Wall clock time and date at job start Wed Apr 1 2020 04:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48493 * 109.47280 * 240.00003 * 3 2 1 5 5 H 1.48504 * 109.46836 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46961 * 119.99981 * 3 2 1 7 7 C 1.38806 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00553 * 197.23620 * 7 2 1 9 9 N 1.36940 * 119.99797 * 16.96407 * 7 2 1 10 10 C 1.46928 * 120.62967 * 207.67954 * 9 7 2 11 11 C 1.52764 * 109.00952 * 233.58619 * 10 9 7 12 12 C 1.53044 * 109.37900 * 305.59004 * 11 10 9 13 13 N 1.46508 * 109.44342 * 181.25465 * 12 11 10 14 14 C 1.34779 * 120.00022 * 84.94138 * 13 12 11 15 15 O 1.21588 * 119.99849 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99953 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99961 * 180.02562 * 16 14 13 18 18 H 1.08987 * 110.26746 * 34.29637 * 17 16 14 19 19 C 1.54342 * 110.30279 * 156.37642 * 17 16 14 20 20 C 1.54492 * 102.32840 * 145.21651 * 19 17 16 21 21 C 1.51375 * 105.21441 * 333.75401 * 20 19 17 22 22 C 1.38517 * 130.35745 * 197.12448 * 21 20 19 23 23 C 1.38068 * 120.24949 * 179.97438 * 22 21 20 24 24 C 1.38481 * 119.90846 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.05958 * 179.97438 * 24 23 22 26 26 C 1.38328 * 119.87955 * 0.02562 * 24 23 22 27 27 C 1.38237 * 109.75561 * 17.13074 * 21 20 19 28 28 C 1.53035 * 109.54058 * 61.24171 * 12 11 10 29 29 C 1.46923 * 120.63092 * 27.96536 * 9 7 2 30 30 H 0.97000 * 120.00227 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58757 * 353.42194 * 10 9 7 32 32 H 1.08997 * 109.58464 * 113.84580 * 10 9 7 33 33 H 1.08997 * 109.56143 * 185.55562 * 11 10 9 34 34 H 1.08995 * 109.36287 * 65.49689 * 11 10 9 35 35 H 1.09004 * 109.46025 * 301.21458 * 12 11 10 36 36 H 0.97004 * 119.99593 * 264.93324 * 13 12 11 37 37 H 0.97004 * 119.99662 * 359.97438 * 16 14 13 38 38 H 1.09006 * 110.82221 * 263.50224 * 19 17 16 39 39 H 1.09002 * 110.82337 * 27.04669 * 19 17 16 40 40 H 1.08996 * 110.33478 * 214.78817 * 20 19 17 41 41 H 1.08994 * 110.30823 * 92.70721 * 20 19 17 42 42 H 1.07994 * 119.87571 * 0.02562 * 22 21 20 43 43 H 1.07997 * 120.04557 * 180.02562 * 23 22 21 44 44 H 1.07994 * 119.89826 * 179.97438 * 26 24 23 45 45 H 1.09000 * 109.49828 * 178.68218 * 28 12 11 46 46 H 1.09001 * 109.49742 * 58.58091 * 28 12 11 47 47 H 1.09001 * 109.58556 * 246.15531 * 29 9 7 48 48 H 1.09005 * 109.58879 * 6.57688 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2230 0.2777 9 7 1.3702 -2.3624 -0.3450 10 6 1.8205 -3.6540 0.1915 11 6 2.0692 -4.6154 -0.9693 12 6 0.8119 -4.6990 -1.8378 13 7 1.0387 -5.6436 -2.9345 14 6 0.8375 -6.9621 -2.7407 15 8 0.4683 -7.3677 -1.6556 16 7 1.0456 -7.8310 -3.7498 17 6 0.8264 -9.2641 -3.5393 18 1 -0.0025 -9.4219 -2.8494 19 6 0.5447 -9.9660 -4.8847 20 6 1.2133 -11.3443 -4.6840 21 6 2.3071 -11.1104 -3.6640 22 6 3.4095 -11.8832 -3.3379 23 6 4.2877 -11.4637 -2.3585 24 6 4.0659 -10.2664 -1.6990 25 9 4.9230 -9.8533 -0.7399 26 6 2.9647 -9.4947 -2.0234 27 6 2.0848 -9.9151 -3.0062 28 6 0.4942 -3.3168 -2.4128 29 6 0.2242 -2.3400 -1.2641 30 1 -0.4850 0.8400 0.0004 31 1 2.7443 -3.5144 0.7529 32 1 1.0518 -4.0660 0.8453 33 1 2.3082 -5.6047 -0.5789 34 1 2.9023 -4.2495 -1.5694 35 1 -0.0265 -5.0414 -1.2311 36 1 1.3335 -5.3199 -3.8002 37 1 1.3398 -7.5073 -4.6156 38 1 -0.5276 -10.0740 -5.0483 39 1 1.0109 -9.4259 -5.7087 40 1 1.6404 -11.6983 -5.6222 41 1 0.4889 -12.0643 -4.3034 42 1 3.5831 -12.8168 -3.8521 43 1 5.1463 -12.0686 -2.1072 44 1 2.7913 -8.5611 -1.5090 45 1 -0.3877 -3.3818 -3.0500 46 1 1.3422 -2.9631 -2.9993 47 1 -0.6774 -2.6427 -0.7314 48 1 0.0950 -1.3338 -1.6628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609339888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:03 Heat of formation + Delta-G solvation = -30.447197 kcal Electronic energy + Delta-G solvation = -30465.116483 eV Core-core repulsion = 26241.489108 eV Total energy + Delta-G solvation = -4223.627375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.00803 -40.82600 -39.54103 -37.50085 -36.12345 -34.34616 -33.63249 -32.08460 -31.21462 -30.08577 -29.36724 -28.91210 -26.80736 -24.85010 -23.30853 -22.38213 -22.08460 -21.46586 -21.13197 -20.55385 -19.41357 -18.18733 -17.51076 -16.98202 -16.63531 -16.34812 -15.71163 -15.70275 -15.36959 -15.06003 -14.81740 -14.51712 -14.23054 -13.84575 -13.75207 -13.57432 -13.52639 -13.20522 -12.94761 -12.73686 -12.62270 -12.36825 -12.28414 -12.08205 -11.91773 -11.44572 -11.30201 -11.23535 -11.08880 -10.83317 -10.70290 -10.47972 -10.25899 -10.05317 -10.01105 -9.73557 -9.52928 -9.29646 -9.17522 -8.71709 -8.61019 -8.42589 -6.67026 -5.77976 -3.19524 0.85041 0.96301 2.74918 3.28549 3.33738 3.39527 3.44976 3.46326 3.81389 4.08397 4.21507 4.33416 4.50963 4.54604 4.68315 4.70269 4.81101 4.92221 5.26231 5.27442 5.35279 5.37226 5.41090 5.44381 5.52842 5.59382 5.62666 5.67476 5.79942 5.91509 5.92322 5.94658 6.10369 6.20937 6.32210 6.37492 6.41776 6.51303 6.59561 6.62434 6.65106 6.82814 6.90416 7.00930 7.11253 7.34005 7.63370 7.80580 8.12801 8.46179 8.73538 9.22565 9.85848 10.42789 11.31134 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002314 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.538197 B =12095.722538 C =13201.858971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.139 4.139 12 C 0.169 3.831 13 N -0.738 5.738 14 C 0.701 3.299 15 O -0.588 6.588 16 N -0.745 5.745 17 C 0.203 3.797 18 H 0.108 0.892 19 C -0.124 4.124 20 C -0.077 4.077 21 C -0.108 4.108 22 C -0.083 4.083 23 C -0.151 4.151 24 C 0.095 3.905 25 F -0.138 7.138 26 C -0.117 4.117 27 C -0.079 4.079 28 C -0.146 4.146 29 C 0.175 3.825 30 H 0.254 0.746 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.391 0.609 37 H 0.395 0.605 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.021 0.979 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 -24.452 -14.242 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.021 3.979 11 C -0.180 4.180 12 C 0.065 3.935 13 N -0.391 5.391 14 C 0.401 3.599 15 O -0.465 6.465 16 N -0.400 5.400 17 C 0.098 3.902 18 H 0.126 0.874 19 C -0.162 4.162 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.102 4.102 23 C -0.170 4.170 24 C 0.076 3.924 25 F -0.117 7.117 26 C -0.136 4.136 27 C -0.080 4.080 28 C -0.186 4.186 29 C 0.048 3.952 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.224 0.776 37 H 0.230 0.770 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.039 0.961 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.648 -24.610 -13.144 28.026 hybrid contribution 1.039 1.245 -0.532 1.707 sum 3.687 -23.364 -13.676 27.323 Atomic orbital electron populations 1.70014 1.05230 1.25612 1.53989 1.25037 0.95290 0.98391 1.00972 0.86362 0.78893 0.83350 0.78123 1.21086 1.21650 1.20885 1.19161 0.92649 0.84780 1.41548 0.91686 1.44078 1.35532 1.01549 1.50376 1.20786 0.97856 0.86504 0.92766 1.22318 0.97269 0.99475 0.98900 1.20921 0.98310 0.87572 0.86687 1.45571 1.72630 1.04899 1.16040 1.16068 0.78388 0.81328 0.84149 1.90935 1.53523 1.77856 1.24208 1.45229 1.74630 1.05890 1.14273 1.20293 0.94386 0.78680 0.96883 0.87426 1.22638 1.02033 0.95324 0.96180 1.21016 0.95268 0.97512 0.97641 1.20570 0.96234 0.95401 0.98641 1.20391 0.93239 0.99547 0.96974 1.21037 1.01671 0.96012 0.98279 1.17575 0.90016 0.94868 0.89935 1.91519 1.68635 1.90288 1.61215 1.20695 0.93394 1.01098 0.98458 1.20743 0.96407 0.95658 0.95211 1.22544 1.00444 0.94752 1.00867 1.20750 0.88891 0.97925 0.87644 0.93564 0.92638 0.96194 0.92757 0.92506 0.90038 0.77628 0.77049 0.89314 0.90053 0.90099 0.89554 0.85205 0.84637 0.84600 0.92780 0.92262 0.96088 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 11.18 55.49 0.62 -25.57 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -14.95 3.00 -172.58 -0.52 -15.47 16 10 C 0.15 3.25 6.49 -3.93 -0.03 3.23 16 11 C -0.14 -2.61 5.64 -26.83 -0.15 -2.76 16 12 C 0.17 2.96 2.42 -67.89 -0.16 2.80 16 13 N -0.74 -10.27 5.08 -58.63 -0.30 -10.57 16 14 C 0.70 10.10 8.08 -86.92 -0.70 9.39 16 15 O -0.59 -10.92 15.28 5.29 0.08 -10.84 16 16 N -0.74 -7.53 5.10 -58.79 -0.30 -7.83 16 17 C 0.20 1.92 3.18 -68.05 -0.22 1.70 16 18 H 0.11 1.21 7.60 -51.94 -0.39 0.81 16 19 C -0.12 -0.69 6.77 -25.25 -0.17 -0.86 16 20 C -0.08 -0.41 6.77 -26.77 -0.18 -0.59 16 21 C -0.11 -0.89 6.14 -104.19 -0.64 -1.53 16 22 C -0.08 -0.65 10.04 -39.54 -0.40 -1.05 16 23 C -0.15 -1.40 10.03 -39.55 -0.40 -1.80 16 24 C 0.10 1.15 7.30 -39.46 -0.29 0.86 16 25 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 26 C -0.12 -1.51 9.90 -39.47 -0.39 -1.90 16 27 C -0.08 -0.83 5.79 -104.21 -0.60 -1.44 16 28 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 29 C 0.17 4.11 5.31 -3.71 -0.02 4.09 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 36 H 0.39 4.31 8.62 -40.82 -0.35 3.96 16 37 H 0.40 2.87 8.41 -40.82 -0.34 2.53 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.37 7.81 -51.93 -0.41 -0.04 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.14 2.06 7.28 -52.49 -0.38 1.68 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -32.93 388.58 -11.47 -44.40 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.20 Total: 4.99 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -4.72 Total: 0.20 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.50 Total: -59.44 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.93 -11.47 -44.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.950 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds