Wall clock time and date at job start Wed Apr 1 2020 04:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00251 * 2 1 4 4 H 1.48503 * 109.46993 * 240.00183 * 3 2 1 5 5 H 1.48494 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47391 * 120.00270 * 3 2 1 7 7 C 1.38815 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00040 * 163.79980 * 7 2 1 9 9 N 1.36937 * 120.00308 * 343.78809 * 7 2 1 10 10 C 1.46924 * 120.63175 * 331.88099 * 9 7 2 11 11 C 1.53187 * 108.77560 * 233.58414 * 10 9 7 12 12 C 1.53041 * 109.31107 * 305.35915 * 11 10 9 13 13 N 1.46501 * 109.46008 * 181.38481 * 12 11 10 14 14 C 1.34772 * 120.00160 * 155.00389 * 13 12 11 15 15 O 1.21593 * 119.99715 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00548 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00400 * 185.11730 * 16 14 13 18 18 C 1.50698 * 115.54898 * 294.98631 * 17 16 14 19 19 C 1.38275 * 119.98708 * 279.02928 * 18 17 16 20 20 C 1.38221 * 120.04734 * 179.72142 * 19 18 17 21 21 C 1.38213 * 120.03123 * 0.30075 * 20 19 18 22 22 C 1.38442 * 119.97450 * 359.96975 * 21 20 19 23 23 F 1.35096 * 120.02802 * 180.02562 * 22 21 20 24 24 C 1.38176 * 119.99005 * 99.29971 * 18 17 16 25 25 C 1.52994 * 117.50131 * 80.65870 * 17 16 14 26 26 C 1.53004 * 117.50000 * 149.31962 * 17 16 14 27 27 C 1.53049 * 109.53483 * 61.36988 * 12 11 10 28 28 C 1.46926 * 120.63010 * 151.85076 * 9 7 2 29 29 H 0.96998 * 119.99679 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.58846 * 113.79094 * 10 9 7 31 31 H 1.09004 * 109.70132 * 353.43830 * 10 9 7 32 32 H 1.09003 * 109.50073 * 185.41166 * 11 10 9 33 33 H 1.08999 * 109.52319 * 65.32984 * 11 10 9 34 34 H 1.08993 * 109.46373 * 301.36245 * 12 11 10 35 35 H 0.97004 * 119.99814 * 335.00257 * 13 12 11 36 36 H 0.97003 * 119.99855 * 5.10907 * 16 14 13 37 37 H 1.07994 * 119.97351 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.97919 * 180.27021 * 20 19 18 39 39 H 1.08000 * 120.01389 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.01231 * 0.02562 * 24 18 17 41 41 H 1.09008 * 117.50106 * 215.00542 * 25 17 16 42 42 H 1.09005 * 117.50019 * 0.02562 * 25 17 16 43 43 H 1.09002 * 117.49896 * 359.97411 * 26 17 16 44 44 H 1.09004 * 117.49722 * 144.97375 * 26 17 16 45 45 H 1.08997 * 109.49932 * 58.58187 * 27 12 11 46 46 H 1.09001 * 109.49727 * 178.68381 * 27 12 11 47 47 H 1.08994 * 109.58810 * 246.20450 * 28 9 7 48 48 H 1.09000 * 109.58487 * 6.48855 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0580 -1.2208 -0.2615 9 7 1.3663 -2.3647 0.3300 10 6 0.2120 -2.3487 1.2388 11 6 0.4705 -3.3356 2.3816 12 6 0.7916 -4.7133 1.7976 13 7 1.0070 -5.6675 2.8882 14 6 0.8060 -6.9840 2.6813 15 8 0.4463 -7.3798 1.5893 16 7 1.0036 -7.8619 3.6846 17 6 0.8945 -9.3006 3.4313 18 6 -0.4766 -9.7899 3.0418 19 6 -1.4309 -10.0198 4.0158 20 6 -2.6907 -10.4630 3.6594 21 6 -2.9961 -10.6829 2.3295 22 6 -2.0398 -10.4584 1.3540 23 9 -2.3373 -10.6724 0.0537 24 6 -0.7781 -10.0138 1.7121 25 6 2.0998 -10.0003 2.8002 26 6 1.7644 -10.2345 4.2752 27 6 2.0569 -4.6239 0.9412 28 6 1.8163 -3.6515 -0.2179 29 1 -0.4849 0.8401 -0.0004 30 1 -0.6850 -2.6456 0.6955 31 1 0.0780 -1.3462 1.6451 32 1 -0.4172 -3.4049 3.0103 33 1 1.3133 -2.9883 2.9792 34 1 -0.0415 -5.0493 1.1804 35 1 1.2942 -5.3518 3.7593 36 1 1.2182 -7.5410 4.5746 37 1 -1.1929 -9.8490 5.0552 38 1 -3.4365 -10.6381 4.4207 39 1 -3.9804 -11.0296 2.0515 40 1 -0.0311 -9.8388 0.9519 41 1 1.9011 -10.8144 2.1031 42 1 2.9743 -9.3901 2.5737 43 1 2.4182 -9.7784 5.0186 44 1 1.3448 -11.2026 4.5489 45 1 2.8849 -4.2641 1.5519 46 1 2.2982 -5.6101 0.5446 47 1 1.0501 -4.0547 -0.8800 48 1 2.7420 -3.5078 -0.7751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610100578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:01 Heat of formation + Delta-G solvation = -17.547059 kcal Electronic energy + Delta-G solvation = -30538.281457 eV Core-core repulsion = 26315.213475 eV Total energy + Delta-G solvation = -4223.067983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.91547 -41.48732 -40.25165 -39.03513 -37.84105 -35.89032 -34.31381 -33.32984 -31.83140 -31.71278 -31.31681 -30.89542 -26.94419 -24.94627 -24.11241 -24.02998 -23.75933 -22.88407 -22.17173 -21.19806 -20.81999 -19.37957 -18.71025 -18.55830 -17.31261 -17.17333 -17.04957 -16.85362 -16.62450 -16.36860 -16.18912 -15.71042 -15.48928 -15.36341 -15.10126 -14.81432 -14.71419 -14.35726 -14.24091 -14.09988 -13.89466 -13.27650 -13.21492 -12.99285 -12.77707 -12.58165 -12.54552 -12.42631 -12.24702 -12.19465 -12.04155 -11.91420 -11.83852 -11.55225 -11.44022 -11.35147 -11.07774 -10.55777 -10.21966 -9.92634 -9.73839 -9.65002 -8.71717 -7.88018 -5.34585 0.13587 0.27085 1.48626 1.50241 1.57725 1.64870 2.21390 2.51742 2.58893 2.77326 3.15526 3.27289 3.34355 3.55996 3.65853 3.83147 3.90213 3.97589 4.02379 4.06736 4.12528 4.29301 4.34189 4.45482 4.48374 4.52775 4.64205 4.74392 4.81135 4.84556 4.90980 4.99930 5.02914 5.06058 5.10933 5.15359 5.17995 5.20669 5.28484 5.34569 5.46313 5.51536 5.61496 5.63590 5.63971 5.69936 5.94373 6.06683 6.38429 7.13777 7.18910 7.69747 7.82963 8.36339 9.18979 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.002339 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.493840 B =11970.403975 C =12593.779141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.127 4.127 12 C 0.185 3.815 13 N -0.727 5.727 14 C 0.700 3.300 15 O -0.620 6.620 16 N -0.698 5.698 17 C 0.135 3.865 18 C -0.039 4.039 19 C -0.107 4.107 20 C -0.093 4.093 21 C -0.154 4.154 22 C 0.059 3.941 23 F -0.157 7.157 24 C -0.126 4.126 25 C -0.185 4.185 26 C -0.119 4.119 27 C -0.121 4.121 28 C 0.145 3.855 29 H 0.251 0.749 30 H -0.009 1.009 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.409 0.591 36 H 0.415 0.585 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.003 0.997 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 -24.230 17.256 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.167 4.167 12 C 0.079 3.921 13 N -0.382 5.382 14 C 0.400 3.600 15 O -0.500 6.500 16 N -0.354 5.354 17 C 0.047 3.953 18 C -0.041 4.041 19 C -0.126 4.126 20 C -0.111 4.111 21 C -0.173 4.173 22 C 0.040 3.960 23 F -0.136 7.136 24 C -0.145 4.145 25 C -0.224 4.224 26 C -0.156 4.156 27 C -0.161 4.161 28 C 0.019 3.981 29 H 0.060 0.940 30 H 0.009 0.991 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.245 0.755 36 H 0.253 0.747 37 H 0.176 0.824 38 H 0.186 0.814 39 H 0.168 0.832 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.021 0.979 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.177 -24.434 16.204 29.319 hybrid contribution 0.267 1.482 -0.622 1.629 sum 0.089 -22.952 15.582 27.742 Atomic orbital electron populations 1.70178 1.06728 1.26046 1.55284 1.25849 0.96079 1.01598 1.01004 0.85290 0.77498 0.78922 0.78399 1.20352 1.22019 1.19992 1.19503 0.92685 0.85722 1.41663 0.91462 1.44343 1.35023 1.02270 1.51582 1.20560 0.87448 0.97773 0.88918 1.22249 1.01893 0.93635 0.98873 1.20414 0.96665 0.87575 0.87426 1.45113 1.73215 1.04315 1.15554 1.16188 0.78063 0.81391 0.84378 1.90919 1.54443 1.78715 1.25911 1.44217 1.76322 1.03277 1.11617 1.18767 0.88794 0.79324 1.08384 1.19047 0.95151 0.98105 0.91787 1.21398 0.92488 0.98233 1.00441 1.21383 0.97328 0.97180 0.95163 1.21468 0.99627 1.02929 0.93261 1.18091 0.95540 1.04051 0.78295 1.91447 1.93848 1.92937 1.35383 1.21009 0.95491 1.00077 0.97958 1.23414 0.98394 1.02814 0.97750 1.23531 0.99055 0.99587 0.93474 1.22156 0.97918 0.98297 0.97760 1.20955 0.97184 0.86105 0.93894 0.93984 0.99113 0.91657 0.90639 0.90973 0.93174 0.75487 0.74672 0.82379 0.81432 0.83201 0.86997 0.88582 0.88884 0.85449 0.85693 0.91490 0.92557 0.97923 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.75 11.15 21.65 0.24 -55.50 16 2 C -0.05 -2.80 4.94 84.86 0.42 -2.38 16 3 Si 0.97 44.72 29.58 68.60 2.03 46.75 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.27 -14.77 9.59 84.03 0.81 -13.96 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 N -0.61 -31.35 2.99 -699.12 -2.09 -33.44 16 10 C 0.18 8.72 5.30 86.36 0.46 9.18 16 11 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 12 C 0.18 6.44 2.42 45.02 0.11 6.55 16 13 N -0.73 -19.01 5.08 -457.68 -2.33 -21.33 16 14 C 0.70 19.64 8.42 179.06 1.51 21.15 16 15 O -0.62 -23.49 14.22 -4.01 -0.06 -23.55 16 16 N -0.70 -12.74 5.45 -441.46 -2.41 -15.15 16 17 C 0.14 2.35 1.85 2.86 0.01 2.36 16 18 C -0.04 -0.82 4.78 -19.87 -0.10 -0.91 16 19 C -0.11 -1.60 9.70 22.27 0.22 -1.39 16 20 C -0.09 -1.32 10.04 22.26 0.22 -1.09 16 21 C -0.15 -2.96 10.03 22.31 0.22 -2.74 16 22 C 0.06 1.56 7.30 22.38 0.16 1.72 16 23 F -0.16 -4.69 17.27 44.97 0.78 -3.91 16 24 C -0.13 -3.40 8.14 22.31 0.18 -3.22 16 25 C -0.19 -3.11 9.79 30.62 0.30 -2.82 16 26 C -0.12 -1.10 10.13 30.62 0.31 -0.79 16 27 C -0.12 -4.46 5.65 30.67 0.17 -4.29 16 28 C 0.14 6.50 6.52 86.36 0.56 7.06 16 29 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.07 3.53 6.04 -2.38 -0.01 3.51 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 35 H 0.41 7.70 8.62 -92.71 -0.80 6.90 16 36 H 0.42 4.43 8.85 -92.71 -0.82 3.61 16 37 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 38 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.11 3.53 7.65 -2.91 -0.02 3.51 16 41 H 0.10 1.70 8.01 -2.38 -0.02 1.68 16 42 H 0.09 1.71 8.14 -2.38 -0.02 1.70 16 43 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -75.87 395.52 1.27 -74.60 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.63 Total: 21.49 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.73 Total: 10.04 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -6.58 Total: -125.43 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.06 Total: -23.55 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.78 Total: -3.91 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -75.87 1.27 -74.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610100578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.058 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds