Wall clock time and date at job start Wed Apr 1 2020 04:44:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86801 * 120.00307 * 2 1
4 4 H 1.48498 * 109.46974 * 239.99633 * 3 2 1
5 5 H 1.48501 * 109.46896 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47233 * 119.99523 * 3 2 1
7 7 C 1.37886 * 119.99922 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99673 * 180.02562 * 7 2 1
9 9 C 1.50694 * 119.99998 * 0.02562 * 7 2 1
10 10 N 1.46499 * 109.47230 * 179.97438 * 9 7 2
11 11 C 1.34775 * 120.00001 * 179.97438 * 10 9 7
12 12 O 1.21273 * 120.00163 * 359.97438 * 11 10 9
13 13 C 1.50705 * 120.00020 * 179.97438 * 11 10 9
14 14 N 1.46899 * 109.47319 * 186.17594 * 13 11 10
15 15 C 1.46955 * 110.99733 * 66.15453 * 14 13 11
16 16 C 1.53053 * 109.36102 * 183.18880 * 15 14 13
17 17 N 1.46953 * 109.36415 * 301.59647 * 16 15 14
18 18 C 1.38264 * 111.00107 * 183.18860 * 17 16 15
19 19 N 1.32438 * 119.82720 * 303.65828 * 18 17 16
20 20 C 1.31844 * 121.77387 * 180.30838 * 19 18 17
21 21 C 1.38380 * 121.21846 * 359.70378 * 20 19 18
22 22 C 1.38325 * 119.50868 * 359.97438 * 21 20 19
23 23 C 1.39976 * 118.36858 * 0.02562 * 22 21 20
24 24 C 1.47426 * 120.61020 * 180.02562 * 23 22 21
25 25 N 1.34780 * 120.00297 * 353.24803 * 24 23 22
26 26 O 1.21604 * 120.00581 * 173.24892 * 24 23 22
27 27 C 1.46955 * 110.88046 * 59.32505 * 17 16 15
28 28 C 1.46953 * 110.99974 * 189.95203 * 14 13 11
29 29 H 0.97002 * 119.99949 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.47186 * 59.99269 * 9 7 2
31 31 H 1.09003 * 109.47055 * 299.99287 * 9 7 2
32 32 H 0.97000 * 119.99798 * 359.97438 * 10 9 7
33 33 H 1.09000 * 109.46812 * 66.17599 * 13 11 10
34 34 H 1.08999 * 109.47346 * 306.18177 * 13 11 10
35 35 H 1.09000 * 109.49042 * 63.22073 * 15 14 13
36 36 H 1.09002 * 109.49015 * 303.15101 * 15 14 13
37 37 H 1.09004 * 109.48817 * 181.62931 * 16 15 14
38 38 H 1.09007 * 109.50749 * 61.57813 * 16 15 14
39 39 H 1.07999 * 119.39052 * 179.67264 * 20 19 18
40 40 H 1.07998 * 120.24378 * 179.97438 * 21 20 19
41 41 H 1.07999 * 120.81974 * 180.02562 * 22 21 20
42 42 H 0.96996 * 120.00517 * 180.02562 * 25 24 23
43 43 H 0.96998 * 119.99702 * 359.72381 * 25 24 23
44 44 H 1.08994 * 109.49464 * 60.64463 * 27 17 16
45 45 H 1.09002 * 109.49015 * 180.71459 * 27 17 16
46 46 H 1.09003 * 109.48927 * 296.78149 * 28 14 13
47 47 H 1.09004 * 109.48944 * 56.84434 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2511 -2.4992 0.0005
10 7 2.2030 -3.6127 0.0005
11 6 1.7537 -4.8834 0.0011
12 8 0.5614 -5.1050 0.0020
13 6 2.7330 -6.0289 0.0005
14 7 2.0045 -7.2959 -0.1478
15 6 1.3655 -7.3845 -1.4682
16 6 0.5535 -8.6791 -1.5530
17 7 1.4414 -9.8271 -1.3228
18 6 0.7558 -11.0197 -1.4623
19 7 -0.3235 -11.2486 -0.7296
20 6 -1.0028 -12.3744 -0.8271
21 6 -0.6192 -13.3695 -1.7089
22 6 0.4969 -13.1820 -2.5042
23 6 1.2040 -11.9798 -2.3852
24 6 2.4003 -11.7278 -3.2091
25 7 2.9022 -12.7081 -3.9861
26 8 2.9344 -10.6356 -3.1877
27 6 2.0804 -9.7385 -0.0024
28 6 2.8924 -8.4440 0.0825
29 1 -0.4850 0.8401 -0.0004
30 1 0.6246 -2.5571 -0.8896
31 1 0.6242 -2.5568 0.8904
32 1 3.1567 -3.4355 0.0002
33 1 3.2853 -6.0351 0.9402
34 1 3.4296 -5.9110 -0.8295
35 1 2.1315 -7.3841 -2.2437
36 1 0.7036 -6.5301 -1.6099
37 1 0.1021 -8.7610 -2.5418
38 1 -0.2301 -8.6676 -0.7954
39 1 -1.8745 -12.5228 -0.2071
40 1 -1.1870 -14.2857 -1.7756
41 1 0.8151 -13.9443 -3.1999
42 1 3.6895 -12.5424 -4.5279
43 1 2.4786 -13.5806 -4.0002
44 1 1.3146 -9.7389 0.7731
45 1 2.7424 -10.5929 0.1393
46 1 3.6758 -8.4556 -0.6754
47 1 3.3439 -8.3620 1.0713
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000747328881.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:20
Heat of formation + Delta-G solvation = 0.240750 kcal
Electronic energy + Delta-G solvation = -30221.692396 eV
Core-core repulsion = 26019.315713 eV
Total energy + Delta-G solvation = -4202.376684 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.26126 -39.42627 -38.90790 -38.08020 -35.41117 -34.13383 -33.99420 -32.53029
-32.26433 -31.08758 -30.86535 -28.65927 -26.91357 -25.01491 -24.71405 -23.58772
-22.78890 -22.08241 -21.22924 -19.77281 -19.52919 -18.50847 -17.56457 -17.31822
-17.02501 -16.32273 -15.81332 -15.51683 -15.46044 -15.21900 -15.10350 -14.85071
-14.61247 -14.59071 -14.20684 -13.96097 -13.81809 -13.61020 -13.51935 -13.06289
-12.89453 -12.54692 -12.20894 -11.96505 -11.81646 -11.44238 -11.15320 -11.00126
-10.95436 -10.90026 -10.73363 -10.36088 -10.31156 -10.26408 -10.02651 -9.93753
-9.35640 -9.34156 -8.91341 -8.67232 -8.54928 -8.07120 -7.76839 -6.11628
-4.18297 0.26649 0.70531 2.64928 3.13026 3.28723 3.33204 3.34832
3.39261 3.43900 3.50071 3.77701 4.11437 4.25133 4.32259 4.37498
4.51595 4.63965 4.68159 4.93949 5.04880 5.15420 5.24107 5.25918
5.36964 5.40409 5.49214 5.53080 5.56196 5.63000 5.69531 5.72737
5.79866 5.92296 5.96571 6.22662 6.23844 6.48067 6.77159 6.95623
7.03608 7.19703 7.24103 7.40124 7.51028 7.53824 7.59237 7.74320
8.03167 8.04978 8.72135 8.85750 9.22283 9.48465 10.98517
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.023332 B = 0.001945 C = 0.001884
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1199.797921 B =14390.824352 C =14861.788998
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.063 3.937
3 Si 0.904 3.096
4 H -0.276 1.276
5 H -0.286 1.286
6 H -0.275 1.275
7 C -0.543 4.543
8 H 0.062 0.938
9 C 0.252 3.748
10 N -0.716 5.716
11 C 0.498 3.502
12 O -0.538 6.538
13 C 0.037 3.963
14 N -0.519 5.519
15 C 0.059 3.941
16 C 0.072 3.928
17 N -0.473 5.473
18 C 0.357 3.643
19 N -0.510 5.510
20 C 0.139 3.861
21 C -0.188 4.188
22 C -0.043 4.043
23 C -0.168 4.168
24 C 0.561 3.439
25 N -0.860 5.860
26 O -0.489 6.489
27 C 0.071 3.929
28 C 0.060 3.940
29 H 0.266 0.734
30 H 0.025 0.975
31 H 0.026 0.974
32 H 0.389 0.611
33 H 0.099 0.901
34 H 0.058 0.942
35 H 0.040 0.960
36 H 0.100 0.900
37 H 0.073 0.927
38 H 0.062 0.938
39 H 0.161 0.839
40 H 0.142 0.858
41 H 0.139 0.861
42 H 0.404 0.596
43 H 0.395 0.605
44 H 0.057 0.943
45 H 0.073 0.927
46 H 0.046 0.954
47 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.604 -33.124 -5.676 33.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.141 4.141
3 Si 0.731 3.269
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.581 4.581
8 H 0.080 0.920
9 C 0.131 3.869
10 N -0.366 5.366
11 C 0.282 3.718
12 O -0.415 6.415
13 C -0.095 4.095
14 N -0.244 5.244
15 C -0.069 4.069
16 C -0.055 4.055
17 N -0.196 5.196
18 C 0.128 3.872
19 N -0.222 5.222
20 C -0.021 4.021
21 C -0.208 4.208
22 C -0.069 4.069
23 C -0.176 4.176
24 C 0.344 3.656
25 N -0.426 5.426
26 O -0.362 6.362
27 C -0.055 4.055
28 C -0.068 4.068
29 H 0.076 0.924
30 H 0.043 0.957
31 H 0.044 0.956
32 H 0.221 0.779
33 H 0.117 0.883
34 H 0.076 0.924
35 H 0.058 0.942
36 H 0.118 0.882
37 H 0.091 0.909
38 H 0.080 0.920
39 H 0.178 0.822
40 H 0.160 0.840
41 H 0.157 0.843
42 H 0.236 0.764
43 H 0.223 0.777
44 H 0.075 0.925
45 H 0.091 0.909
46 H 0.064 0.936
47 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 3.515 -31.641 -4.936 32.216
hybrid contribution 1.218 -0.158 -0.870 1.505
sum 4.733 -31.799 -5.806 32.669
Atomic orbital electron populations
1.69970 1.06088 1.27338 1.48910 1.24960 0.94918 0.99424 0.94780
0.86475 0.79402 0.82361 0.78658 1.20102 1.21109 1.20085 1.21207
0.93222 0.90531 1.53156 0.91982 1.19057 0.88283 0.81897 0.97635
1.46456 1.11020 1.06127 1.72976 1.20309 0.89599 0.84033 0.77825
1.90639 1.16625 1.84581 1.49689 1.21994 0.95251 0.89490 1.02726
1.61795 1.31058 1.00464 1.31071 1.22257 0.98281 0.97779 0.88616
1.22119 0.94074 0.87877 1.01390 1.60216 1.29615 0.99108 1.30689
1.19963 0.87744 0.90865 0.88634 1.68058 1.07587 1.22482 1.24061
1.22893 0.97096 0.87736 0.94368 1.22080 0.98536 1.01597 0.98629
1.21720 0.93567 0.95101 0.96561 1.20704 0.99454 0.96053 1.01347
1.17811 0.83615 0.84507 0.79621 1.43801 1.34567 1.15334 1.48916
1.90938 1.59127 1.22713 1.63379 1.22100 0.97772 0.97670 0.87983
1.22132 0.94113 0.89307 1.01254 0.92439 0.95675 0.95594 0.77870
0.88298 0.92444 0.94171 0.88154 0.90865 0.91991 0.82223 0.84032
0.84312 0.76441 0.77656 0.92500 0.90906 0.93570 0.90060
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16
2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16
3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16
4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
7 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16
8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16
9 C 0.25 6.85 5.43 -5.20 -0.03 6.82 16
10 N -0.72 -15.56 5.55 -61.47 -0.34 -15.90 16
11 C 0.50 10.35 7.39 -10.98 -0.08 10.27 16
12 O -0.54 -13.34 14.66 5.56 0.08 -13.26 16
13 C 0.04 0.57 5.45 -4.97 -0.03 0.55 16
14 N -0.52 -8.27 4.41 -235.90 -1.04 -9.31 16
15 C 0.06 0.96 5.26 -3.77 -0.02 0.94 16
16 C 0.07 1.09 5.38 -3.77 -0.02 1.07 16
17 N -0.47 -6.50 2.66 -172.81 -0.46 -6.96 16
18 C 0.36 4.34 5.34 -155.18 -0.83 3.51 16
19 N -0.51 -5.91 9.60 -12.20 -0.12 -6.03 16
20 C 0.14 1.08 11.16 -17.49 -0.20 0.88 16
21 C -0.19 -1.01 10.09 -39.50 -0.40 -1.41 16
22 C -0.04 -0.25 9.62 -38.90 -0.37 -0.62 16
23 C -0.17 -1.61 5.91 -104.65 -0.62 -2.23 16
24 C 0.56 5.67 8.02 -12.52 -0.10 5.57 16
25 N -0.86 -4.52 8.83 30.43 0.27 -4.25 16
26 O -0.49 -7.08 15.94 5.27 0.08 -6.99 16
27 C 0.07 0.92 5.48 -3.77 -0.02 0.90 16
28 C 0.06 0.78 5.61 -3.77 -0.02 0.76 16
29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.39 7.23 8.32 -40.82 -0.34 6.89 16
33 H 0.10 1.32 8.03 -51.93 -0.42 0.91 16
34 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16
35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.10 1.91 6.07 -51.93 -0.32 1.60 16
37 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16
38 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16
39 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16
40 H 0.14 0.31 8.06 -52.49 -0.42 -0.12 16
41 H 0.14 0.26 6.57 -52.49 -0.34 -0.08 16
42 H 0.40 1.77 8.93 -40.82 -0.36 1.41 16
43 H 0.39 0.78 6.98 -40.82 -0.28 0.49 16
44 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16
45 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16
46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16
47 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16
LS Contribution 388.51 15.07 5.85 5.85
Total: -1.00 -37.58 388.51 -9.75 -47.33
By element:
Atomic # 1 Polarization: 12.45 SS G_CDS: -6.65 Total: 5.80 kcal
Atomic # 6 Polarization: 16.49 SS G_CDS: -3.15 Total: 13.34 kcal
Atomic # 7 Polarization: -67.33 SS G_CDS: -0.95 Total: -68.28 kcal
Atomic # 8 Polarization: -20.42 SS G_CDS: 0.17 Total: -20.25 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -37.58 -9.75 -47.33 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000747328881.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.567 kcal
(2) G-P(sol) polarization free energy of solvation -37.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.326 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.241 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds