Wall clock time and date at job start Wed Apr 1 2020 04:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99971 * 2 1 4 4 H 1.48503 * 109.47263 * 269.99954 * 3 2 1 5 5 H 1.48506 * 109.47222 * 30.00311 * 3 2 1 6 6 H 1.48501 * 109.47103 * 149.99925 * 3 2 1 7 7 C 1.37875 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99640 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00103 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.46971 * 175.25086 * 9 7 2 11 11 C 1.46903 * 110.99810 * 295.37859 * 10 9 7 12 12 C 1.53242 * 109.33897 * 187.25641 * 11 10 9 13 13 N 1.47077 * 108.52094 * 306.16676 * 12 11 10 14 14 C 1.34776 * 120.88238 * 231.18878 * 13 12 11 15 15 O 1.21589 * 120.00010 * 184.98006 * 14 13 12 16 16 N 1.34770 * 120.00121 * 4.97385 * 14 13 12 17 17 C 1.46498 * 120.00318 * 174.88054 * 16 14 13 18 18 H 1.09007 * 110.26858 * 324.38449 * 17 16 14 19 19 C 1.54597 * 110.28801 * 202.21358 * 17 16 14 20 20 C 1.54339 * 102.27492 * 214.71265 * 19 17 16 21 21 C 1.51381 * 105.25997 * 26.37240 * 20 19 17 22 22 C 1.38516 * 130.35878 * 162.78095 * 21 20 19 23 23 C 1.38065 * 120.24605 * 179.97438 * 22 21 20 24 24 C 1.38476 * 119.91096 * 359.97438 * 23 22 21 25 25 F 1.35094 * 120.05788 * 179.97438 * 24 23 22 26 26 C 1.38322 * 119.88035 * 0.02562 * 24 23 22 27 27 C 1.38231 * 109.74785 * 342.75862 * 21 20 19 28 28 C 1.47086 * 118.23539 * 51.46207 * 13 12 11 29 29 C 1.46900 * 111.00275 * 59.67784 * 10 9 7 30 30 H 0.97011 * 119.99947 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46839 * 55.25159 * 9 7 2 32 32 H 1.09001 * 109.46776 * 295.24677 * 9 7 2 33 33 H 1.09000 * 109.49498 * 67.29725 * 11 10 9 34 34 H 1.08997 * 109.49457 * 307.21464 * 11 10 9 35 35 H 1.09003 * 109.62592 * 186.46194 * 12 11 10 36 36 H 1.08998 * 109.62817 * 65.88053 * 12 11 10 37 37 H 0.97005 * 120.00125 * 354.88175 * 16 14 13 38 38 H 1.08995 * 110.90641 * 96.50827 * 19 17 16 39 39 H 1.09000 * 110.85143 * 332.88161 * 19 17 16 40 40 H 1.09000 * 110.30330 * 267.39818 * 20 19 17 41 41 H 1.09000 * 110.30587 * 145.34868 * 20 19 17 42 42 H 1.07996 * 119.87560 * 359.97438 * 22 21 20 43 43 H 1.08008 * 120.04183 * 179.97438 * 23 22 21 44 44 H 1.07993 * 119.90460 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.62959 * 68.25068 * 28 13 12 46 46 H 1.09001 * 109.62368 * 188.83226 * 28 13 12 47 47 H 1.08997 * 109.49326 * 292.70482 * 29 10 9 48 48 H 1.09002 * 109.48641 * 52.76237 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5742 0.1154 11 6 3.6229 -3.1606 1.4081 12 6 4.3018 -4.5256 1.5642 13 7 3.9745 -5.3472 0.3891 14 6 3.4827 -6.5939 0.5319 15 8 3.3029 -7.2924 -0.4470 16 7 3.1904 -7.0664 1.7597 17 6 2.5521 -8.3767 1.9076 18 1 1.8506 -8.5493 1.0913 19 6 1.8266 -8.4689 3.2697 20 6 2.0277 -9.9514 3.6489 21 6 3.2972 -10.3749 2.9414 22 6 4.1227 -11.4663 3.1566 23 6 5.2454 -11.6538 2.3753 24 6 5.5479 -10.7482 1.3723 25 9 6.6460 -10.9286 0.6063 26 6 4.7241 -9.6581 1.1567 27 6 3.5984 -9.4700 1.9408 28 6 4.2040 -4.7746 -0.9461 29 6 3.5234 -3.3976 -1.0034 30 1 -0.4850 0.8401 0.0004 31 1 3.8751 -0.6078 0.8438 32 1 3.8744 -0.7563 -0.9300 33 1 2.5409 -3.2858 1.4480 34 1 3.9431 -2.5008 2.2144 35 1 3.9359 -5.0153 2.4667 36 1 5.3816 -4.3922 1.6286 37 1 3.4027 -6.5390 2.5457 38 1 0.7671 -8.2366 3.1625 39 1 2.2955 -7.8141 4.0041 40 1 1.1843 -10.5483 3.3019 41 1 2.1440 -10.0534 4.7278 42 1 3.8871 -12.1731 3.9384 43 1 5.8870 -12.5057 2.5462 44 1 4.9598 -8.9514 0.3749 45 1 5.2746 -4.6647 -1.1184 46 1 3.7735 -5.4290 -1.7041 47 1 2.4428 -3.5196 -0.9298 48 1 3.7712 -2.9094 -1.9460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601572470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:59 Heat of formation + Delta-G solvation = -48.504126 kcal Electronic energy + Delta-G solvation = -30706.413932 eV Core-core repulsion = 26482.003550 eV Total energy + Delta-G solvation = -4224.410382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.94660 -41.83889 -40.76385 -39.12610 -36.97364 -36.03501 -34.66897 -34.19714 -32.26002 -31.79144 -30.36755 -29.61981 -27.84120 -26.82135 -24.59948 -24.04483 -23.85821 -22.44028 -22.06172 -21.75395 -20.55842 -19.32759 -18.78978 -18.27996 -17.79022 -17.34115 -16.74775 -16.60026 -16.57136 -16.41583 -16.11041 -15.92607 -15.83568 -15.57678 -15.19191 -14.93763 -14.53179 -14.44759 -14.39184 -14.13483 -13.80496 -13.66473 -13.40205 -13.07753 -13.05134 -13.00795 -12.65465 -12.52808 -12.47741 -12.25901 -12.18422 -12.04127 -12.02263 -11.78174 -11.73368 -11.63998 -11.22772 -10.80554 -10.31947 -9.97076 -9.63102 -9.44882 -9.02745 -8.32398 -6.38629 0.10459 0.20335 1.37503 1.37913 1.49594 1.59471 2.06395 2.33477 2.54328 2.87012 3.02755 3.08889 3.23611 3.44010 3.56792 3.93327 3.96748 3.97243 4.06905 4.13845 4.14001 4.17992 4.26005 4.33800 4.48757 4.55973 4.62887 4.66471 4.73314 4.79028 4.84605 4.91991 4.99006 5.04700 5.05338 5.07823 5.11721 5.16507 5.18121 5.19117 5.26689 5.42798 5.46899 5.47486 5.57987 5.86007 5.91217 6.07514 6.28208 6.33405 6.68349 6.89713 7.28759 7.48765 8.83979 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.002387 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.474599 B =11725.059988 C =12535.953461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.550 4.550 8 H 0.029 0.971 9 C 0.159 3.841 10 N -0.524 5.524 11 C 0.048 3.952 12 C 0.125 3.875 13 N -0.629 5.629 14 C 0.703 3.297 15 O -0.630 6.630 16 N -0.728 5.728 17 C 0.196 3.804 18 H 0.080 0.920 19 C -0.117 4.117 20 C -0.071 4.071 21 C -0.097 4.097 22 C -0.075 4.075 23 C -0.145 4.145 24 C 0.066 3.934 25 F -0.154 7.154 26 C -0.140 4.140 27 C -0.096 4.096 28 C 0.145 3.855 29 C 0.055 3.945 30 H 0.266 0.734 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.011 0.989 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.409 0.591 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.170 0.830 43 H 0.159 0.841 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.007 0.993 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 -21.753 12.916 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.589 4.589 8 H 0.047 0.953 9 C 0.032 3.968 10 N -0.247 5.247 11 C -0.081 4.081 12 C 0.002 3.998 13 N -0.365 5.365 14 C 0.404 3.596 15 O -0.512 6.512 16 N -0.385 5.385 17 C 0.091 3.909 18 H 0.098 0.902 19 C -0.154 4.154 20 C -0.108 4.108 21 C -0.098 4.098 22 C -0.093 4.093 23 C -0.163 4.163 24 C 0.047 3.953 25 F -0.133 7.133 26 C -0.160 4.160 27 C -0.097 4.097 28 C 0.021 3.979 29 C -0.074 4.074 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.030 0.970 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.248 0.752 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.187 0.813 43 H 0.177 0.823 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.025 0.975 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.749 -22.118 12.172 27.063 hybrid contribution -0.782 1.383 -0.751 1.757 sum 8.968 -20.735 11.421 25.314 Atomic orbital electron populations 1.70096 1.08522 1.28193 1.52183 1.25967 0.95506 1.03606 0.93777 0.85645 0.79680 0.78023 0.79152 1.19517 1.21236 1.16179 1.21895 0.92882 0.92948 1.51146 0.95297 1.20109 0.91603 0.87666 0.97465 1.62439 1.57595 1.02657 1.02042 1.22329 0.97126 0.95843 0.92796 1.21908 1.01237 0.89418 0.87221 1.47411 1.67242 1.13343 1.08541 1.16052 0.77838 0.81489 0.84202 1.90865 1.62176 1.58737 1.39410 1.45261 1.65914 1.20926 1.06408 1.20575 0.91227 0.78698 1.00424 0.90219 1.22709 1.01797 0.97925 0.93016 1.21087 0.93402 0.94470 1.01823 1.20983 0.97848 0.94725 0.96236 1.20839 0.92177 0.96965 0.99308 1.21354 0.99989 0.99813 0.95173 1.17840 0.85641 0.97692 0.94093 1.91455 1.51798 1.95281 1.74740 1.20595 0.96250 0.97866 1.01262 1.20826 0.94891 0.98282 0.95737 1.21613 1.00833 0.92127 0.83338 1.22323 0.96152 0.93433 0.95528 0.92557 0.94083 0.95162 0.97016 0.89003 0.87952 0.88937 0.75161 0.88216 0.88441 0.88148 0.87183 0.81300 0.82296 0.87913 0.89581 0.90358 0.97504 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 2 C 0.01 0.53 5.47 84.65 0.46 0.99 16 3 Si 0.95 42.58 27.57 68.60 1.89 44.47 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.24 -9.66 6.41 99.48 0.64 -9.02 16 7 C -0.55 -30.41 8.32 25.60 0.21 -30.20 16 8 H 0.03 1.82 6.12 -2.91 -0.02 1.80 16 9 C 0.16 7.16 4.20 85.56 0.36 7.52 16 10 N -0.52 -20.21 4.83 -898.87 -4.34 -24.55 16 11 C 0.05 1.64 5.24 86.38 0.45 2.09 16 12 C 0.12 3.15 6.59 86.35 0.57 3.72 16 13 N -0.63 -19.44 3.00 -835.02 -2.51 -21.94 16 14 C 0.70 22.62 7.84 179.06 1.40 24.03 16 15 O -0.63 -25.04 14.65 -4.00 -0.06 -25.09 16 16 N -0.73 -17.21 5.03 -457.76 -2.30 -19.51 16 17 C 0.20 4.13 3.14 45.00 0.14 4.27 16 18 H 0.08 2.09 7.72 -2.38 -0.02 2.07 16 19 C -0.12 -1.36 6.77 31.59 0.21 -1.14 16 20 C -0.07 -0.61 6.76 30.52 0.21 -0.41 16 21 C -0.10 -1.45 6.14 -19.58 -0.12 -1.57 16 22 C -0.08 -0.94 10.04 22.29 0.22 -0.71 16 23 C -0.14 -2.36 10.03 22.29 0.22 -2.14 16 24 C 0.07 1.59 7.30 22.35 0.16 1.75 16 25 F -0.15 -4.12 17.27 44.97 0.78 -3.34 16 26 C -0.14 -3.78 9.81 22.34 0.22 -3.56 16 27 C -0.10 -2.10 5.78 -19.60 -0.11 -2.21 16 28 C 0.14 4.76 6.61 86.50 0.57 5.33 16 29 C 0.06 2.14 5.18 86.54 0.45 2.58 16 30 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 31 H 0.04 1.79 6.79 -2.39 -0.02 1.78 16 32 H 0.03 1.35 7.81 -2.39 -0.02 1.33 16 33 H 0.01 0.48 7.09 -2.39 -0.02 0.46 16 34 H 0.09 2.84 8.06 -2.39 -0.02 2.82 16 35 H 0.10 1.90 5.63 -2.39 -0.01 1.88 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.41 7.37 5.89 -92.70 -0.55 6.82 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 0.87 7.81 -2.39 -0.02 0.85 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.10 3.40 6.81 -2.91 -0.02 3.38 16 45 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.08 2.75 7.09 -2.39 -0.02 2.74 16 47 H 0.01 0.31 6.63 -2.39 -0.02 0.30 16 48 H 0.08 3.04 8.11 -2.39 -0.02 3.02 16 Total: -1.00 -76.88 378.83 -0.22 -77.10 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.38 Total: 20.88 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.64 Total: 10.35 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -8.85 Total: -124.36 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.06 Total: -25.09 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.78 Total: -3.34 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.89 Total: 44.47 kcal Total: -76.88 -0.22 -77.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601572470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.593 kcal (2) G-P(sol) polarization free energy of solvation -76.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds