Wall clock time and date at job start Wed Apr 1 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48491 * 109.47399 * 240.00333 * 3 2 1 5 5 H 1.48502 * 109.46693 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47057 * 119.99830 * 3 2 1 7 7 C 1.38818 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99940 * 162.77046 * 7 2 1 9 9 N 1.36935 * 119.99859 * 342.77918 * 7 2 1 10 10 C 1.46933 * 120.63086 * 331.61406 * 9 7 2 11 11 C 1.53192 * 108.77362 * 233.59044 * 10 9 7 12 12 C 1.53039 * 109.31223 * 305.36216 * 11 10 9 13 13 N 1.46505 * 109.45856 * 181.38873 * 12 11 10 14 14 C 1.34777 * 119.99708 * 154.97610 * 13 12 11 15 15 O 1.21588 * 119.99971 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99474 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99667 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.47037 * 179.97438 * 17 16 14 19 19 O 1.21282 * 120.00028 * 359.97438 * 18 17 16 20 20 N 1.34773 * 119.99804 * 180.27366 * 18 17 16 21 21 C 1.39953 * 120.00050 * 174.37818 * 20 18 17 22 22 C 1.39280 * 120.48806 * 327.44990 * 21 20 18 23 23 C 1.38506 * 118.36002 * 179.73610 * 22 21 20 24 24 C 1.38271 * 119.23403 * 0.52870 * 23 22 21 25 25 N 1.31852 * 120.92146 * 359.72758 * 24 23 22 26 26 C 1.31821 * 121.79464 * 359.97438 * 25 24 23 27 27 C 1.53039 * 109.52724 * 61.37518 * 12 11 10 28 28 C 1.46921 * 120.63364 * 151.59452 * 9 7 2 29 29 H 0.96992 * 120.00361 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58333 * 113.80181 * 10 9 7 31 31 H 1.08998 * 109.69953 * 353.44652 * 10 9 7 32 32 H 1.09004 * 109.49001 * 185.41475 * 11 10 9 33 33 H 1.08994 * 109.49898 * 65.31874 * 11 10 9 34 34 H 1.09001 * 109.46151 * 301.35988 * 12 11 10 35 35 H 0.97002 * 119.99648 * 334.97158 * 13 12 11 36 36 H 0.97001 * 120.00468 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.47633 * 59.99264 * 17 16 14 38 38 H 1.09003 * 109.47245 * 299.98997 * 17 16 14 39 39 H 0.97004 * 120.00050 * 354.37803 * 20 18 17 40 40 H 1.08002 * 120.81765 * 359.97438 * 22 21 20 41 41 H 1.08001 * 120.37802 * 180.25899 * 23 22 21 42 42 H 1.08001 * 119.53757 * 179.75139 * 24 23 22 43 43 H 1.08002 * 119.66892 * 179.97438 * 26 25 24 44 44 H 1.09007 * 109.49655 * 58.57637 * 27 12 11 45 45 H 1.09002 * 109.49851 * 178.67523 * 27 12 11 46 46 H 1.09004 * 109.59026 * 246.19966 * 28 9 7 47 47 H 1.09004 * 109.58584 * 6.47750 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0540 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3500 10 6 0.2350 -2.3383 1.2808 11 6 0.5145 -3.3178 2.4250 12 6 0.8230 -4.6997 1.8443 13 7 1.0583 -5.6468 2.9370 14 6 0.8515 -6.9644 2.7429 15 8 0.4693 -7.3669 1.6611 16 7 1.0675 -7.8356 3.7483 17 6 0.8433 -9.2679 3.5372 18 6 1.1554 -10.0176 4.8067 19 8 1.5288 -9.4150 5.7907 20 7 1.0253 -11.3585 4.8467 21 6 1.4263 -12.0668 5.9852 22 6 2.5012 -11.6227 6.7516 23 6 2.8568 -12.3545 7.8725 24 6 2.1463 -13.4987 8.1853 25 7 1.1366 -13.8954 7.4359 26 6 0.7616 -13.2253 6.3645 27 6 2.0717 -4.6172 0.9634 28 6 1.8098 -3.6527 -0.1976 29 1 -0.4850 0.8399 -0.0004 30 1 -0.6725 -2.6379 0.7566 31 1 0.1098 -1.3329 1.6827 32 1 -0.3612 -3.3818 3.0710 33 1 1.3691 -2.9671 3.0035 34 1 -0.0222 -5.0389 1.2454 35 1 1.3629 -5.3255 3.8001 36 1 1.3720 -7.5144 4.6114 37 1 1.4923 -9.6232 2.7368 38 1 -0.1980 -9.4360 3.2623 39 1 0.6538 -11.8326 4.0863 40 1 3.0415 -10.7276 6.4807 41 1 3.6824 -12.0374 8.4924 42 1 2.4220 -14.0752 9.0560 43 1 -0.0702 -13.5817 5.7750 44 1 2.9116 -4.2541 1.5559 45 1 2.3047 -5.6063 0.5689 46 1 1.0307 -4.0595 -0.8423 47 1 2.7248 -3.5137 -0.7735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:25 Heat of formation + Delta-G solvation = -25.138942 kcal Electronic energy + Delta-G solvation = -29154.328690 eV Core-core repulsion = 24950.851460 eV Total energy + Delta-G solvation = -4203.477230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02376 -41.19002 -40.25363 -39.04842 -36.40755 -36.04028 -35.45788 -33.88163 -33.15651 -31.88962 -31.50760 -30.99798 -28.59089 -26.71805 -24.93234 -24.30727 -23.90823 -23.53464 -21.85306 -21.74579 -21.03824 -19.86073 -19.10303 -18.61411 -17.95288 -17.81754 -17.38852 -17.22820 -16.79714 -16.64210 -15.95001 -15.91838 -15.73271 -15.35342 -15.24786 -14.97367 -14.90029 -14.73187 -14.44515 -14.42658 -14.06635 -14.01564 -13.68589 -13.18638 -13.11226 -12.98830 -12.56678 -12.53226 -12.22824 -12.08329 -12.02130 -11.85002 -11.56616 -11.48226 -11.39699 -11.23620 -10.72320 -10.53865 -10.41029 -10.39074 -9.80126 -9.39639 -8.68786 -7.86677 -5.32083 -0.01597 0.25387 1.31634 1.35857 1.49671 1.51434 1.58450 2.01430 2.13894 2.53178 2.83256 3.23219 3.31083 3.36540 3.62543 3.68950 3.83846 3.92130 3.96626 4.08461 4.09702 4.31108 4.32825 4.35106 4.37115 4.48650 4.67298 4.67758 4.82768 4.87691 4.98564 5.03477 5.08995 5.13048 5.17619 5.18163 5.28453 5.32772 5.48618 5.59648 5.66055 5.71011 5.73116 5.96953 6.15541 6.40382 6.82366 6.95917 7.05069 7.15962 7.55447 7.85769 8.38734 9.20288 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.001546 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.510017 B =18104.132885 C =18408.021783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.048 4.048 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.129 4.129 12 C 0.182 3.818 13 N -0.727 5.727 14 C 0.707 3.293 15 O -0.627 6.627 16 N -0.731 5.731 17 C 0.124 3.876 18 C 0.520 3.480 19 O -0.546 6.546 20 N -0.649 5.649 21 C 0.089 3.911 22 C -0.097 4.097 23 C -0.151 4.151 24 C 0.073 3.927 25 N -0.492 5.492 26 C 0.075 3.925 27 C -0.124 4.124 28 C 0.144 3.856 29 H 0.251 0.749 30 H -0.004 1.004 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.409 0.591 36 H 0.412 0.588 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.435 0.565 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.181 0.819 43 H 0.182 0.818 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.009 0.991 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -27.691 15.816 32.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.169 4.169 12 C 0.077 3.923 13 N -0.381 5.381 14 C 0.407 3.593 15 O -0.508 6.508 16 N -0.391 5.391 17 C -0.004 4.004 18 C 0.308 3.692 19 O -0.423 6.423 20 N -0.297 5.297 21 C -0.008 4.008 22 C -0.125 4.125 23 C -0.171 4.171 24 C -0.084 4.084 25 N -0.200 5.200 26 C -0.085 4.085 27 C -0.164 4.164 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.014 0.986 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.250 0.750 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.275 0.725 40 H 0.154 0.846 41 H 0.178 0.822 42 H 0.198 0.802 43 H 0.199 0.801 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.027 0.973 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.302 -28.224 15.693 32.462 hybrid contribution 0.685 1.970 -0.154 2.092 sum 3.987 -26.254 15.539 30.767 Atomic orbital electron populations 1.70175 1.06663 1.26005 1.55175 1.25804 0.96013 1.01477 1.01053 0.85337 0.77551 0.79169 0.78336 1.20278 1.22083 1.20266 1.19484 0.92971 0.85948 1.41177 0.91547 1.44328 1.36571 1.02215 1.50085 1.20550 0.87907 0.97612 0.88644 1.22267 1.01902 0.93769 0.98936 1.20516 0.97142 0.87538 0.87152 1.45148 1.72126 1.04378 1.16418 1.15913 0.78267 0.81500 0.83669 1.90914 1.55111 1.78609 1.26209 1.44635 1.73612 1.05703 1.15133 1.20943 1.05333 0.79807 0.94294 1.20831 0.76240 0.82363 0.89769 1.90726 1.46381 1.68225 1.36996 1.43146 1.62705 1.06187 1.17616 1.18890 0.95713 0.95247 0.90944 1.21769 0.94769 1.00296 0.95658 1.22368 1.01856 0.95559 0.97308 1.23199 0.91364 0.94803 0.99010 1.67707 1.15088 1.32012 1.05210 1.22983 0.99084 0.92051 0.94372 1.22192 0.97841 0.98690 0.97680 1.20975 0.97406 0.85891 0.93907 0.94031 0.98554 0.92031 0.90567 0.91299 0.92142 0.75560 0.74969 0.86659 0.86712 0.72457 0.84575 0.82205 0.80202 0.80120 0.91774 0.92003 0.97293 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 11.23 21.65 0.24 -54.70 16 2 C -0.05 -2.65 4.91 84.86 0.42 -2.24 16 3 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.27 -14.56 9.58 84.04 0.80 -13.76 16 8 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 9 N -0.61 -30.58 2.99 -699.08 -2.09 -32.67 16 10 C 0.18 8.51 5.30 86.36 0.46 8.97 16 11 C -0.13 -4.55 5.55 30.67 0.17 -4.38 16 12 C 0.18 6.08 2.42 45.02 0.11 6.19 16 13 N -0.73 -18.82 5.08 -457.68 -2.33 -21.15 16 14 C 0.71 18.90 8.53 179.06 1.53 20.43 16 15 O -0.63 -21.64 16.01 -3.99 -0.06 -21.70 16 16 N -0.73 -13.79 5.53 -482.29 -2.67 -16.46 16 17 C 0.12 1.63 6.16 85.64 0.53 2.16 16 18 C 0.52 6.88 7.66 87.66 0.67 7.55 16 19 O -0.55 -10.82 13.35 -3.04 -0.04 -10.86 16 20 N -0.65 -5.53 5.35 -303.19 -1.62 -7.15 16 21 C 0.09 1.12 6.31 38.24 0.24 1.36 16 22 C -0.10 -1.40 8.77 22.58 0.20 -1.21 16 23 C -0.15 -1.71 10.10 22.34 0.23 -1.48 16 24 C 0.07 0.86 11.18 84.70 0.95 1.80 16 25 N -0.49 -7.38 10.35 -195.32 -2.02 -9.40 16 26 C 0.07 0.89 11.12 84.84 0.94 1.83 16 27 C -0.12 -4.36 5.65 30.67 0.17 -4.19 16 28 C 0.14 6.21 6.52 86.36 0.56 6.77 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.06 3.27 6.09 -2.39 -0.01 3.26 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 35 H 0.41 8.25 8.62 -92.71 -0.80 7.45 16 36 H 0.41 7.04 7.45 -92.71 -0.69 6.35 16 37 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.44 0.58 8.82 -92.70 -0.82 -0.23 16 40 H 0.14 2.23 6.47 -2.91 -0.02 2.21 16 41 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 46 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 47 H 0.06 2.40 7.93 -2.38 -0.02 2.38 16 Total: -1.00 -76.50 389.03 -1.86 -78.37 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -1.28 Total: 19.48 kcal Atomic # 6 Polarization: 21.82 SS G_CDS: 7.98 Total: 29.80 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -10.49 Total: -141.53 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.10 Total: -32.56 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -76.50 -1.86 -78.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.227 kcal (2) G-P(sol) polarization free energy of solvation -76.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds