Wall clock time and date at job start Wed Apr 1 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00105 * 2 1 4 4 H 1.48500 * 109.46871 * 264.98053 * 3 2 1 5 5 H 1.48503 * 109.47010 * 144.98142 * 3 2 1 6 6 H 1.48498 * 109.46858 * 24.98489 * 3 2 1 7 7 C 1.38817 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99881 * 162.49278 * 7 2 1 9 9 N 1.36936 * 119.99857 * 342.49527 * 7 2 1 10 10 C 1.46923 * 120.63133 * 332.47898 * 9 7 2 11 11 C 1.52762 * 109.00850 * 233.58986 * 10 9 7 12 12 C 1.53043 * 109.38024 * 305.58475 * 11 10 9 13 13 N 1.46497 * 109.45998 * 181.26229 * 12 11 10 14 14 C 1.34778 * 119.99837 * 84.93471 * 13 12 11 15 15 O 1.21583 * 120.00273 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99576 * 179.97438 * 14 13 12 17 17 C 1.47070 * 136.06159 * 359.62976 * 16 14 13 18 18 C 1.53756 * 87.88651 * 152.96273 * 17 16 14 19 19 C 1.47071 * 136.05482 * 179.97438 * 16 14 13 20 20 H 1.09003 * 113.46312 * 92.24898 * 19 16 14 21 21 C 1.50699 * 113.46814 * 321.87333 * 19 16 14 22 22 C 1.38273 * 119.98874 * 139.99906 * 21 19 16 23 23 C 1.38224 * 120.05048 * 179.97438 * 22 21 19 24 24 C 1.38217 * 120.02372 * 0.02562 * 23 22 21 25 25 C 1.38437 * 119.97714 * 359.97438 * 24 23 22 26 26 F 1.35102 * 120.02674 * 180.02562 * 25 24 23 27 27 C 1.38176 * 119.98414 * 319.72086 * 21 19 16 28 28 C 1.53044 * 109.53900 * 61.24120 * 12 11 10 29 29 C 1.46929 * 120.62929 * 152.75941 * 9 7 2 30 30 H 0.96998 * 119.99580 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.58337 * 353.41999 * 10 9 7 32 32 H 1.08994 * 109.59005 * 113.84431 * 10 9 7 33 33 H 1.08995 * 109.56398 * 185.55412 * 11 10 9 34 34 H 1.08992 * 109.39061 * 65.51038 * 11 10 9 35 35 H 1.09003 * 109.46359 * 301.22310 * 12 11 10 36 36 H 0.96998 * 120.00039 * 264.92810 * 13 12 11 37 37 H 1.09004 * 113.46267 * 267.69247 * 17 16 14 38 38 H 1.08999 * 113.46388 * 38.13449 * 17 16 14 39 39 H 1.09003 * 114.39457 * 272.67259 * 18 17 16 40 40 H 1.09006 * 114.08859 * 139.78326 * 18 17 16 41 41 H 1.07996 * 119.97113 * 359.97438 * 22 21 19 42 42 H 1.07997 * 119.98611 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.01000 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.01507 * 0.02562 * 27 21 19 45 45 H 1.09000 * 109.49968 * 178.68428 * 28 12 11 46 46 H 1.08996 * 109.49591 * 58.58466 * 28 12 11 47 47 H 1.09001 * 109.58510 * 246.15468 * 29 9 7 48 48 H 1.08999 * 109.58643 * 6.58363 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6038 1.9851 -1.3947 5 1 3.4907 1.4731 0.8034 6 1 1.3987 2.6809 0.5914 7 6 2.0103 -1.2022 0.0005 8 1 3.0527 -1.2239 -0.2808 9 7 1.3731 -2.3605 0.3578 10 6 0.2285 -2.3319 1.2785 11 6 0.4957 -3.2942 2.4344 12 6 0.8189 -4.6818 1.8757 13 7 1.0459 -5.6132 2.9835 14 6 0.0012 -6.2324 3.5681 15 8 -1.1296 -6.0176 3.1765 16 7 0.2101 -7.0896 4.5869 17 6 1.3794 -7.6016 5.3173 18 6 0.4577 -7.8145 6.5294 19 6 -0.6306 -7.9295 5.4535 20 1 -0.7648 -8.9436 5.0770 21 6 -1.9314 -7.2760 5.8434 22 6 -3.0943 -8.0228 5.8868 23 6 -4.2879 -7.4249 6.2448 24 6 -4.3204 -6.0794 6.5593 25 6 -3.1568 -5.3306 6.5162 26 9 -3.1873 -4.0155 6.8239 27 6 -1.9604 -5.9320 6.1630 28 6 2.0778 -4.6041 1.0089 29 6 1.8250 -3.6561 -0.1676 30 1 -0.4849 0.8401 0.0004 31 1 0.0981 -1.3222 1.6681 32 1 -0.6733 -2.6412 0.7502 33 1 -0.3874 -3.3547 3.0704 34 1 1.3410 -2.9315 3.0191 35 1 -0.0171 -5.0337 1.2712 36 1 1.9480 -5.7844 3.2961 37 1 1.7762 -8.5296 4.9055 38 1 2.1508 -6.8497 5.4834 39 1 0.3562 -6.9431 7.1763 40 1 0.6466 -8.7392 7.0750 41 1 -3.0698 -9.0741 5.6408 42 1 -5.1955 -8.0093 6.2787 43 1 -5.2534 -5.6123 6.8386 44 1 -1.0513 -5.3498 6.1330 45 1 2.3207 -5.5970 0.6303 46 1 2.9084 -4.2288 1.6065 47 1 1.0560 -4.0756 -0.8163 48 1 2.7476 -3.5199 -0.7318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610351021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:32 Heat of formation + Delta-G solvation = 17.888320 kcal Electronic energy + Delta-G solvation = -30930.662586 eV Core-core repulsion = 26709.131196 eV Total energy + Delta-G solvation = -4221.531389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.88439 -41.00309 -39.08961 -38.16166 -36.98122 -34.30113 -32.28267 -31.56620 -30.66881 -30.27854 -29.77824 -28.72359 -26.13650 -24.90089 -23.14229 -22.61886 -22.17025 -22.13137 -21.26017 -19.69257 -19.10474 -18.09527 -17.59928 -16.73261 -16.42721 -16.30246 -15.89978 -15.64369 -15.57460 -14.90621 -14.49245 -14.41059 -14.00904 -13.91952 -13.74421 -13.46931 -13.43830 -13.03242 -12.95369 -12.83467 -12.55878 -12.39571 -12.23716 -12.02258 -11.80370 -11.68023 -11.45207 -11.08991 -10.90241 -10.80654 -10.68266 -10.34739 -10.22853 -10.04507 -9.91878 -9.71401 -9.53149 -9.08140 -8.92282 -8.76496 -8.54338 -8.33825 -6.65777 -5.75002 -3.17250 0.95534 1.10627 2.49158 3.38507 3.39944 3.44249 3.46732 3.48682 3.97486 4.05265 4.12214 4.43577 4.52359 4.57167 4.68755 4.86486 4.88510 5.03052 5.04863 5.12767 5.24742 5.31998 5.35612 5.40265 5.48932 5.49628 5.64692 5.68370 5.75511 5.87568 5.91086 6.02369 6.12440 6.13623 6.26897 6.29396 6.42086 6.50963 6.65262 6.68695 6.76635 6.83086 6.95923 7.02774 7.29145 7.44539 7.72947 7.82569 8.17474 8.48079 8.82086 9.24204 9.87985 10.44512 11.33544 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.002802 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.716608 B = 9992.040261 C =11267.364125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.170 3.830 13 N -0.736 5.736 14 C 0.730 3.270 15 O -0.574 6.574 16 N -0.665 5.665 17 C 0.097 3.903 18 C -0.146 4.146 19 C 0.193 3.807 20 H 0.100 0.900 21 C -0.059 4.059 22 C -0.117 4.117 23 C -0.094 4.094 24 C -0.152 4.152 25 C 0.099 3.901 26 F -0.139 7.139 27 C -0.114 4.114 28 C -0.138 4.138 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.389 0.611 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.129 0.871 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.020 0.980 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.851 -21.139 16.660 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.066 3.934 13 N -0.390 5.390 14 C 0.433 3.567 15 O -0.451 6.451 16 N -0.407 5.407 17 C -0.026 4.026 18 C -0.184 4.184 19 C 0.089 3.911 20 H 0.118 0.882 21 C -0.060 4.060 22 C -0.136 4.136 23 C -0.113 4.113 24 C -0.171 4.171 25 C 0.080 3.920 26 F -0.118 7.118 27 C -0.133 4.133 28 C -0.178 4.178 29 C 0.022 3.978 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.221 0.779 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.147 0.853 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.038 0.962 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.842 -20.570 16.115 26.195 hybrid contribution 0.834 1.067 0.082 1.357 sum -1.008 -19.503 16.197 25.372 Atomic orbital electron populations 1.70041 1.05270 1.25558 1.53543 1.25043 0.95252 0.98422 1.00921 0.86339 0.79089 0.83689 0.77778 1.21330 1.20615 1.21559 1.19143 0.92713 0.84918 1.41672 0.91691 1.44094 1.35803 1.01250 1.50378 1.20666 0.88617 0.98296 0.87661 1.22496 1.00381 0.95220 1.00516 1.20917 0.98490 0.88342 0.85631 1.45485 1.07699 1.47859 1.37911 1.15375 0.85197 0.78361 0.77777 1.90965 1.21594 1.67665 1.64829 1.48964 1.10142 1.45619 1.35975 1.22939 0.90918 0.99189 0.89545 1.23615 0.95061 1.03869 0.95812 1.21377 0.88777 0.93414 0.87563 0.88208 1.19581 0.94973 0.93270 0.98195 1.21008 0.91877 1.00172 1.00513 1.20918 0.98153 0.93870 0.98316 1.21152 0.97390 0.95014 1.03547 1.17682 0.94836 0.78224 1.01268 1.91516 1.97265 1.32446 1.90548 1.20822 0.97219 0.95196 1.00102 1.22342 0.96707 0.99650 0.99075 1.20832 0.97926 0.86744 0.92296 0.93577 0.89276 0.96214 0.92880 0.92900 0.90150 0.77886 0.89835 0.90405 0.88411 0.88854 0.85438 0.85049 0.84889 0.85323 0.92725 0.91959 0.96188 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 11.18 55.49 0.62 -26.21 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -7.08 9.59 -15.06 -0.14 -7.22 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -15.14 3.00 -172.58 -0.52 -15.66 16 10 C 0.17 4.39 5.29 -3.93 -0.02 4.37 16 11 C -0.15 -3.06 5.64 -26.83 -0.15 -3.22 16 12 C 0.17 3.11 2.42 -67.89 -0.16 2.95 16 13 N -0.74 -11.11 5.08 -58.63 -0.30 -11.41 16 14 C 0.73 11.75 8.33 -86.92 -0.72 11.02 16 15 O -0.57 -11.86 15.79 5.29 0.08 -11.77 16 16 N -0.67 -7.62 3.16 -184.40 -0.58 -8.21 16 17 C 0.10 0.65 8.29 -8.37 -0.07 0.59 16 18 C -0.15 -0.85 7.93 -26.09 -0.21 -1.06 16 19 C 0.19 1.74 4.24 -73.55 -0.31 1.42 16 20 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 21 C -0.06 -0.66 4.79 -104.63 -0.50 -1.16 16 22 C -0.12 -1.12 9.71 -39.57 -0.38 -1.50 16 23 C -0.09 -0.89 10.04 -39.59 -0.40 -1.29 16 24 C -0.15 -1.70 10.03 -39.52 -0.40 -2.09 16 25 C 0.10 1.35 7.30 -39.42 -0.29 1.06 16 26 F -0.14 -2.10 17.27 2.25 0.04 -2.06 16 27 C -0.11 -1.52 8.07 -39.51 -0.32 -1.84 16 28 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 29 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 30 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.09 2.51 6.03 -51.93 -0.31 2.19 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 36 H 0.39 4.74 8.32 -40.82 -0.34 4.40 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.65 7.63 -51.93 -0.40 0.25 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.13 0.87 8.05 -52.49 -0.42 0.44 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 44 H 0.13 1.81 7.81 -52.49 -0.41 1.40 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -34.92 392.03 -11.42 -46.33 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.31 Total: 3.51 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -4.34 Total: 2.63 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.78 Total: -61.48 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.92 -11.42 -46.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610351021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.222 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds