402 1.58535 1.03832 1.00899 1.22245 0.98942 0.93360 0.93581 1.21829 1.00355 0.91772 0.86789 1.47346 1.67165 1.13086 1.08307 1.15843 0.78047 0.81625 0.83502 1.90895 1.60776 1.57728 1.37813 1.45337 1.66850 1.20348 1.07381 1.20364 0.91439 0.79492 0.98947 0.87588 1.22663 1.01711 0.96580 0.95293 1.21004 0.94527 0.95484 1.00456 1.20601 0.97158 0.95474 0.97422 1.20393 0.93479 0.96995 0.99316 1.21020 0.99383 1.00121 0.96498 1.17563 0.85603 0.96774 0.92759 1.91500 1.51112 1.95155 1.74109 1.20714 0.94473 0.97436 1.00966 1.20758 0.95169 0.97119 0.94792 1.21807 1.00254 0.94162 0.82683 1.22399 0.98541 0.91809 0.95415 0.92621 0.95051 0.95551 0.93275 0.90473 0.91246 0.91072 0.76546 0.89110 0.89963 0.89512 0.90040 0.85195 0.84702 0.84498 0.91613 0.89300 0.93234 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.76 27.57 -169.99 -4.69 16.08 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -5.93 6.41 56.52 0.36 -5.57 16 7 C -0.55 -14.84 8.32 -34.44 -0.29 -15.13 16 8 H 0.07 2.18 6.12 -52.48 -0.32 1.86 16 9 C 0.15 3.49 4.20 -4.98 -0.02 3.46 16 10 N -0.53 -10.34 4.83 -235.46 -1.14 -11.47 16 11 C 0.05 0.83 5.24 -3.70 -0.02 0.81 16 12 C 0.12 1.56 6.59 -3.60 -0.02 1.53 16 13 N -0.62 -9.53 3.00 -177.90 -0.53 -10.06 16 14 C 0.71 11.02 7.84 -86.92 -0.68 10.34 16 15 O -0.59 -11.05 14.65 5.29 0.08 -10.98 16 16 N -0.74 -8.81 5.03 -58.66 -0.29 -9.10 16 17 C 0.20 2.16 3.14 -67.91 -0.21 1.95 16 18 H 0.11 1.31 7.72 -51.93 -0.40 0.91 16 19 C -0.12 -0.88 6.77 -25.19 -0.17 -1.05 16 20 C -0.08 -0.49 6.76 -26.85 -0.18 -0.67 16 21 C -0.11 -0.93 6.14 -104.19 -0.64 -1.57 16 22 C -0.08 -0.67 10.04 -39.54 -0.40 -1.07 16 23 C -0.15 -1.39 10.03 -39.56 -0.40 -1.79 16 24 C 0.09 1.09 7.30 -39.46 -0.29 0.80 16 25 F -0.14 -1.79 17.27 2.25 0.04 -1.76 16 26 C -0.12 -1.50 9.81 -39.47 -0.39 -1.88 16 27 C -0.08 -0.85 5.78 -104.21 -0.60 -1.45 16 28 C 0.13 2.16 6.61 -3.36 -0.02 2.13 16 29 C 0.05 0.89 5.18 -3.46 -0.02 0.87 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.03 0.72 6.79 -51.93 -0.35 0.37 16 32 H 0.03 0.61 7.81 -51.93 -0.41 0.20 16 33 H 0.05 0.99 7.09 -51.93 -0.37 0.62 16 34 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 35 H 0.07 0.73 5.63 -51.93 -0.29 0.43 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.40 3.88 5.89 -40.82 -0.24 3.64 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.51 7.81 -51.93 -0.41 0.11 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.14 2.04 6.81 -52.49 -0.36 1.68 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 1.48 7.09 -51.93 -0.37 1.11 16 47 H 0.05 1.08 6.63 -51.93 -0.34 0.74 16 48 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -32.51 378.83 -11.33 -43.84 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.83 Total: 4.56 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -4.45 Total: -0.80 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -1.19 Total: -56.66 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.69 Total: 16.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.51 -11.33 -43.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601572470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.989 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds