Wall clock time and date at job start Wed Apr 1 2020 04:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48493 * 109.47280 * 240.00003 * 3 2 1 5 5 H 1.48504 * 109.46836 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46961 * 119.99981 * 3 2 1 7 7 C 1.38806 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00553 * 197.23620 * 7 2 1 9 9 N 1.36940 * 119.99797 * 16.96407 * 7 2 1 10 10 C 1.46928 * 120.62967 * 207.67954 * 9 7 2 11 11 C 1.52764 * 109.00952 * 233.58619 * 10 9 7 12 12 C 1.53044 * 109.37900 * 305.59004 * 11 10 9 13 13 N 1.46508 * 109.44342 * 181.25465 * 12 11 10 14 14 C 1.34779 * 120.00022 * 84.94138 * 13 12 11 15 15 O 1.21588 * 119.99849 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99953 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99961 * 180.02562 * 16 14 13 18 18 H 1.08987 * 110.26746 * 34.29637 * 17 16 14 19 19 C 1.54342 * 110.30279 * 156.37642 * 17 16 14 20 20 C 1.54492 * 102.32840 * 145.21651 * 19 17 16 21 21 C 1.51375 * 105.21441 * 333.75401 * 20 19 17 22 22 C 1.38517 * 130.35745 * 197.12448 * 21 20 19 23 23 C 1.38068 * 120.24949 * 179.97438 * 22 21 20 24 24 C 1.38481 * 119.90846 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.05958 * 179.97438 * 24 23 22 26 26 C 1.38328 * 119.87955 * 0.02562 * 24 23 22 27 27 C 1.38237 * 109.75561 * 17.13074 * 21 20 19 28 28 C 1.53035 * 109.54058 * 61.24171 * 12 11 10 29 29 C 1.46923 * 120.63092 * 27.96536 * 9 7 2 30 30 H 0.97000 * 120.00227 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58757 * 353.42194 * 10 9 7 32 32 H 1.08997 * 109.58464 * 113.84580 * 10 9 7 33 33 H 1.08997 * 109.56143 * 185.55562 * 11 10 9 34 34 H 1.08995 * 109.36287 * 65.49689 * 11 10 9 35 35 H 1.09004 * 109.46025 * 301.21458 * 12 11 10 36 36 H 0.97004 * 119.99593 * 264.93324 * 13 12 11 37 37 H 0.97004 * 119.99662 * 359.97438 * 16 14 13 38 38 H 1.09006 * 110.82221 * 263.50224 * 19 17 16 39 39 H 1.09002 * 110.82337 * 27.04669 * 19 17 16 40 40 H 1.08996 * 110.33478 * 214.78817 * 20 19 17 41 41 H 1.08994 * 110.30823 * 92.70721 * 20 19 17 42 42 H 1.07994 * 119.87571 * 0.02562 * 22 21 20 43 43 H 1.07997 * 120.04557 * 180.02562 * 23 22 21 44 44 H 1.07994 * 119.89826 * 179.97438 * 26 24 23 45 45 H 1.09000 * 109.49828 * 178.68218 * 28 12 11 46 46 H 1.09001 * 109.49742 * 58.58091 * 28 12 11 47 47 H 1.09001 * 109.58556 * 246.15531 * 29 9 7 48 48 H 1.09005 * 109.58879 * 6.57688 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2230 0.2777 9 7 1.3702 -2.3624 -0.3450 10 6 1.8205 -3.6540 0.1915 11 6 2.0692 -4.6154 -0.9693 12 6 0.8119 -4.6990 -1.8378 13 7 1.0387 -5.6436 -2.9345 14 6 0.8375 -6.9621 -2.7407 15 8 0.4683 -7.3677 -1.6556 16 7 1.0456 -7.8310 -3.7498 17 6 0.8264 -9.2641 -3.5393 18 1 -0.0025 -9.4219 -2.8494 19 6 0.5447 -9.9660 -4.8847 20 6 1.2133 -11.3443 -4.6840 21 6 2.3071 -11.1104 -3.6640 22 6 3.4095 -11.8832 -3.3379 23 6 4.2877 -11.4637 -2.3585 24 6 4.0659 -10.2664 -1.6990 25 9 4.9230 -9.8533 -0.7399 26 6 2.9647 -9.4947 -2.0234 27 6 2.0848 -9.9151 -3.0062 28 6 0.4942 -3.3168 -2.4128 29 6 0.2242 -2.3400 -1.2641 30 1 -0.4850 0.8400 0.0004 31 1 2.7443 -3.5144 0.7529 32 1 1.0518 -4.0660 0.8453 33 1 2.3082 -5.6047 -0.5789 34 1 2.9023 -4.2495 -1.5694 35 1 -0.0265 -5.0414 -1.2311 36 1 1.3335 -5.3199 -3.8002 37 1 1.3398 -7.5073 -4.6156 38 1 -0.5276 -10.0740 -5.0483 39 1 1.0109 -9.4259 -5.7087 40 1 1.6404 -11.6983 -5.6222 41 1 0.4889 -12.0643 -4.3034 42 1 3.5831 -12.8168 -3.8521 43 1 5.1463 -12.0686 -2.1072 44 1 2.7913 -8.5611 -1.5090 45 1 -0.3877 -3.3818 -3.0500 46 1 1.3422 -2.9631 -2.9993 47 1 -0.6774 -2.6427 -0.7314 48 1 0.0950 -1.3338 -1.6628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609339888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:02 Heat of formation + Delta-G solvation = -51.133448 kcal Electronic energy + Delta-G solvation = -30466.013506 eV Core-core repulsion = 26241.489108 eV Total energy + Delta-G solvation = -4224.524398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.95878 -41.69343 -40.62230 -39.07743 -36.97110 -35.94246 -34.60827 -33.76665 -32.16363 -31.72956 -31.03114 -29.62208 -27.70851 -26.63583 -24.07250 -23.97091 -23.72118 -22.32616 -21.90704 -21.67352 -21.05915 -19.43684 -18.69941 -18.28021 -17.79294 -17.27773 -16.89816 -16.66818 -16.46263 -16.29989 -16.13599 -15.70975 -15.43288 -15.37784 -15.16807 -14.78784 -14.59466 -14.40621 -14.36965 -14.05428 -13.82105 -13.38924 -13.24998 -13.04506 -12.98701 -12.63269 -12.58617 -12.56644 -12.50460 -12.25474 -12.05525 -12.02391 -11.89379 -11.76161 -11.58326 -11.41126 -11.21378 -10.56675 -10.34436 -9.98461 -9.79010 -9.44951 -8.73167 -7.89103 -5.34589 0.09964 0.19206 1.47998 1.49531 1.57129 1.70883 2.15760 2.51060 2.55431 3.08436 3.24138 3.32124 3.46312 3.58084 3.64290 3.87789 3.93953 4.01282 4.03852 4.16045 4.18705 4.27823 4.32038 4.43241 4.62356 4.63176 4.68426 4.78188 4.80876 4.84472 4.92712 4.99721 5.02333 5.06931 5.12467 5.13687 5.19431 5.20179 5.26194 5.27696 5.45081 5.48802 5.57699 5.60687 5.62687 5.68999 5.90023 6.03812 6.37392 7.13053 7.13282 7.61742 7.82038 8.35263 9.18161 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002314 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.538197 B =12095.722538 C =13201.858971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.608 5.608 10 C 0.146 3.854 11 C -0.123 4.123 12 C 0.183 3.817 13 N -0.727 5.727 14 C 0.699 3.301 15 O -0.633 6.633 16 N -0.724 5.724 17 C 0.197 3.803 18 H 0.084 0.916 19 C -0.112 4.112 20 C -0.072 4.072 21 C -0.097 4.097 22 C -0.076 4.076 23 C -0.147 4.147 24 C 0.063 3.937 25 F -0.156 7.156 26 C -0.144 4.144 27 C -0.097 4.097 28 C -0.126 4.126 29 C 0.178 3.822 30 H 0.252 0.748 31 H 0.054 0.946 32 H 0.006 0.994 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.410 0.590 37 H 0.413 0.587 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.170 0.830 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.070 0.930 47 H -0.005 1.005 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -26.748 -17.881 32.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.083 0.917 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.164 4.164 12 C 0.077 3.923 13 N -0.382 5.382 14 C 0.399 3.601 15 O -0.514 6.514 16 N -0.380 5.380 17 C 0.091 3.909 18 H 0.101 0.899 19 C -0.150 4.150 20 C -0.109 4.109 21 C -0.098 4.098 22 C -0.093 4.093 23 C -0.165 4.165 24 C 0.044 3.956 25 F -0.135 7.135 26 C -0.163 4.163 27 C -0.099 4.099 28 C -0.166 4.166 29 C 0.052 3.948 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.246 0.754 37 H 0.250 0.750 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.187 0.813 43 H 0.175 0.825 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.013 0.987 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.440 -26.942 -16.857 31.967 hybrid contribution 0.781 1.853 0.648 2.113 sum 4.220 -25.089 -16.209 30.166 Atomic orbital electron populations 1.70176 1.06664 1.26098 1.55132 1.25815 0.96073 1.01522 1.00998 0.85304 0.77539 0.78995 0.78357 1.20084 1.21863 1.20416 1.19483 0.92921 0.85880 1.41387 0.91660 1.44326 1.35739 1.01952 1.51176 1.20845 0.97176 0.86091 0.93911 1.22100 0.98134 0.98203 0.97922 1.20460 0.96615 0.87938 0.87263 1.45140 1.72730 1.04406 1.15878 1.16220 0.78028 0.81594 0.84299 1.90912 1.55491 1.78582 1.26431 1.45053 1.73251 1.05866 1.13872 1.20529 0.93187 0.78119 0.99042 0.89850 1.22684 1.03449 0.94996 0.93852 1.21137 0.94361 0.97523 0.97873 1.21024 0.96703 0.93844 0.98221 1.20855 0.92067 1.00502 0.95895 1.21354 1.02604 0.94712 0.97850 1.17912 0.90248 0.96478 0.90914 1.91460 1.69182 1.90707 1.62151 1.20579 0.95236 1.00495 0.99993 1.20923 0.96508 0.97227 0.95228 1.22249 1.01997 0.93436 0.98925 1.20590 0.87615 0.97870 0.88717 0.93918 0.92714 0.97649 0.92986 0.91791 0.92636 0.75433 0.74968 0.87639 0.88217 0.87219 0.88095 0.81264 0.82506 0.88383 0.90242 0.91170 0.98720 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 11.18 21.65 0.24 -55.43 16 2 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 3 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.27 -14.98 9.58 84.03 0.81 -14.18 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -31.63 3.00 -699.92 -2.10 -33.73 16 10 C 0.15 6.68 6.49 86.22 0.56 7.24 16 11 C -0.12 -4.73 5.64 30.53 0.17 -4.56 16 12 C 0.18 6.48 2.42 45.02 0.11 6.59 16 13 N -0.73 -19.69 5.08 -457.66 -2.33 -22.01 16 14 C 0.70 20.22 8.08 179.06 1.45 21.67 16 15 O -0.63 -24.65 15.28 -3.99 -0.06 -24.71 16 16 N -0.72 -13.83 5.10 -458.19 -2.34 -16.17 16 17 C 0.20 3.47 3.18 44.92 0.14 3.61 16 18 H 0.08 1.89 7.60 -2.39 -0.02 1.88 16 19 C -0.11 -0.81 6.77 31.56 0.21 -0.59 16 20 C -0.07 -0.42 6.77 30.57 0.21 -0.22 16 21 C -0.10 -1.31 6.14 -19.58 -0.12 -1.43 16 22 C -0.08 -0.91 10.04 22.30 0.22 -0.69 16 23 C -0.15 -2.48 10.03 22.29 0.22 -2.26 16 24 C 0.06 1.59 7.30 22.35 0.16 1.75 16 25 F -0.16 -4.52 17.27 44.97 0.78 -3.74 16 26 C -0.14 -3.92 9.90 22.34 0.22 -3.69 16 27 C -0.10 -2.00 5.79 -19.60 -0.11 -2.12 16 28 C -0.13 -4.57 5.55 30.67 0.17 -4.40 16 29 C 0.18 8.67 5.31 86.36 0.46 9.13 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.05 2.46 7.93 -2.39 -0.02 2.44 16 32 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.06 2.30 7.58 -2.38 -0.02 2.28 16 36 H 0.41 8.14 8.62 -92.71 -0.80 7.34 16 37 H 0.41 4.95 8.41 -92.71 -0.78 4.17 16 38 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.10 0.40 7.81 -2.39 -0.02 0.38 16 40 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.10 3.33 7.28 -2.91 -0.02 3.31 16 45 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.07 3.54 6.04 -2.38 -0.01 3.53 16 Total: -1.00 -77.13 388.58 0.94 -76.19 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.58 Total: 18.98 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 5.30 Total: 13.54 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -6.52 Total: -127.34 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.71 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.78 Total: -3.74 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -77.13 0.94 -76.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.057 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds