Wall clock time and date at job start Wed Apr 1 2020 04:44:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86801 * 120.00307 * 2 1
4 4 H 1.48498 * 109.46974 * 239.99633 * 3 2 1
5 5 H 1.48501 * 109.46896 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47233 * 119.99523 * 3 2 1
7 7 C 1.37886 * 119.99922 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99673 * 180.02562 * 7 2 1
9 9 C 1.50694 * 119.99998 * 0.02562 * 7 2 1
10 10 N 1.46499 * 109.47230 * 179.97438 * 9 7 2
11 11 C 1.34775 * 120.00001 * 179.97438 * 10 9 7
12 12 O 1.21273 * 120.00163 * 359.97438 * 11 10 9
13 13 C 1.50705 * 120.00020 * 179.97438 * 11 10 9
14 14 N 1.46899 * 109.47319 * 186.17594 * 13 11 10
15 15 C 1.46955 * 110.99733 * 66.15453 * 14 13 11
16 16 C 1.53053 * 109.36102 * 183.18880 * 15 14 13
17 17 N 1.46953 * 109.36415 * 301.59647 * 16 15 14
18 18 C 1.38264 * 111.00107 * 183.18860 * 17 16 15
19 19 N 1.32438 * 119.82720 * 303.65828 * 18 17 16
20 20 C 1.31844 * 121.77387 * 180.30838 * 19 18 17
21 21 C 1.38380 * 121.21846 * 359.70378 * 20 19 18
22 22 C 1.38325 * 119.50868 * 359.97438 * 21 20 19
23 23 C 1.39976 * 118.36858 * 0.02562 * 22 21 20
24 24 C 1.47426 * 120.61020 * 180.02562 * 23 22 21
25 25 N 1.34780 * 120.00297 * 353.24803 * 24 23 22
26 26 O 1.21604 * 120.00581 * 173.24892 * 24 23 22
27 27 C 1.46955 * 110.88046 * 59.32505 * 17 16 15
28 28 C 1.46953 * 110.99974 * 189.95203 * 14 13 11
29 29 H 0.97002 * 119.99949 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.47186 * 59.99269 * 9 7 2
31 31 H 1.09003 * 109.47055 * 299.99287 * 9 7 2
32 32 H 0.97000 * 119.99798 * 359.97438 * 10 9 7
33 33 H 1.09000 * 109.46812 * 66.17599 * 13 11 10
34 34 H 1.08999 * 109.47346 * 306.18177 * 13 11 10
35 35 H 1.09000 * 109.49042 * 63.22073 * 15 14 13
36 36 H 1.09002 * 109.49015 * 303.15101 * 15 14 13
37 37 H 1.09004 * 109.48817 * 181.62931 * 16 15 14
38 38 H 1.09007 * 109.50749 * 61.57813 * 16 15 14
39 39 H 1.07999 * 119.39052 * 179.67264 * 20 19 18
40 40 H 1.07998 * 120.24378 * 179.97438 * 21 20 19
41 41 H 1.07999 * 120.81974 * 180.02562 * 22 21 20
42 42 H 0.96996 * 120.00517 * 180.02562 * 25 24 23
43 43 H 0.96998 * 119.99702 * 359.72381 * 25 24 23
44 44 H 1.08994 * 109.49464 * 60.64463 * 27 17 16
45 45 H 1.09002 * 109.49015 * 180.71459 * 27 17 16
46 46 H 1.09003 * 109.48927 * 296.78149 * 28 14 13
47 47 H 1.09004 * 109.48944 * 56.84434 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2511 -2.4992 0.0005
10 7 2.2030 -3.6127 0.0005
11 6 1.7537 -4.8834 0.0011
12 8 0.5614 -5.1050 0.0020
13 6 2.7330 -6.0289 0.0005
14 7 2.0045 -7.2959 -0.1478
15 6 1.3655 -7.3845 -1.4682
16 6 0.5535 -8.6791 -1.5530
17 7 1.4414 -9.8271 -1.3228
18 6 0.7558 -11.0197 -1.4623
19 7 -0.3235 -11.2486 -0.7296
20 6 -1.0028 -12.3744 -0.8271
21 6 -0.6192 -13.3695 -1.7089
22 6 0.4969 -13.1820 -2.5042
23 6 1.2040 -11.9798 -2.3852
24 6 2.4003 -11.7278 -3.2091
25 7 2.9022 -12.7081 -3.9861
26 8 2.9344 -10.6356 -3.1877
27 6 2.0804 -9.7385 -0.0024
28 6 2.8924 -8.4440 0.0825
29 1 -0.4850 0.8401 -0.0004
30 1 0.6246 -2.5571 -0.8896
31 1 0.6242 -2.5568 0.8904
32 1 3.1567 -3.4355 0.0002
33 1 3.2853 -6.0351 0.9402
34 1 3.4296 -5.9110 -0.8295
35 1 2.1315 -7.3841 -2.2437
36 1 0.7036 -6.5301 -1.6099
37 1 0.1021 -8.7610 -2.5418
38 1 -0.2301 -8.6676 -0.7954
39 1 -1.8745 -12.5228 -0.2071
40 1 -1.1870 -14.2857 -1.7756
41 1 0.8151 -13.9443 -3.1999
42 1 3.6895 -12.5424 -4.5279
43 1 2.4786 -13.5806 -4.0002
44 1 1.3146 -9.7389 0.7731
45 1 2.7424 -10.5929 0.1393
46 1 3.6758 -8.4556 -0.6754
47 1 3.3439 -8.3620 1.0713
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000747328881.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:19
Heat of formation + Delta-G solvation = -32.225915 kcal
Electronic energy + Delta-G solvation = -30223.100257 eV
Core-core repulsion = 26019.315713 eV
Total energy + Delta-G solvation = -4203.784544 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.00930 -40.81691 -39.79042 -39.30103 -36.56674 -35.97365 -34.81213 -34.33614
-33.11576 -32.02638 -31.95313 -30.14072 -28.59245 -26.08957 -25.59721 -24.74220
-24.30991 -23.36647 -21.86691 -21.36287 -20.85365 -19.12828 -18.93083 -18.37144
-17.98642 -17.51852 -17.20848 -16.90106 -16.69236 -16.37103 -16.32730 -15.91732
-15.71338 -15.59270 -15.48999 -15.32227 -15.14127 -14.59358 -14.39190 -14.20074
-14.08346 -13.94310 -13.77563 -13.46027 -13.18677 -12.92872 -12.83832 -12.65906
-12.33172 -12.24036 -12.15708 -12.04576 -11.50731 -11.09223 -10.96305 -10.78675
-10.77902 -10.63469 -10.54429 -9.99369 -9.80029 -9.54362 -9.29814 -8.28637
-6.45522 -0.37085 0.14975 1.42514 1.47222 1.55274 1.80781 1.97359
2.25893 2.44387 2.52331 2.58792 2.78532 3.00285 3.05699 3.47690
3.78617 3.84026 3.86744 3.91721 4.03685 4.10095 4.16710 4.23524
4.26883 4.33947 4.40471 4.47238 4.50261 4.55980 4.70756 4.82864
4.83884 4.94228 5.00978 5.07664 5.11794 5.24964 5.45107 5.49576
5.69553 5.70110 5.84665 5.88273 5.98669 6.05064 6.24229 6.53961
6.65478 6.87431 6.96390 7.23868 7.45765 7.54512 8.83399
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.023332 B = 0.001945 C = 0.001884
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1199.797921 B =14390.824352 C =14861.788998
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.001 3.999
3 Si 0.987 3.013
4 H -0.262 1.262
5 H -0.285 1.285
6 H -0.261 1.261
7 C -0.557 4.557
8 H 0.084 0.916
9 C 0.270 3.730
10 N -0.710 5.710
11 C 0.495 3.505
12 O -0.584 6.584
13 C 0.050 3.950
14 N -0.537 5.537
15 C 0.068 3.932
16 C 0.085 3.915
17 N -0.473 5.473
18 C 0.319 3.681
19 N -0.547 5.547
20 C 0.123 3.877
21 C -0.168 4.168
22 C -0.031 4.031
23 C -0.180 4.180
24 C 0.558 3.442
25 N -0.835 5.835
26 O -0.544 6.544
27 C 0.075 3.925
28 C 0.066 3.934
29 H 0.269 0.731
30 H -0.016 1.016
31 H -0.015 1.015
32 H 0.408 0.592
33 H 0.133 0.867
34 H 0.083 0.917
35 H 0.039 0.961
36 H 0.065 0.935
37 H 0.067 0.933
38 H 0.037 0.963
39 H 0.181 0.819
40 H 0.185 0.815
41 H 0.185 0.815
42 H 0.411 0.589
43 H 0.414 0.586
44 H 0.039 0.961
45 H 0.087 0.913
46 H 0.048 0.952
47 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.875 -35.837 -6.152 37.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.198 4.198
3 Si 0.810 3.190
4 H -0.187 1.187
5 H -0.211 1.211
6 H -0.186 1.186
7 C -0.594 4.594
8 H 0.102 0.898
9 C 0.147 3.853
10 N -0.361 5.361
11 C 0.282 3.718
12 O -0.464 6.464
13 C -0.080 4.080
14 N -0.262 5.262
15 C -0.060 4.060
16 C -0.042 4.042
17 N -0.197 5.197
18 C 0.091 3.909
19 N -0.260 5.260
20 C -0.036 4.036
21 C -0.187 4.187
22 C -0.057 4.057
23 C -0.188 4.188
24 C 0.342 3.658
25 N -0.401 5.401
26 O -0.421 6.421
27 C -0.052 4.052
28 C -0.062 4.062
29 H 0.077 0.923
30 H 0.002 0.998
31 H 0.003 0.997
32 H 0.244 0.756
33 H 0.151 0.849
34 H 0.100 0.900
35 H 0.057 0.943
36 H 0.083 0.917
37 H 0.086 0.914
38 H 0.055 0.945
39 H 0.198 0.802
40 H 0.203 0.797
41 H 0.202 0.798
42 H 0.243 0.757
43 H 0.246 0.754
44 H 0.057 0.943
45 H 0.106 0.894
46 H 0.066 0.934
47 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 5.837 -34.456 -5.431 35.366
hybrid contribution 0.383 0.450 -0.744 0.950
sum 6.219 -34.006 -6.175 35.117
Atomic orbital electron populations
1.70144 1.08311 1.28605 1.49938 1.26113 0.95814 1.04021 0.93870
0.85180 0.77875 0.76464 0.79520 1.18668 1.21088 1.18552 1.21604
0.94329 0.90576 1.52930 0.89753 1.18485 0.88659 0.84341 0.93847
1.46186 1.11162 1.05457 1.73289 1.21304 0.89957 0.84719 0.75853
1.90624 1.19218 1.85244 1.51346 1.21943 0.93673 0.86958 1.05439
1.61749 1.32397 1.01551 1.30550 1.22025 0.97714 0.97090 0.89209
1.21828 0.93586 0.88625 1.00184 1.60187 1.29428 0.99270 1.30770
1.20048 0.88991 0.91095 0.90798 1.67941 1.08199 1.24695 1.25136
1.23423 0.97441 0.87371 0.95394 1.22539 0.97865 1.01977 0.96308
1.22226 0.92651 0.94251 0.96601 1.20790 0.99944 0.97100 1.00924
1.18014 0.83577 0.84456 0.79788 1.43563 1.34185 1.15205 1.47171
1.90908 1.60785 1.24999 1.65428 1.22073 0.97435 0.98153 0.87527
1.22201 0.93477 0.87958 1.02546 0.92271 0.99780 0.99659 0.75640
0.84881 0.89963 0.94295 0.91688 0.91420 0.94478 0.80233 0.79737
0.79796 0.75659 0.75408 0.94255 0.89440 0.93408 0.87606
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16
2 C 0.00 0.07 5.46 84.66 0.46 0.53 16
3 Si 0.99 43.41 29.54 68.60 2.03 45.43 16
4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16
5 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16
6 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16
7 C -0.56 -31.23 9.28 25.60 0.24 -30.99 16
8 H 0.08 4.25 7.60 -2.91 -0.02 4.23 16
9 C 0.27 15.44 5.43 85.63 0.46 15.90 16
10 N -0.71 -31.58 5.55 -466.80 -2.59 -34.17 16
11 C 0.49 21.25 7.39 87.66 0.65 21.90 16
12 O -0.58 -30.94 14.66 -3.01 -0.04 -30.98 16
13 C 0.05 1.54 5.45 85.56 0.47 2.01 16
14 N -0.54 -17.44 4.41 -900.27 -3.97 -21.41 16
15 C 0.07 2.39 5.26 86.31 0.45 2.85 16
16 C 0.09 2.82 5.38 86.31 0.46 3.28 16
17 N -0.47 -13.61 2.66 -700.66 -1.87 -15.47 16
18 C 0.32 7.90 5.34 133.64 0.71 8.62 16
19 N -0.55 -12.95 9.60 -192.51 -1.85 -14.80 16
20 C 0.12 1.72 11.16 84.72 0.95 2.67 16
21 C -0.17 -1.16 10.09 22.32 0.23 -0.94 16
22 C -0.03 -0.24 9.62 22.71 0.22 -0.02 16
23 C -0.18 -3.23 5.91 -19.88 -0.12 -3.35 16
24 C 0.56 10.68 8.02 86.66 0.69 11.38 16
25 N -0.83 -6.66 8.83 -175.88 -1.55 -8.22 16
26 O -0.54 -15.94 15.94 -4.04 -0.06 -16.01 16
27 C 0.07 1.97 5.48 86.31 0.47 2.44 16
28 C 0.07 1.67 5.61 86.31 0.48 2.15 16
29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16
30 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16
31 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16
32 H 0.41 14.90 8.32 -92.71 -0.77 14.13 16
33 H 0.13 3.21 8.03 -2.39 -0.02 3.19 16
34 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16
35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
36 H 0.06 2.72 6.07 -2.39 -0.01 2.71 16
37 H 0.07 2.22 8.13 -2.38 -0.02 2.20 16
38 H 0.04 1.37 7.86 -2.38 -0.02 1.35 16
39 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16
40 H 0.19 -0.28 8.06 -2.91 -0.02 -0.30 16
41 H 0.18 -0.35 6.57 -2.91 -0.02 -0.37 16
42 H 0.41 2.70 8.93 -92.71 -0.83 1.87 16
43 H 0.41 0.00 6.98 -92.71 -0.65 -0.65 16
44 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16
45 H 0.09 2.00 8.13 -2.39 -0.02 1.98 16
46 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
47 H 0.11 2.15 8.07 -2.38 -0.02 2.13 16
Total: -1.00 -90.14 388.51 -4.00 -94.14
By element:
Atomic # 1 Polarization: 21.78 SS G_CDS: -1.21 Total: 20.57 kcal
Atomic # 6 Polarization: 31.59 SS G_CDS: 6.83 Total: 38.43 kcal
Atomic # 7 Polarization: -140.03 SS G_CDS: -11.54 Total: -151.57 kcal
Atomic # 8 Polarization: -46.88 SS G_CDS: -0.11 Total: -46.99 kcal
Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal
Total: -90.14 -4.00 -94.14 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000747328881.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.911 kcal
(2) G-P(sol) polarization free energy of solvation -90.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.000 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.226 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds