Wall clock time and date at job start Wed Apr 1 2020 04:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47166 * 141.73373 * 3 2 1 5 5 N 1.46900 * 109.47370 * 181.16293 * 4 3 2 6 6 C 1.46898 * 111.00134 * 299.45550 * 5 4 3 7 7 C 1.50703 * 109.46956 * 294.06267 * 6 5 4 8 8 H 1.08000 * 120.00175 * 355.11202 * 7 6 5 9 9 C 1.37875 * 119.99920 * 175.11140 * 7 6 5 10 10 N 1.31509 * 120.00190 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99805 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47076 * 90.00417 * 11 9 7 13 13 H 1.48509 * 109.47435 * 210.00051 * 11 9 7 14 14 H 1.48498 * 109.47480 * 330.00419 * 11 9 7 15 15 C 1.46901 * 110.99544 * 63.40591 * 5 4 3 16 16 C 1.50702 * 109.47128 * 66.04718 * 15 5 4 17 17 C 1.38273 * 119.91881 * 270.29443 * 16 15 5 18 18 C 1.38152 * 120.10812 * 180.30225 * 17 16 15 19 19 C 1.38825 * 119.95025 * 359.42118 * 18 17 16 20 20 N 1.39849 * 120.08091 * 180.30111 * 19 18 17 21 21 C 1.47006 * 110.99794 * 63.63497 * 20 19 18 22 22 C 1.53097 * 109.25788 * 177.60893 * 21 20 19 23 23 O 1.43021 * 109.25761 * 56.84955 * 22 21 20 24 24 C 1.43018 * 113.73632 * 301.33112 * 23 22 21 25 25 C 1.47011 * 110.99532 * 300.00288 * 20 19 18 26 26 C 1.39082 * 119.84162 * 0.27992 * 19 18 17 27 27 F 1.35097 * 120.05702 * 180.02562 * 26 19 18 28 28 C 1.38279 * 119.88645 * 0.02562 * 26 19 18 29 29 H 1.08998 * 109.47155 * 21.73424 * 3 2 1 30 30 H 1.09003 * 109.46967 * 261.73949 * 3 2 1 31 31 H 1.09004 * 109.46620 * 61.16452 * 4 3 2 32 32 H 1.09001 * 109.47147 * 301.16798 * 4 3 2 33 33 H 1.09008 * 109.47277 * 54.05933 * 6 5 4 34 34 H 1.08997 * 109.47502 * 174.06401 * 6 5 4 35 35 H 0.97008 * 120.00126 * 179.97438 * 10 9 7 36 36 H 1.09004 * 109.47314 * 306.04405 * 15 5 4 37 37 H 1.09005 * 109.47106 * 186.04535 * 15 5 4 38 38 H 1.08000 * 119.94213 * 0.02585 * 17 16 15 39 39 H 1.07996 * 120.02042 * 179.70056 * 18 17 16 40 40 H 1.09003 * 109.50832 * 297.54313 * 21 20 19 41 41 H 1.08997 * 109.51141 * 57.67558 * 21 20 19 42 42 H 1.09002 * 109.50823 * 296.91595 * 22 21 20 43 43 H 1.09000 * 109.51366 * 176.78035 * 22 21 20 44 44 H 1.08997 * 109.50583 * 298.72967 * 24 23 22 45 45 H 1.09003 * 109.53850 * 178.62364 * 24 23 22 46 46 H 1.08998 * 109.51284 * 302.32162 * 25 20 19 47 47 H 1.08998 * 109.51244 * 62.45701 * 25 20 19 48 48 H 1.07994 * 119.97540 * 180.02562 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1334 -0.8934 5 7 4.5863 1.1168 -0.9155 6 6 5.1354 1.3116 0.4330 7 6 4.7975 2.6981 0.9175 8 1 4.3009 3.3944 0.2581 9 6 5.1224 3.0775 2.2025 10 7 5.7275 2.2297 3.0054 11 14 4.7042 4.7963 2.8028 12 1 3.3499 4.7920 3.4121 13 1 5.7017 5.2229 3.8169 14 1 4.7284 5.7404 1.6569 15 6 5.0896 -0.1266 -1.5143 16 6 4.7084 -0.1726 -2.9716 17 6 3.5066 -0.7403 -3.3526 18 6 3.1561 -0.7902 -4.6880 19 6 4.0064 -0.2586 -5.6480 20 7 3.6515 -0.3019 -7.0000 21 6 2.4403 0.4920 -7.2523 22 6 2.1224 0.4661 -8.7497 23 8 1.9793 -0.8909 -9.1781 24 6 3.1409 -1.6928 -8.9479 25 6 3.4690 -1.6887 -7.4525 26 6 5.2120 0.3176 -5.2620 27 9 6.0425 0.8366 -6.1925 28 6 5.5591 0.3582 -3.9240 29 1 2.9718 -0.9538 -0.3805 30 1 2.9713 0.1485 1.0170 31 1 2.7709 2.0895 -0.5009 32 1 2.7373 0.9968 -1.9057 33 1 4.7043 0.5748 1.1108 34 1 6.2182 1.1902 0.4054 35 1 5.9565 2.4968 3.9094 36 1 4.6533 -0.9814 -0.9975 37 1 6.1751 -0.1612 -1.4214 38 1 2.8428 -1.1495 -2.6053 39 1 2.2193 -1.2383 -4.9844 40 1 1.6046 0.0681 -6.6955 41 1 2.6064 1.5210 -6.9334 42 1 2.9344 0.9386 -9.3025 43 1 1.1935 1.0058 -8.9341 44 1 3.9825 -1.2832 -9.5064 45 1 2.9493 -2.7146 -9.2757 46 1 4.3862 -2.2517 -7.2797 47 1 2.6498 -2.1475 -6.8989 48 1 6.4946 0.8056 -3.6227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779432650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:19 Heat of formation + Delta-G solvation = -17.656753 kcal Electronic energy + Delta-G solvation = -30478.678724 eV Core-core repulsion = 26255.605985 eV Total energy + Delta-G solvation = -4223.072739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.71568 -40.51901 -39.16877 -37.67240 -36.19492 -35.52820 -32.77502 -31.54509 -31.40762 -30.58528 -30.10403 -27.95468 -26.38736 -24.93312 -24.34744 -23.63571 -22.91015 -21.61612 -20.54105 -19.86925 -17.79484 -17.57423 -16.81079 -16.56117 -16.50577 -16.25622 -15.75190 -15.59887 -15.37555 -15.21032 -15.04271 -14.73119 -14.46375 -14.34311 -14.04761 -13.90767 -13.72028 -13.56419 -13.04471 -12.86098 -12.54925 -12.23324 -12.17876 -12.06700 -11.89365 -11.75231 -11.73952 -11.70341 -11.37728 -11.19316 -11.12927 -10.91246 -10.77301 -10.64146 -10.31768 -10.06558 -9.98809 -9.37987 -8.91546 -8.87063 -8.59335 -8.51583 -7.50037 -6.14816 -4.16601 1.02758 1.17687 3.01402 3.04249 3.26021 3.28310 3.33605 3.36896 3.45227 3.54081 4.23755 4.25389 4.35696 4.53044 4.58058 4.72413 4.78008 4.79597 4.82984 4.87455 4.96690 5.15761 5.18860 5.21868 5.25815 5.29330 5.34678 5.36520 5.43350 5.44460 5.58729 5.62735 5.68835 5.69754 5.93323 5.93997 6.13552 6.15974 6.19156 6.45794 6.48638 6.57153 6.60754 6.77372 7.05378 7.09296 7.12289 7.64328 7.77477 7.88381 7.97098 8.33508 8.91346 9.49105 10.95332 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014369 B = 0.002565 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.178954 B =10914.665838 C =11672.489779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.223 3.777 3 C -0.076 4.076 4 C 0.069 3.931 5 N -0.520 5.520 6 C 0.186 3.814 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.059 3.941 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.079 3.921 16 C -0.031 4.031 17 C -0.118 4.118 18 C -0.120 4.120 19 C 0.037 3.963 20 N -0.495 5.495 21 C 0.022 3.978 22 C 0.064 3.936 23 O -0.386 6.386 24 C 0.064 3.936 25 C 0.022 3.978 26 C 0.125 3.875 27 F -0.131 7.131 28 C -0.129 4.129 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.006 0.994 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 -9.176 -19.485 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.062 4.062 5 N -0.243 5.243 6 C 0.062 3.938 7 C -0.549 4.549 8 H 0.083 0.917 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.049 4.049 16 C -0.032 4.032 17 C -0.137 4.137 18 C -0.140 4.140 19 C -0.058 4.058 20 N -0.217 5.217 21 C -0.105 4.105 22 C -0.013 4.013 23 O -0.304 6.304 24 C -0.013 4.013 25 C -0.105 4.105 26 C 0.105 3.895 27 F -0.110 7.110 28 C -0.149 4.149 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.118 0.882 46 H 0.106 0.894 47 H 0.067 0.933 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.426 -8.627 -20.004 22.053 hybrid contribution -0.233 0.114 1.545 1.567 sum -3.659 -8.513 -18.459 20.654 Atomic orbital electron populations 1.81153 1.13159 1.09564 1.09837 1.29276 0.95270 0.92503 0.92409 1.20266 0.81563 1.03223 1.06678 1.22122 0.89096 0.97620 0.97333 1.62447 1.05161 1.30730 1.25927 1.19902 0.95445 0.97184 0.81313 1.21108 1.38737 0.97966 0.97138 0.91721 1.24941 0.95169 0.97439 0.96729 1.69930 1.41024 1.35138 1.07457 0.86553 0.78064 0.84540 0.78653 1.20739 1.21245 1.19703 1.21194 1.01324 0.93219 0.89126 1.19843 0.92983 0.94394 0.95954 1.21019 0.96638 1.00625 0.95451 1.21373 0.99296 1.00039 0.93249 1.18598 0.94881 1.03524 0.88829 1.59716 1.34929 1.11947 1.15084 1.22882 0.90532 0.99411 0.97671 1.22695 1.02321 0.83532 0.92725 1.87988 1.37766 1.21633 1.83053 1.22681 0.88629 0.96047 0.93941 1.22872 1.01944 0.88809 0.96861 1.17505 0.88211 0.97743 0.86026 1.91485 1.70271 1.84209 1.64998 1.21049 1.02173 1.01570 0.90077 0.88388 0.85743 0.88870 0.91593 0.97607 0.94995 0.92796 0.93681 0.89578 0.85620 0.85847 0.93261 0.89191 0.92002 0.88147 0.92050 0.88231 0.89357 0.93304 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.99 18.54 42.15 0.78 -7.21 16 2 C 0.22 3.40 15.43 -20.76 -0.32 3.08 16 3 C -0.08 -1.04 4.93 -29.52 -0.15 -1.19 16 4 C 0.07 1.07 4.73 -3.82 -0.02 1.05 16 5 N -0.52 -8.92 4.69 -237.51 -1.11 -10.03 16 6 C 0.19 4.00 4.48 -4.98 -0.02 3.98 16 7 C -0.51 -12.68 8.41 -34.44 -0.29 -12.97 16 8 H 0.06 1.62 7.29 -52.49 -0.38 1.24 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -24.36 13.29 55.43 0.74 -23.62 16 11 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.08 1.08 4.93 -4.97 -0.02 1.05 16 16 C -0.03 -0.38 4.90 -104.59 -0.51 -0.90 16 17 C -0.12 -1.32 7.89 -39.60 -0.31 -1.63 16 18 C -0.12 -1.30 8.63 -39.40 -0.34 -1.64 16 19 C 0.04 0.43 4.74 -83.67 -0.40 0.03 16 20 N -0.49 -5.30 4.54 -170.73 -0.77 -6.08 16 21 C 0.02 0.21 5.40 -3.72 -0.02 0.19 16 22 C 0.06 0.54 7.01 37.21 0.26 0.80 16 23 O -0.39 -3.80 10.83 -35.23 -0.38 -4.18 16 24 C 0.06 0.51 7.01 37.21 0.26 0.77 16 25 C 0.02 0.20 5.36 -3.71 -0.02 0.18 16 26 C 0.13 1.62 7.31 -39.25 -0.29 1.34 16 27 F -0.13 -1.83 17.08 2.25 0.04 -1.79 16 28 C -0.13 -1.65 9.67 -39.55 -0.38 -2.03 16 29 H 0.10 1.10 5.71 -51.93 -0.30 0.80 16 30 H 0.12 1.96 6.35 -51.93 -0.33 1.63 16 31 H 0.09 1.66 6.94 -51.93 -0.36 1.30 16 32 H 0.07 0.93 5.90 -51.93 -0.31 0.62 16 33 H 0.01 0.14 6.05 -51.92 -0.31 -0.18 16 34 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.05 0.55 6.03 -51.93 -0.31 0.24 16 37 H 0.09 1.18 7.88 -51.93 -0.41 0.77 16 38 H 0.13 1.27 7.25 -52.49 -0.38 0.89 16 39 H 0.12 1.19 7.04 -52.49 -0.37 0.82 16 40 H 0.05 0.48 7.41 -51.93 -0.39 0.09 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.43 7.22 -51.93 -0.37 0.06 16 48 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -28.97 390.31 -9.25 -38.22 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.73 Total: -0.14 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.67 Total: -6.45 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.37 Total: -46.94 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.38 Total: -4.18 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.97 -9.25 -38.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779432650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.562 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds