Wall clock time and date at job start Wed Apr 1 2020 04:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99897 * 2 1 4 4 H 1.48497 * 109.47352 * 270.72922 * 3 2 1 5 5 H 1.48502 * 109.47073 * 30.72997 * 3 2 1 6 6 H 1.48498 * 109.47327 * 150.72995 * 3 2 1 7 7 C 1.38816 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99887 * 345.79586 * 7 2 1 9 9 N 1.36932 * 119.99787 * 165.79109 * 7 2 1 10 10 C 1.46927 * 120.63606 * 327.97575 * 9 7 2 11 11 C 1.53194 * 108.77629 * 233.58922 * 10 9 7 12 12 C 1.53046 * 109.30923 * 305.36157 * 11 10 9 13 13 N 1.46504 * 109.45742 * 181.38667 * 12 11 10 14 14 C 1.34778 * 119.99717 * 154.97451 * 13 12 11 15 15 O 1.21586 * 120.00062 * 4.94634 * 14 13 12 16 16 N 1.34772 * 119.99626 * 184.95650 * 14 13 12 17 17 C 1.47229 * 121.33620 * 174.83464 * 16 14 13 18 18 C 1.52785 * 107.92119 * 115.80076 * 17 16 14 19 19 C 1.50605 * 110.86128 * 47.45615 * 18 17 16 20 20 C 1.38944 * 117.59080 * 160.54954 * 19 18 17 21 21 C 1.38132 * 120.56573 * 178.75432 * 20 19 18 22 22 F 1.35092 * 120.11802 * 180.02562 * 21 20 19 23 23 C 1.38490 * 119.76509 * 0.04030 * 21 20 19 24 24 C 1.37919 * 119.69306 * 0.26374 * 23 21 20 25 25 C 1.37685 * 122.85957 * 339.81318 * 19 18 17 26 26 C 1.46679 * 121.33946 * 354.85579 * 16 14 13 27 27 C 1.53042 * 109.52918 * 61.37281 * 12 11 10 28 28 C 1.46932 * 120.62958 * 147.95008 * 9 7 2 29 29 H 0.96993 * 120.00053 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58978 * 113.79823 * 10 9 7 31 31 H 1.08999 * 109.69814 * 353.43930 * 10 9 7 32 32 H 1.09000 * 109.49612 * 185.40977 * 11 10 9 33 33 H 1.09000 * 109.49779 * 65.30746 * 11 10 9 34 34 H 1.08994 * 109.45794 * 301.35665 * 12 11 10 35 35 H 0.96998 * 119.99937 * 334.97291 * 13 12 11 36 36 H 1.09009 * 109.76993 * 356.19558 * 17 16 14 37 37 H 1.08997 * 109.76877 * 235.40613 * 17 16 14 38 38 H 1.08999 * 109.20168 * 287.10132 * 18 17 16 39 39 H 1.08996 * 109.19884 * 167.81068 * 18 17 16 40 40 H 1.08000 * 119.72306 * 358.77142 * 20 19 18 41 41 H 1.08003 * 120.15285 * 180.24693 * 23 21 20 42 42 H 1.08000 * 119.72513 * 179.97438 * 24 23 21 43 43 H 1.08996 * 109.43974 * 104.36436 * 26 16 14 44 44 H 1.09006 * 109.43568 * 344.48794 * 26 16 14 45 45 H 1.09002 * 109.49469 * 58.57879 * 27 12 11 46 46 H 1.08991 * 109.49711 * 178.67584 * 27 12 11 47 47 H 1.09002 * 109.58941 * 246.20176 * 28 9 7 48 48 H 1.09001 * 109.58451 * 6.62922 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4822 2.0554 -1.3999 5 1 1.4554 2.6482 0.7154 6 1 3.5553 1.4358 0.6845 7 6 2.0103 -1.2022 -0.0005 8 1 1.4951 -2.1232 0.2285 9 7 3.3482 -1.2201 -0.2916 10 6 3.9230 -0.2482 -1.2318 11 6 4.6919 -1.0077 -2.3174 12 6 5.7211 -1.9289 -1.6582 13 7 6.4810 -2.6323 -2.6946 14 6 7.7223 -3.0855 -2.4293 15 8 8.1768 -2.9909 -1.3056 16 7 8.4598 -3.6432 -3.4098 17 6 9.8576 -4.0455 -3.1821 18 6 9.9409 -5.5634 -3.3349 19 6 9.2346 -6.0161 -4.5856 20 6 9.5570 -7.2706 -5.0885 21 6 8.9279 -7.7576 -6.2176 22 9 9.2479 -8.9788 -6.6985 23 6 7.9681 -6.9894 -6.8553 24 6 7.6522 -5.7415 -6.3603 25 6 8.2874 -5.2502 -5.2275 26 6 7.9022 -3.8735 -4.7468 27 6 5.0017 -2.9489 -0.7726 28 6 4.2365 -2.2113 0.3307 29 1 -0.4850 0.8400 0.0004 30 1 4.6031 0.4168 -0.6996 31 1 3.1249 0.3359 -1.6901 32 1 5.2030 -0.2965 -2.9663 33 1 3.9954 -1.6036 -2.9072 34 1 6.4020 -1.3350 -1.0486 35 1 6.0908 -2.7719 -3.5716 36 1 10.1646 -3.7587 -2.1762 37 1 10.5038 -3.5650 -3.9166 38 1 9.4766 -6.0368 -2.4697 39 1 10.9880 -5.8615 -3.3866 40 1 10.3056 -7.8702 -4.5921 41 1 7.4694 -7.3657 -7.7363 42 1 6.9041 -5.1418 -6.8573 43 1 8.2933 -3.1258 -5.4367 44 1 6.8158 -3.7948 -4.7052 45 1 4.3022 -3.5262 -1.3772 46 1 5.7333 -3.6193 -0.3219 47 1 4.9423 -1.7064 0.9903 48 1 3.6437 -2.9244 0.9036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611258150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:44 Heat of formation + Delta-G solvation = -17.385483 kcal Electronic energy + Delta-G solvation = -30486.651542 eV Core-core repulsion = 26263.590565 eV Total energy + Delta-G solvation = -4223.060976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.27376 -40.92934 -39.56468 -37.85169 -36.13429 -34.70321 -33.51188 -32.11355 -31.38582 -30.46629 -30.29258 -29.41183 -26.04489 -25.02647 -24.09560 -23.00997 -22.89364 -21.96490 -21.24070 -19.85791 -19.43481 -18.30845 -17.62557 -16.93843 -16.80796 -16.45107 -16.07211 -15.91781 -15.35992 -15.34331 -14.87510 -14.65895 -14.21134 -14.15766 -14.12730 -13.82902 -13.78715 -13.62902 -13.24594 -12.95352 -12.83299 -12.72083 -12.43142 -12.34838 -11.99654 -11.93900 -11.76572 -11.67642 -11.16993 -10.96239 -10.85054 -10.53087 -10.29131 -10.22428 -10.01974 -9.73611 -9.50684 -9.38133 -9.09842 -8.90915 -8.65987 -8.63949 -6.92190 -5.94449 -3.37264 0.66610 0.74468 2.45745 3.04920 3.16044 3.29616 3.47542 3.50375 3.78369 3.81079 4.12387 4.17292 4.36466 4.51530 4.61779 4.64630 4.77710 4.85801 4.98023 5.03651 5.04677 5.12945 5.15949 5.32937 5.37171 5.42374 5.45765 5.50125 5.66287 5.66911 5.69655 5.77889 5.83397 6.00468 6.04575 6.09941 6.13219 6.18767 6.34118 6.42300 6.43961 6.56274 6.65162 6.66990 6.74473 6.83492 6.98836 7.89824 8.00703 8.34753 8.56946 8.94116 9.70921 10.10410 11.21681 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002237 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.434976 B =12513.582344 C =13058.345387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.023 3.977 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.607 5.607 10 C 0.128 3.872 11 C -0.140 4.140 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.711 3.289 15 O -0.584 6.584 16 N -0.635 5.635 17 C 0.131 3.869 18 C -0.101 4.101 19 C -0.035 4.035 20 C -0.156 4.156 21 C 0.100 3.900 22 F -0.140 7.140 23 C -0.155 4.155 24 C -0.082 4.082 25 C -0.106 4.106 26 C 0.155 3.845 27 C -0.142 4.142 28 C 0.151 3.849 29 H 0.263 0.737 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.391 0.609 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.026 0.974 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.396 -11.753 -15.400 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.720 3.280 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.388 4.388 8 H 0.102 0.898 9 N -0.331 5.331 10 C 0.001 3.999 11 C -0.180 4.180 12 C 0.065 3.935 13 N -0.394 5.394 14 C 0.413 3.587 15 O -0.461 6.461 16 N -0.373 5.373 17 C 0.008 3.992 18 C -0.138 4.138 19 C -0.035 4.035 20 C -0.175 4.175 21 C 0.081 3.919 22 F -0.119 7.119 23 C -0.174 4.174 24 C -0.100 4.100 25 C -0.108 4.108 26 C 0.031 3.969 27 C -0.182 4.182 28 C 0.025 3.975 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.226 0.774 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.044 0.956 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.555 -11.588 -14.515 28.453 hybrid contribution 0.187 0.427 -0.821 0.944 sum 21.742 -11.161 -15.336 28.853 Atomic orbital electron populations 1.69775 1.05716 1.26549 1.53607 1.25409 0.95308 0.97763 0.99099 0.86869 0.79826 0.84179 0.77088 1.21595 1.23204 1.19319 1.18923 0.82090 0.94162 1.43603 0.89787 1.44378 1.05575 1.35864 1.47319 1.21356 0.96237 0.92173 0.90113 1.22359 0.97449 0.98648 0.99554 1.20875 0.91936 0.92661 0.88047 1.45628 1.15062 1.61657 1.17010 1.15787 0.80956 0.78127 0.83816 1.90921 1.72184 1.62969 1.20066 1.47206 1.13343 1.66043 1.10753 1.21426 0.81060 0.92872 1.03861 1.20922 1.00685 0.97124 0.95114 1.19344 0.95411 0.92799 0.95955 1.21171 1.02582 0.97060 0.96688 1.17621 0.97753 0.81464 0.95070 1.91507 1.91820 1.40976 1.87579 1.21081 0.98999 0.95385 1.01919 1.20922 0.98953 0.95011 0.95147 1.19853 0.97664 0.96778 0.96457 1.20359 0.99147 0.92908 0.84440 1.22396 0.98893 0.98148 0.98756 1.20916 0.92303 0.91660 0.92662 0.92745 0.95321 0.90619 0.92292 0.91257 0.89980 0.77389 0.87946 0.90994 0.89415 0.89251 0.84697 0.84489 0.84563 0.89914 0.89133 0.92067 0.92109 0.95643 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.87 13.97 55.49 0.78 -27.09 16 2 C 0.02 0.66 5.32 -17.43 -0.09 0.57 16 3 Si 0.89 22.26 24.29 -169.99 -4.13 18.14 16 4 H -0.29 -6.87 6.62 56.52 0.37 -6.50 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.61 6.41 56.52 0.36 -6.25 16 7 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.61 -14.28 2.73 -172.32 -0.47 -14.76 16 10 C 0.13 2.69 4.16 -3.71 -0.02 2.68 16 11 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 12 C 0.17 2.69 2.38 -67.88 -0.16 2.53 16 13 N -0.74 -9.57 4.98 -58.63 -0.29 -9.87 16 14 C 0.71 9.86 8.28 -86.92 -0.72 9.14 16 15 O -0.58 -10.36 15.51 5.29 0.08 -10.27 16 16 N -0.64 -6.44 2.93 -180.12 -0.53 -6.97 16 17 C 0.13 1.11 6.43 -3.75 -0.02 1.08 16 18 C -0.10 -0.73 5.86 -28.04 -0.16 -0.89 16 19 C -0.03 -0.28 5.76 -104.61 -0.60 -0.88 16 20 C -0.16 -1.24 9.57 -39.36 -0.38 -1.61 16 21 C 0.10 0.86 7.30 -39.53 -0.29 0.57 16 22 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 23 C -0.16 -1.13 10.04 -39.61 -0.40 -1.52 16 24 C -0.08 -0.54 9.62 -39.47 -0.38 -0.92 16 25 C -0.11 -0.81 5.82 -104.54 -0.61 -1.42 16 26 C 0.16 1.14 6.07 -5.04 -0.03 1.11 16 27 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 28 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.03 0.61 6.84 -51.93 -0.35 0.25 16 31 H 0.08 1.73 4.63 -51.93 -0.24 1.49 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.46 7.65 -51.93 -0.40 1.06 16 35 H 0.39 4.01 6.26 -40.82 -0.26 3.75 16 36 H 0.10 1.01 7.09 -51.92 -0.37 0.64 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.45 8.11 -51.93 -0.42 0.03 16 40 H 0.14 0.87 8.05 -52.49 -0.42 0.44 16 41 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.14 0.58 8.05 -52.49 -0.42 0.16 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.59 5.97 -51.93 -0.31 0.28 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -33.64 376.28 -10.22 -43.86 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.03 Total: 1.53 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.34 Total: 1.05 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.52 Total: -58.69 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.13 Total: 18.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.64 -10.22 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611258150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.473 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds