Wall clock time and date at job start Wed Apr 1 2020 04:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99897 * 2 1 4 4 H 1.48497 * 109.47352 * 270.72922 * 3 2 1 5 5 H 1.48502 * 109.47073 * 30.72997 * 3 2 1 6 6 H 1.48498 * 109.47327 * 150.72995 * 3 2 1 7 7 C 1.38816 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99887 * 345.79586 * 7 2 1 9 9 N 1.36932 * 119.99787 * 165.79109 * 7 2 1 10 10 C 1.46927 * 120.63606 * 327.97575 * 9 7 2 11 11 C 1.53194 * 108.77629 * 233.58922 * 10 9 7 12 12 C 1.53046 * 109.30923 * 305.36157 * 11 10 9 13 13 N 1.46504 * 109.45742 * 181.38667 * 12 11 10 14 14 C 1.34778 * 119.99717 * 154.97451 * 13 12 11 15 15 O 1.21586 * 120.00062 * 4.94634 * 14 13 12 16 16 N 1.34772 * 119.99626 * 184.95650 * 14 13 12 17 17 C 1.47229 * 121.33620 * 174.83464 * 16 14 13 18 18 C 1.52785 * 107.92119 * 115.80076 * 17 16 14 19 19 C 1.50605 * 110.86128 * 47.45615 * 18 17 16 20 20 C 1.38944 * 117.59080 * 160.54954 * 19 18 17 21 21 C 1.38132 * 120.56573 * 178.75432 * 20 19 18 22 22 F 1.35092 * 120.11802 * 180.02562 * 21 20 19 23 23 C 1.38490 * 119.76509 * 0.04030 * 21 20 19 24 24 C 1.37919 * 119.69306 * 0.26374 * 23 21 20 25 25 C 1.37685 * 122.85957 * 339.81318 * 19 18 17 26 26 C 1.46679 * 121.33946 * 354.85579 * 16 14 13 27 27 C 1.53042 * 109.52918 * 61.37281 * 12 11 10 28 28 C 1.46932 * 120.62958 * 147.95008 * 9 7 2 29 29 H 0.96993 * 120.00053 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58978 * 113.79823 * 10 9 7 31 31 H 1.08999 * 109.69814 * 353.43930 * 10 9 7 32 32 H 1.09000 * 109.49612 * 185.40977 * 11 10 9 33 33 H 1.09000 * 109.49779 * 65.30746 * 11 10 9 34 34 H 1.08994 * 109.45794 * 301.35665 * 12 11 10 35 35 H 0.96998 * 119.99937 * 334.97291 * 13 12 11 36 36 H 1.09009 * 109.76993 * 356.19558 * 17 16 14 37 37 H 1.08997 * 109.76877 * 235.40613 * 17 16 14 38 38 H 1.08999 * 109.20168 * 287.10132 * 18 17 16 39 39 H 1.08996 * 109.19884 * 167.81068 * 18 17 16 40 40 H 1.08000 * 119.72306 * 358.77142 * 20 19 18 41 41 H 1.08003 * 120.15285 * 180.24693 * 23 21 20 42 42 H 1.08000 * 119.72513 * 179.97438 * 24 23 21 43 43 H 1.08996 * 109.43974 * 104.36436 * 26 16 14 44 44 H 1.09006 * 109.43568 * 344.48794 * 26 16 14 45 45 H 1.09002 * 109.49469 * 58.57879 * 27 12 11 46 46 H 1.08991 * 109.49711 * 178.67584 * 27 12 11 47 47 H 1.09002 * 109.58941 * 246.20176 * 28 9 7 48 48 H 1.09001 * 109.58451 * 6.62922 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4822 2.0554 -1.3999 5 1 1.4554 2.6482 0.7154 6 1 3.5553 1.4358 0.6845 7 6 2.0103 -1.2022 -0.0005 8 1 1.4951 -2.1232 0.2285 9 7 3.3482 -1.2201 -0.2916 10 6 3.9230 -0.2482 -1.2318 11 6 4.6919 -1.0077 -2.3174 12 6 5.7211 -1.9289 -1.6582 13 7 6.4810 -2.6323 -2.6946 14 6 7.7223 -3.0855 -2.4293 15 8 8.1768 -2.9909 -1.3056 16 7 8.4598 -3.6432 -3.4098 17 6 9.8576 -4.0455 -3.1821 18 6 9.9409 -5.5634 -3.3349 19 6 9.2346 -6.0161 -4.5856 20 6 9.5570 -7.2706 -5.0885 21 6 8.9279 -7.7576 -6.2176 22 9 9.2479 -8.9788 -6.6985 23 6 7.9681 -6.9894 -6.8553 24 6 7.6522 -5.7415 -6.3603 25 6 8.2874 -5.2502 -5.2275 26 6 7.9022 -3.8735 -4.7468 27 6 5.0017 -2.9489 -0.7726 28 6 4.2365 -2.2113 0.3307 29 1 -0.4850 0.8400 0.0004 30 1 4.6031 0.4168 -0.6996 31 1 3.1249 0.3359 -1.6901 32 1 5.2030 -0.2965 -2.9663 33 1 3.9954 -1.6036 -2.9072 34 1 6.4020 -1.3350 -1.0486 35 1 6.0908 -2.7719 -3.5716 36 1 10.1646 -3.7587 -2.1762 37 1 10.5038 -3.5650 -3.9166 38 1 9.4766 -6.0368 -2.4697 39 1 10.9880 -5.8615 -3.3866 40 1 10.3056 -7.8702 -4.5921 41 1 7.4694 -7.3657 -7.7363 42 1 6.9041 -5.1418 -6.8573 43 1 8.2933 -3.1258 -5.4367 44 1 6.8158 -3.7948 -4.7052 45 1 4.3022 -3.5262 -1.3772 46 1 5.7333 -3.6193 -0.3219 47 1 4.9423 -1.7064 0.9903 48 1 3.6437 -2.9244 0.9036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611258150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:43 Heat of formation + Delta-G solvation = -37.961416 kcal Electronic energy + Delta-G solvation = -30487.543781 eV Core-core repulsion = 26263.590565 eV Total energy + Delta-G solvation = -4223.953216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.92263 -41.75256 -40.43423 -39.25148 -37.00339 -36.08747 -34.43811 -33.73398 -32.19490 -31.96490 -31.57025 -30.27661 -27.08336 -26.33111 -24.97567 -24.42182 -23.66511 -23.31977 -22.17192 -21.25041 -20.46456 -19.29693 -18.62726 -18.25851 -17.73651 -17.34909 -17.09473 -16.73402 -16.59207 -16.17372 -15.93186 -15.82988 -15.56930 -15.32904 -15.02839 -15.02378 -14.72006 -14.47032 -14.39240 -14.24798 -14.17565 -13.79532 -13.60833 -13.44781 -13.24172 -13.05924 -12.61092 -12.58104 -12.45657 -12.25038 -12.22816 -11.99918 -11.76212 -11.73341 -11.52308 -11.40943 -11.23409 -10.71546 -10.19244 -9.90679 -9.61519 -9.44410 -8.88058 -8.14567 -5.54359 0.09457 0.21289 1.30941 1.44440 1.52840 1.56539 2.12084 2.42761 2.50074 2.89203 3.11834 3.22362 3.31854 3.54990 3.64557 3.79201 3.83354 4.01192 4.07217 4.10255 4.23558 4.25831 4.26925 4.34125 4.50166 4.51157 4.51585 4.59326 4.64938 4.71614 4.81821 4.83542 4.90645 4.94637 4.95923 5.06355 5.09059 5.10198 5.15011 5.18356 5.23543 5.39050 5.45706 5.48607 5.57389 5.86520 5.91291 5.97228 6.15294 6.93012 6.95638 7.55335 7.61317 8.03665 9.05357 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002237 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.434976 B =12513.582344 C =13058.345387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.034 4.034 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.313 1.313 6 H -0.262 1.262 7 C -0.249 4.249 8 H 0.049 0.951 9 N -0.620 5.620 10 C 0.119 3.881 11 C -0.126 4.126 12 C 0.180 3.820 13 N -0.727 5.727 14 C 0.708 3.292 15 O -0.628 6.628 16 N -0.630 5.630 17 C 0.128 3.872 18 C -0.094 4.094 19 C -0.047 4.047 20 C -0.162 4.162 21 C 0.079 3.921 22 F -0.151 7.151 23 C -0.159 4.159 24 C -0.078 4.078 25 C -0.112 4.112 26 C 0.152 3.848 27 C -0.128 4.128 28 C 0.148 3.852 29 H 0.262 0.738 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.407 0.593 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.143 0.857 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.423 -11.146 -17.853 31.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.229 4.229 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.243 1.243 6 H -0.187 1.187 7 C -0.379 4.379 8 H 0.066 0.934 9 N -0.345 5.345 10 C -0.006 4.006 11 C -0.165 4.165 12 C 0.075 3.925 13 N -0.383 5.383 14 C 0.410 3.590 15 O -0.509 6.509 16 N -0.367 5.367 17 C 0.005 3.995 18 C -0.132 4.132 19 C -0.047 4.047 20 C -0.181 4.181 21 C 0.060 3.940 22 F -0.130 7.130 23 C -0.177 4.177 24 C -0.097 4.097 25 C -0.113 4.113 26 C 0.030 3.970 27 C -0.168 4.168 28 C 0.022 3.978 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.245 0.755 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.182 0.818 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 23.638 -11.018 -17.044 31.156 hybrid contribution -0.407 0.104 -0.061 0.424 sum 23.232 -10.914 -17.106 30.845 Atomic orbital electron populations 1.69915 1.07443 1.27288 1.56061 1.26056 0.95931 1.01225 0.99681 0.85845 0.78311 0.79566 0.78139 1.19133 1.24252 1.18655 1.18822 0.83958 0.92885 1.42192 0.93365 1.44475 1.04431 1.36971 1.48622 1.21432 0.96141 0.92190 0.90880 1.22160 0.97224 0.98950 0.98204 1.20518 0.91555 0.92097 0.88373 1.45259 1.14749 1.61302 1.17039 1.15915 0.81067 0.78204 0.83838 1.90897 1.73093 1.64729 1.22173 1.47231 1.13591 1.64741 1.11096 1.21566 0.80484 0.93782 1.03626 1.20861 1.01913 0.96101 0.94294 1.19457 0.95972 0.93026 0.96277 1.21295 1.02824 0.97280 0.96652 1.17904 0.98808 0.81506 0.95826 1.91477 1.92036 1.41674 1.87766 1.21342 0.98540 0.95545 1.02288 1.21202 0.98957 0.94832 0.94662 1.19997 0.97580 0.96908 0.96826 1.20615 0.99864 0.93404 0.83143 1.22205 0.98468 0.98108 0.98007 1.21001 0.91945 0.91102 0.93723 0.92894 0.94892 0.92234 0.88937 0.90809 0.91425 0.75453 0.89731 0.88663 0.91019 0.87069 0.83887 0.83009 0.81834 0.87411 0.88021 0.92134 0.92084 0.95338 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.10 13.97 21.65 0.30 -59.79 16 2 C -0.03 -1.99 5.32 84.86 0.45 -1.54 16 3 Si 0.95 45.96 24.29 68.60 1.67 47.63 16 4 H -0.27 -11.71 6.62 99.48 0.66 -11.05 16 5 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 6 H -0.26 -12.22 6.41 99.48 0.64 -11.58 16 7 C -0.25 -14.06 10.04 84.04 0.84 -13.22 16 8 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 9 N -0.62 -28.88 2.73 -699.09 -1.91 -30.79 16 10 C 0.12 4.76 4.16 86.36 0.36 5.12 16 11 C -0.13 -3.72 5.55 30.67 0.17 -3.55 16 12 C 0.18 5.31 2.38 45.02 0.11 5.42 16 13 N -0.73 -16.67 4.98 -457.67 -2.28 -18.95 16 14 C 0.71 18.11 8.28 179.06 1.48 19.59 16 15 O -0.63 -21.69 15.51 -3.99 -0.06 -21.75 16 16 N -0.63 -11.12 2.93 -842.05 -2.47 -13.59 16 17 C 0.13 1.91 6.43 86.17 0.55 2.46 16 18 C -0.09 -1.21 5.86 29.75 0.17 -1.03 16 19 C -0.05 -0.65 5.76 -19.86 -0.11 -0.77 16 20 C -0.16 -2.34 9.57 22.41 0.21 -2.12 16 21 C 0.08 1.24 7.30 22.30 0.16 1.40 16 22 F -0.15 -2.75 17.27 44.97 0.78 -1.98 16 23 C -0.16 -1.94 10.04 22.25 0.22 -1.72 16 24 C -0.08 -0.78 9.62 22.34 0.21 -0.56 16 25 C -0.11 -1.37 5.82 -19.81 -0.12 -1.49 16 26 C 0.15 1.65 6.07 85.64 0.52 2.17 16 27 C -0.13 -4.25 5.65 30.67 0.17 -4.08 16 28 C 0.15 5.94 6.52 86.36 0.56 6.50 16 29 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.03 1.31 6.84 -2.39 -0.02 1.29 16 31 H 0.06 2.59 4.63 -2.39 -0.01 2.58 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.26 7.65 -2.39 -0.02 2.24 16 35 H 0.41 6.70 6.26 -92.71 -0.58 6.12 16 36 H 0.08 1.60 7.09 -2.38 -0.02 1.58 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.11 0.91 8.11 -2.39 -0.02 0.89 16 40 H 0.14 1.69 8.05 -2.91 -0.02 1.66 16 41 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.16 0.67 8.05 -2.91 -0.02 0.64 16 43 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 0.88 5.97 -2.38 -0.01 0.87 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.06 2.05 8.09 -2.39 -0.02 2.03 16 47 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -74.89 376.28 2.30 -72.59 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.29 Total: 14.04 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.98 Total: 12.59 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -6.36 Total: -123.12 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.06 Total: -21.75 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -74.89 2.30 -72.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611258150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.632 kcal (2) G-P(sol) polarization free energy of solvation -74.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds