Wall clock time and date at job start Wed Apr 1 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00188 * 2 1 4 4 H 1.48502 * 109.47131 * 274.06523 * 3 2 1 5 5 H 1.48503 * 109.46954 * 34.06396 * 3 2 1 6 6 H 1.48497 * 109.47190 * 154.06617 * 3 2 1 7 7 C 1.38815 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00503 * 197.52426 * 7 2 1 9 9 N 1.36938 * 119.99621 * 17.52490 * 7 2 1 10 10 C 1.46927 * 120.63139 * 207.99903 * 9 7 2 11 11 C 1.53197 * 108.77549 * 233.62980 * 10 9 7 12 12 C 1.53034 * 109.31322 * 305.36883 * 11 10 9 13 13 N 1.46505 * 109.45986 * 181.38630 * 12 11 10 14 14 C 1.34780 * 120.00139 * 154.99793 * 13 12 11 15 15 O 1.21589 * 119.99887 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99764 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99740 * 180.27477 * 16 14 13 18 18 H 1.09000 * 115.54779 * 350.39658 * 17 16 14 19 19 C 1.52996 * 117.49933 * 136.10074 * 17 16 14 20 20 C 1.52997 * 117.49905 * 204.72702 * 17 16 14 21 21 H 1.08993 * 117.50046 * 145.02238 * 20 17 16 22 22 C 1.50699 * 117.49690 * 0.02562 * 20 17 16 23 23 C 1.38262 * 119.99163 * 299.72838 * 22 20 17 24 24 C 1.38227 * 120.05316 * 179.76882 * 23 22 20 25 25 C 1.38220 * 120.02128 * 0.50768 * 24 23 22 26 26 C 1.38432 * 119.97718 * 359.74500 * 25 24 23 27 27 F 1.35101 * 120.02904 * 179.97438 * 26 25 24 28 28 C 1.38181 * 119.98417 * 120.00778 * 22 20 17 29 29 C 1.53042 * 109.54204 * 61.36356 * 12 11 10 30 30 C 1.46927 * 120.62808 * 28.02293 * 9 7 2 31 31 H 0.96997 * 119.99892 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.58375 * 113.84460 * 10 9 7 33 33 H 1.09001 * 109.58246 * 353.41644 * 10 9 7 34 34 H 1.08998 * 109.49958 * 185.40908 * 11 10 9 35 35 H 1.09008 * 109.49400 * 65.31941 * 11 10 9 36 36 H 1.09002 * 109.45710 * 301.35471 * 12 11 10 37 37 H 0.96995 * 119.99851 * 334.99707 * 13 12 11 38 38 H 0.96995 * 120.00227 * 359.97438 * 16 14 13 39 39 H 1.08998 * 117.50104 * 214.97991 * 19 17 16 40 40 H 1.09005 * 117.49766 * 359.97438 * 19 17 16 41 41 H 1.08007 * 119.97300 * 0.02562 * 23 22 20 42 42 H 1.08003 * 119.98648 * 180.25198 * 24 23 22 43 43 H 1.07999 * 120.00630 * 179.72680 * 25 24 23 44 44 H 1.07996 * 120.01183 * 359.97438 * 28 22 20 45 45 H 1.08994 * 109.49950 * 58.58673 * 29 12 11 46 46 H 1.08999 * 109.49674 * 178.68381 * 29 12 11 47 47 H 1.09001 * 109.58524 * 246.15352 * 30 9 7 48 48 H 1.08999 * 109.58932 * 6.43771 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4117 2.0960 -1.3966 5 1 1.4932 2.6263 0.7842 6 1 3.5880 1.4168 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0526 -1.2237 0.2821 9 7 1.3732 -2.3607 -0.3561 10 6 1.8145 -3.6542 0.1833 11 6 2.0773 -4.6112 -0.9837 12 6 0.8283 -4.6905 -1.8644 13 7 1.0647 -5.6304 -2.9631 14 6 0.0246 -6.2499 -3.5555 15 8 -1.1099 -6.0292 -3.1778 16 7 0.2420 -7.1141 -4.5665 17 6 -0.8890 -7.7830 -5.2145 18 1 -1.8535 -7.6585 -4.7223 19 6 -0.8803 -7.8650 -6.7422 20 6 -0.6167 -9.1197 -5.9072 21 1 -1.4022 -9.8745 -5.8711 22 6 0.7943 -9.6478 -5.8703 23 6 1.8227 -8.9114 -6.4285 24 6 3.1181 -9.3924 -6.3911 25 6 3.3850 -10.6152 -5.8047 26 6 2.3554 -11.3559 -5.2501 27 9 2.6151 -12.5515 -4.6772 28 6 1.0588 -10.8706 -5.2836 29 6 0.5164 -3.3057 -2.4363 30 6 0.2358 -2.3339 -1.2857 31 1 -0.4850 0.8400 -0.0004 32 1 1.0367 -4.0665 0.8259 33 1 2.7311 -3.5172 0.7571 34 1 2.3125 -5.6022 -0.5956 35 1 2.9162 -4.2429 -1.5744 36 1 -0.0159 -5.0351 -1.2670 37 1 1.9697 -5.8068 -3.2642 38 1 1.1470 -7.2900 -4.8681 39 1 -1.8393 -7.7944 -7.2555 40 1 -0.0333 -7.4209 -7.2653 41 1 1.6144 -7.9576 -6.8905 42 1 3.9212 -8.8143 -6.8239 43 1 4.3966 -10.9928 -5.7796 44 1 0.2548 -11.4476 -4.8513 45 1 1.3698 -2.9497 -3.0133 46 1 -0.3596 -3.3676 -3.0820 47 1 -0.6707 -2.6386 -0.7628 48 1 0.1091 -1.3253 -1.6792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609340753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:21 Heat of formation + Delta-G solvation = -21.649970 kcal Electronic energy + Delta-G solvation = -29921.091426 eV Core-core repulsion = 25697.845528 eV Total energy + Delta-G solvation = -4223.245898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.92301 -41.47692 -40.46824 -39.10449 -37.88044 -35.95004 -34.39191 -33.48827 -31.98327 -31.65524 -31.19576 -30.83760 -26.92512 -25.02237 -24.23095 -23.90149 -23.86372 -22.71041 -21.80802 -21.40030 -21.06197 -19.48306 -18.68806 -18.45742 -17.44726 -17.24824 -17.10964 -16.79570 -16.62267 -16.22771 -16.20511 -15.71021 -15.53133 -15.33928 -15.10244 -14.79577 -14.72353 -14.38027 -14.15261 -14.12215 -13.96650 -13.48652 -13.17542 -13.05990 -13.01863 -12.67202 -12.60769 -12.50974 -12.36236 -12.10477 -12.00948 -11.92129 -11.85088 -11.54829 -11.52916 -11.44131 -11.19900 -10.57612 -10.21529 -9.92576 -9.72507 -9.39273 -8.70832 -7.86339 -5.32530 0.11012 0.21715 1.48506 1.49698 1.59322 1.61910 2.07306 2.50537 2.52652 3.04514 3.16068 3.26692 3.31314 3.59986 3.68139 3.79457 3.82441 3.89255 3.97173 4.10021 4.11146 4.13815 4.29880 4.35535 4.45803 4.49308 4.68426 4.71239 4.81416 4.86607 4.89816 4.95526 5.06248 5.07257 5.09759 5.11930 5.14634 5.16664 5.33166 5.36367 5.46850 5.49798 5.55147 5.60513 5.65448 5.71121 5.91039 6.00957 6.39671 7.09143 7.14457 7.59800 7.85377 8.38317 9.20807 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017845 B = 0.002079 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.659099 B =13467.738491 C =14106.236737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.260 4.260 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.121 4.121 12 C 0.181 3.819 13 N -0.725 5.725 14 C 0.702 3.298 15 O -0.633 6.633 16 N -0.704 5.704 17 C 0.094 3.906 18 H 0.125 0.875 19 C -0.166 4.166 20 C -0.122 4.122 21 H 0.136 0.864 22 C -0.025 4.025 23 C -0.145 4.145 24 C -0.078 4.078 25 C -0.164 4.164 26 C 0.081 3.919 27 F -0.152 7.152 28 C -0.158 4.158 29 C -0.129 4.129 30 C 0.182 3.818 31 H 0.249 0.751 32 H 0.011 0.989 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.147 0.853 42 H 0.162 0.838 43 H 0.149 0.851 44 H 0.138 0.862 45 H 0.062 0.938 46 H 0.044 0.956 47 H -0.012 1.012 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 -23.304 -18.000 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.390 4.390 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.160 4.160 12 C 0.076 3.924 13 N -0.379 5.379 14 C 0.402 3.598 15 O -0.514 6.514 16 N -0.359 5.359 17 C -0.013 4.013 18 H 0.142 0.858 19 C -0.204 4.204 20 C -0.142 4.142 21 H 0.154 0.846 22 C -0.025 4.025 23 C -0.163 4.163 24 C -0.096 4.096 25 C -0.182 4.182 26 C 0.062 3.938 27 F -0.131 7.131 28 C -0.177 4.177 29 C -0.169 4.169 30 C 0.056 3.944 31 H 0.058 0.942 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.246 0.754 38 H 0.245 0.755 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.165 0.835 42 H 0.180 0.820 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.006 0.994 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.529 -23.020 -17.575 29.485 hybrid contribution 0.563 0.543 0.231 0.816 sum 6.092 -22.477 -17.344 29.037 Atomic orbital electron populations 1.70214 1.06921 1.25846 1.55481 1.25877 0.95988 1.01815 1.01337 0.85223 0.78293 0.79416 0.77341 1.21317 1.22519 1.18801 1.19583 0.93205 0.85842 1.40409 0.90812 1.44361 1.36244 1.02572 1.50088 1.21042 0.97863 0.85576 0.93966 1.22137 0.96316 1.00327 0.97255 1.20512 0.98362 0.87092 0.86465 1.45097 1.08608 1.46392 1.37814 1.16100 0.84640 0.79099 0.79962 1.90909 1.23135 1.69347 1.68038 1.44351 1.10124 1.45664 1.35788 1.21533 0.91022 0.95383 0.93334 0.85766 1.23772 1.05500 0.98407 0.92770 1.21704 0.94978 0.92133 1.05369 0.84641 1.18996 0.94266 0.93096 0.96191 1.21442 0.92484 1.01440 1.00892 1.21348 0.97480 0.94332 0.96413 1.21444 0.99424 0.96397 1.00957 1.17981 0.94870 0.82455 0.98495 1.91479 1.94896 1.43936 1.82782 1.21067 0.95653 0.97886 1.03113 1.22304 1.00307 0.95854 0.98437 1.20473 0.87874 0.97382 0.88708 0.94191 0.97116 0.91336 0.89264 0.90479 0.92695 0.75437 0.75457 0.85850 0.86772 0.83499 0.82004 0.83371 0.84446 0.91975 0.93696 0.99376 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.93 11.22 21.65 0.24 -56.69 16 2 C -0.06 -3.10 4.90 84.86 0.42 -2.68 16 3 Si 0.97 44.88 29.59 68.60 2.03 46.91 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.26 -14.20 9.58 84.03 0.81 -13.40 16 8 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 9 N -0.61 -30.68 2.99 -699.08 -2.09 -32.78 16 10 C 0.14 5.69 6.52 86.36 0.56 6.25 16 11 C -0.12 -3.70 5.55 30.67 0.17 -3.53 16 12 C 0.18 6.18 2.41 45.02 0.11 6.29 16 13 N -0.72 -19.03 5.08 -457.68 -2.33 -21.35 16 14 C 0.70 20.46 8.53 179.05 1.53 21.99 16 15 O -0.63 -24.94 15.57 -3.99 -0.06 -25.00 16 16 N -0.70 -13.93 5.33 -457.82 -2.44 -16.37 16 17 C 0.09 1.65 6.38 44.99 0.29 1.94 16 18 H 0.12 2.74 7.40 -2.39 -0.02 2.73 16 19 C -0.17 -1.79 9.79 30.59 0.30 -1.50 16 20 C -0.12 -1.47 6.04 -11.54 -0.07 -1.54 16 21 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 22 C -0.03 -0.32 5.17 -19.87 -0.10 -0.42 16 23 C -0.14 -1.41 7.47 22.27 0.17 -1.24 16 24 C -0.08 -0.67 10.04 22.26 0.22 -0.45 16 25 C -0.16 -1.94 10.03 22.31 0.22 -1.72 16 26 C 0.08 1.30 7.30 22.37 0.16 1.46 16 27 F -0.15 -2.91 17.27 44.97 0.78 -2.13 16 28 C -0.16 -2.37 9.72 22.31 0.22 -2.15 16 29 C -0.13 -5.18 5.65 30.67 0.17 -5.01 16 30 C 0.18 9.26 5.31 86.36 0.46 9.72 16 31 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 2.20 8.14 -2.38 -0.02 2.19 16 36 H 0.05 2.21 7.58 -2.39 -0.02 2.20 16 37 H 0.41 7.65 8.62 -92.71 -0.80 6.85 16 38 H 0.41 5.85 6.22 -92.71 -0.58 5.27 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 0.97 6.17 -2.38 -0.01 0.96 16 41 H 0.15 0.95 5.83 -2.91 -0.02 0.93 16 42 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 43 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 47 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 48 H 0.05 3.15 6.06 -2.39 -0.01 3.13 16 Total: -1.00 -74.60 390.08 1.38 -73.22 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.38 Total: 20.18 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.63 Total: 14.01 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -6.62 Total: -127.19 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.06 Total: -25.00 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -74.60 1.38 -73.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.570 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds