Wall clock time and date at job start Wed Apr 1 2020 04:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48491 * 109.47399 * 240.00333 * 3 2 1 5 5 H 1.48502 * 109.46693 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47057 * 119.99830 * 3 2 1 7 7 C 1.38818 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99940 * 162.77046 * 7 2 1 9 9 N 1.36935 * 119.99859 * 342.77918 * 7 2 1 10 10 C 1.46933 * 120.63086 * 331.61406 * 9 7 2 11 11 C 1.53192 * 108.77362 * 233.59044 * 10 9 7 12 12 C 1.53039 * 109.31223 * 305.36216 * 11 10 9 13 13 N 1.46505 * 109.45856 * 181.38873 * 12 11 10 14 14 C 1.34777 * 119.99708 * 154.97610 * 13 12 11 15 15 O 1.21588 * 119.99971 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99474 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99667 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47037 * 179.97438 * 17 16 14 19 19 O 1.21282 * 120.00028 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99804 * 180.27366 * 18 17 16 21 21 C 1.39953 * 120.00050 * 174.37818 * 20 18 17 22 22 C 1.39280 * 120.48806 * 327.44990 * 21 20 18 23 23 C 1.38506 * 118.36002 * 179.73610 * 22 21 20 24 24 C 1.38271 * 119.23403 * 0.52870 * 23 22 21 25 25 N 1.31852 * 120.92146 * 359.72758 * 24 23 22 26 26 C 1.31821 * 121.79464 * 359.97438 * 25 24 23 27 27 C 1.53039 * 109.52724 * 61.37518 * 12 11 10 28 28 C 1.46921 * 120.63364 * 151.59452 * 9 7 2 29 29 H 0.96992 * 120.00361 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58333 * 113.80181 * 10 9 7 31 31 H 1.08998 * 109.69953 * 353.44652 * 10 9 7 32 32 H 1.09004 * 109.49001 * 185.41475 * 11 10 9 33 33 H 1.08994 * 109.49898 * 65.31874 * 11 10 9 34 34 H 1.09001 * 109.46151 * 301.35988 * 12 11 10 35 35 H 0.97002 * 119.99648 * 334.97158 * 13 12 11 36 36 H 0.97001 * 120.00468 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.47633 * 59.99264 * 17 16 14 38 38 H 1.09003 * 109.47245 * 299.98997 * 17 16 14 39 39 H 0.97004 * 120.00050 * 354.37803 * 20 18 17 40 40 H 1.08002 * 120.81765 * 359.97438 * 22 21 20 41 41 H 1.08001 * 120.37802 * 180.25899 * 23 22 21 42 42 H 1.08001 * 119.53757 * 179.75139 * 24 23 22 43 43 H 1.08002 * 119.66892 * 179.97438 * 26 25 24 44 44 H 1.09007 * 109.49655 * 58.57637 * 27 12 11 45 45 H 1.09002 * 109.49851 * 178.67523 * 27 12 11 46 46 H 1.09004 * 109.59026 * 246.19966 * 28 9 7 47 47 H 1.09004 * 109.58584 * 6.47750 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0540 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3500 10 6 0.2350 -2.3383 1.2808 11 6 0.5145 -3.3178 2.4250 12 6 0.8230 -4.6997 1.8443 13 7 1.0583 -5.6468 2.9370 14 6 0.8515 -6.9644 2.7429 15 8 0.4693 -7.3669 1.6611 16 7 1.0675 -7.8356 3.7483 17 6 0.8433 -9.2679 3.5372 18 6 1.1554 -10.0176 4.8067 19 8 1.5288 -9.4150 5.7907 20 7 1.0253 -11.3585 4.8467 21 6 1.4263 -12.0668 5.9852 22 6 2.5012 -11.6227 6.7516 23 6 2.8568 -12.3545 7.8725 24 6 2.1463 -13.4987 8.1853 25 7 1.1366 -13.8954 7.4359 26 6 0.7616 -13.2253 6.3645 27 6 2.0717 -4.6172 0.9634 28 6 1.8098 -3.6527 -0.1976 29 1 -0.4850 0.8399 -0.0004 30 1 -0.6725 -2.6379 0.7566 31 1 0.1098 -1.3329 1.6827 32 1 -0.3612 -3.3818 3.0710 33 1 1.3691 -2.9671 3.0035 34 1 -0.0222 -5.0389 1.2454 35 1 1.3629 -5.3255 3.8001 36 1 1.3720 -7.5144 4.6114 37 1 1.4923 -9.6232 2.7368 38 1 -0.1980 -9.4360 3.2623 39 1 0.6538 -11.8326 4.0863 40 1 3.0415 -10.7276 6.4807 41 1 3.6824 -12.0374 8.4924 42 1 2.4220 -14.0752 9.0560 43 1 -0.0702 -13.5817 5.7750 44 1 2.9116 -4.2541 1.5559 45 1 2.3047 -5.6063 0.5689 46 1 1.0307 -4.0595 -0.8423 47 1 2.7248 -3.5137 -0.7735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609337337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:26 Heat of formation + Delta-G solvation = 1.272591 kcal Electronic energy + Delta-G solvation = -29153.183400 eV Core-core repulsion = 24950.851460 eV Total energy + Delta-G solvation = -4202.331940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44884 -40.20843 -39.50846 -37.49494 -35.80921 -34.68458 -34.31846 -32.66589 -32.12303 -30.93080 -30.12137 -29.44871 -27.71845 -24.93794 -24.37221 -23.66855 -22.29975 -21.98223 -21.16272 -20.68436 -19.49547 -18.95237 -18.25815 -17.44028 -17.23326 -16.83276 -16.55766 -16.22347 -15.96839 -15.06167 -15.02230 -14.78332 -14.48891 -14.41063 -14.28635 -13.83816 -13.63396 -13.56115 -13.48784 -13.19971 -12.93344 -12.68348 -12.52411 -12.33500 -11.54129 -11.45028 -11.11761 -10.87495 -10.83609 -10.71127 -10.50303 -10.28242 -10.21318 -10.13289 -10.03384 -9.89277 -9.76021 -9.55131 -9.37423 -8.90744 -8.64012 -8.43971 -6.67593 -5.79315 -3.21416 0.47927 0.77001 1.88356 2.06920 2.83110 3.26271 3.32242 3.38666 3.44408 3.45550 3.86146 4.03416 4.29048 4.31929 4.42603 4.49959 4.57965 4.78898 4.89653 4.92198 5.07651 5.34044 5.41280 5.45572 5.51492 5.61158 5.61884 5.66533 5.89352 6.08728 6.12343 6.21460 6.28893 6.35149 6.49328 6.57038 6.59481 6.61440 6.80344 6.86345 6.98343 7.07621 7.32064 7.32130 7.44702 7.61661 7.79647 8.06404 8.45148 8.65075 9.21161 9.84431 10.41760 11.29682 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.001546 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.510017 B =18104.132885 C =18408.021783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.169 3.831 13 N -0.735 5.735 14 C 0.706 3.294 15 O -0.591 6.591 16 N -0.744 5.744 17 C 0.125 3.875 18 C 0.513 3.487 19 O -0.514 6.514 20 N -0.666 5.666 21 C 0.098 3.902 22 C -0.079 4.079 23 C -0.150 4.150 24 C 0.080 3.920 25 N -0.466 5.466 26 C 0.078 3.922 27 C -0.139 4.139 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.393 0.607 36 H 0.406 0.594 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.419 0.581 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.021 0.979 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -26.270 14.473 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.065 3.935 13 N -0.388 5.388 14 C 0.406 3.594 15 O -0.469 6.469 16 N -0.404 5.404 17 C -0.003 4.003 18 C 0.300 3.700 19 O -0.389 6.389 20 N -0.312 5.312 21 C 0.001 3.999 22 C -0.107 4.107 23 C -0.170 4.170 24 C -0.078 4.078 25 N -0.174 5.174 26 C -0.082 4.082 27 C -0.180 4.180 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.226 0.774 36 H 0.243 0.757 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.256 0.744 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.176 0.824 43 H 0.176 0.824 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.319 -26.730 14.315 30.410 hybrid contribution 0.988 1.640 0.272 1.934 sum 3.308 -25.090 14.586 29.210 Atomic orbital electron populations 1.70016 1.05247 1.25652 1.53796 1.25054 0.95274 0.98414 1.00831 0.86369 0.78910 0.83355 0.78119 1.20877 1.21652 1.21081 1.19147 0.92660 0.84826 1.41691 0.91715 1.44078 1.36448 1.01670 1.49296 1.20730 0.89038 0.97814 0.87569 1.22554 1.00601 0.94689 1.00838 1.20949 0.98418 0.87476 0.86647 1.45533 1.72001 1.04681 1.16613 1.15870 0.78568 0.81369 0.83589 1.90930 1.53438 1.78028 1.24508 1.44764 1.74858 1.04946 1.15875 1.20766 1.04192 0.81481 0.93895 1.20936 0.76738 0.81875 0.90418 1.90731 1.44669 1.67442 1.36020 1.43332 1.63548 1.06931 1.17433 1.18809 0.95625 0.94944 0.90495 1.21663 0.94141 1.00199 0.94708 1.22127 1.01450 0.95895 0.97576 1.22775 0.91842 0.94583 0.98561 1.67670 1.14193 1.31185 1.04393 1.22626 0.98708 0.92390 0.94513 1.22400 0.97284 0.99511 0.98805 1.20878 0.97905 0.86506 0.92656 0.93552 0.96045 0.89131 0.92718 0.92172 0.89963 0.77386 0.75722 0.87887 0.87999 0.74432 0.83581 0.84232 0.82425 0.82394 0.92421 0.92698 0.96153 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.23 55.49 0.62 -25.32 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.71 2.99 -172.31 -0.52 -15.23 16 10 C 0.18 4.08 5.30 -3.71 -0.02 4.06 16 11 C -0.15 -2.67 5.55 -26.61 -0.15 -2.81 16 12 C 0.17 2.92 2.42 -67.89 -0.16 2.75 16 13 N -0.74 -10.27 5.08 -58.63 -0.30 -10.57 16 14 C 0.71 10.09 8.53 -86.92 -0.74 9.35 16 15 O -0.59 -10.58 16.01 5.29 0.08 -10.49 16 16 N -0.74 -7.78 5.53 -66.41 -0.37 -8.15 16 17 C 0.13 0.96 6.16 -5.19 -0.03 0.93 16 18 C 0.51 3.83 7.66 -10.98 -0.08 3.75 16 19 O -0.51 -5.40 13.35 5.56 0.07 -5.33 16 20 N -0.67 -3.45 5.35 -9.76 -0.05 -3.50 16 21 C 0.10 0.68 6.31 -83.54 -0.53 0.15 16 22 C -0.08 -0.61 8.77 -39.10 -0.34 -0.95 16 23 C -0.15 -0.94 10.10 -39.47 -0.40 -1.34 16 24 C 0.08 0.53 11.18 -17.53 -0.20 0.33 16 25 N -0.47 -3.81 10.35 -13.09 -0.14 -3.95 16 26 C 0.08 0.52 11.12 -17.33 -0.19 0.33 16 27 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 28 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 2.35 6.09 -51.93 -0.32 2.03 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 35 H 0.39 4.50 8.62 -40.82 -0.35 4.15 16 36 H 0.41 3.89 7.45 -40.82 -0.30 3.59 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.42 0.76 8.82 -40.82 -0.36 0.40 16 40 H 0.15 1.22 6.47 -52.49 -0.34 0.88 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -35.08 389.03 -9.68 -44.76 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.68 Total: 5.52 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -3.25 Total: 9.93 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.75 Total: -66.72 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.16 Total: -15.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.08 -9.68 -44.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.035 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds