Wall clock time and date at job start Wed Apr 1 2020 04:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99930 * 2 1 4 4 H 1.48494 * 109.47325 * 270.00457 * 3 2 1 5 5 H 1.48502 * 109.47320 * 30.00444 * 3 2 1 6 6 H 1.48499 * 109.46837 * 150.00117 * 3 2 1 7 7 C 1.37878 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00171 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 179.97438 * 7 2 1 10 10 C 1.52987 * 109.47422 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47671 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00354 * 179.97438 * 11 10 9 13 13 S 1.71202 * 119.99863 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00210 * 179.97438 * 12 11 10 15 15 C 1.46494 * 120.00107 * 180.02562 * 14 12 11 16 16 C 1.53122 * 109.52174 * 205.00019 * 15 14 12 17 17 C 1.53040 * 109.27933 * 182.37937 * 16 15 14 18 18 N 1.46846 * 109.52603 * 59.17712 * 17 16 15 19 19 C 1.46893 * 111.00130 * 174.16513 * 18 17 16 20 20 C 1.50696 * 109.47236 * 170.00273 * 19 18 17 21 21 C 1.38230 * 120.00309 * 89.99753 * 20 19 18 22 22 C 1.38235 * 120.00326 * 179.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00061 * 0.07178 * 23 22 21 25 25 C 1.38234 * 120.00081 * 359.88514 * 24 23 22 26 26 C 1.46852 * 111.19772 * 298.26117 * 18 17 16 27 27 C 1.53035 * 109.52355 * 61.73794 * 26 18 17 28 28 H 0.97001 * 119.99722 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46883 * 59.99693 * 9 7 2 30 30 H 1.09003 * 109.47219 * 300.00184 * 9 7 2 31 31 H 1.09007 * 109.47301 * 59.99999 * 10 9 7 32 32 H 1.09003 * 109.47115 * 300.00297 * 10 9 7 33 33 H 0.97000 * 119.99436 * 359.97438 * 11 10 9 34 34 H 0.97000 * 119.99580 * 359.97438 * 14 12 11 35 35 H 1.08997 * 109.52238 * 325.12360 * 15 14 12 36 36 H 1.08997 * 109.50491 * 62.43335 * 16 15 14 37 37 H 1.09000 * 109.53687 * 302.33783 * 16 15 14 38 38 H 1.09003 * 109.46008 * 299.16111 * 17 16 15 39 39 H 1.08999 * 109.45452 * 179.19405 * 17 16 15 40 40 H 1.09003 * 109.47526 * 49.99792 * 19 18 17 41 41 H 1.09001 * 109.47224 * 289.99946 * 19 18 17 42 42 H 1.08000 * 120.00376 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 44 44 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 45 45 H 1.08005 * 120.00107 * 179.97438 * 24 23 22 46 46 H 1.07999 * 120.00147 * 180.10835 * 25 24 23 47 47 H 1.09000 * 109.46010 * 181.75754 * 26 18 17 48 48 H 1.09005 * 109.45940 * 301.72671 * 26 18 17 49 49 H 1.09006 * 109.50538 * 180.87622 * 27 26 18 50 50 H 1.09007 * 109.50255 * 60.76211 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4866 -2.6366 -0.0009 12 6 6.1605 -3.8038 -0.0003 13 16 5.3044 -5.2864 -0.0002 14 7 7.5082 -3.8038 -0.0008 15 6 8.2406 -5.0725 -0.0007 16 6 9.6294 -4.8615 0.6087 17 6 10.4112 -6.1759 0.5519 18 7 10.5311 -6.6157 -0.8440 19 6 11.3932 -7.8003 -0.9505 20 6 11.2984 -8.3670 -2.3437 21 6 12.1669 -7.9322 -3.3273 22 6 12.0803 -8.4523 -4.6051 23 6 11.1255 -9.4077 -4.8992 24 6 10.2563 -9.8418 -3.9158 25 6 10.3434 -9.3223 -2.6377 26 6 9.2115 -6.8703 -1.4358 27 6 8.3940 -5.5766 -1.4383 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6804 0.8889 30 1 3.8746 -0.6801 -0.8911 31 1 3.6579 -3.1506 -0.8908 32 1 3.6585 -3.1502 0.8892 33 1 5.9716 -1.7965 -0.0014 34 1 7.9931 -2.9638 -0.0020 35 1 7.6931 -5.8092 0.5872 36 1 9.5271 -4.5434 1.6462 37 1 10.1626 -4.0964 0.0445 38 1 9.8848 -6.9367 1.1284 39 1 11.4056 -6.0253 0.9720 40 1 11.0693 -8.5514 -0.2300 41 1 12.4253 -7.5185 -0.7424 42 1 12.9132 -7.1861 -3.0975 43 1 12.7559 -8.1095 -5.3747 44 1 11.0575 -9.8138 -5.8976 45 1 9.5100 -10.5880 -4.1457 46 1 9.6655 -9.6628 -1.8690 47 1 9.3347 -7.2241 -2.4594 48 1 8.6907 -7.6278 -0.8500 49 1 7.4089 -5.7693 -1.8634 50 1 8.9074 -4.8228 -2.0354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783755385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:08 Heat of formation + Delta-G solvation = 37.102400 kcal Electronic energy + Delta-G solvation = -27172.567084 eV Core-core repulsion = 23518.082056 eV Total energy + Delta-G solvation = -3654.485028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34760 -39.32635 -38.08326 -35.91067 -33.60834 -32.68656 -31.40051 -31.13331 -30.82009 -29.80833 -26.51032 -25.03369 -23.85347 -23.35499 -22.87544 -22.78154 -21.28570 -20.98694 -20.21795 -18.04882 -17.38111 -17.10438 -16.76996 -16.02557 -15.79797 -15.66513 -15.12953 -15.00033 -14.79521 -14.42905 -14.36542 -14.24211 -14.12853 -13.71386 -13.63777 -13.14601 -12.88163 -12.77841 -12.69217 -12.42657 -12.31528 -11.64934 -11.61323 -11.56852 -11.42317 -11.27054 -11.20250 -10.88072 -10.82377 -10.71567 -10.32459 -10.21792 -10.01732 -9.41612 -9.22315 -9.15585 -8.81875 -8.65608 -8.60235 -7.54763 -7.06732 -6.15212 -4.16029 0.97829 1.08748 1.69564 2.24356 2.82129 3.20009 3.26662 3.28708 3.31249 3.75315 3.77520 4.29224 4.32196 4.41496 4.49572 4.61742 4.68770 4.72549 4.80546 4.93624 4.99181 5.05684 5.15222 5.16605 5.23070 5.24952 5.30428 5.33402 5.41184 5.55441 5.64183 5.66392 5.71960 5.77035 5.77354 5.97257 6.08549 6.11586 6.13146 6.19370 6.20150 6.26774 6.46087 6.61184 6.64151 6.70445 6.76234 6.94677 7.09792 7.13125 7.50433 7.63431 8.38998 8.90282 9.43746 10.97597 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.001825 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.799679 B =15337.400727 C =15731.945769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.522 4.522 8 H 0.080 0.920 9 C -0.023 4.023 10 C 0.132 3.868 11 N -0.673 5.673 12 C 0.562 3.438 13 S -0.657 6.657 14 N -0.693 5.693 15 C 0.148 3.852 16 C -0.124 4.124 17 C 0.062 3.938 18 N -0.534 5.534 19 C 0.094 3.906 20 C -0.084 4.084 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.112 4.112 26 C 0.057 3.943 27 C -0.124 4.124 28 H 0.265 0.735 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.087 0.913 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.544 -14.759 -4.047 34.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.560 4.560 8 H 0.098 0.902 9 C -0.061 4.061 10 C 0.011 3.989 11 N -0.299 5.299 12 C 0.200 3.800 13 S -0.532 6.532 14 N -0.324 5.324 15 C 0.043 3.957 16 C -0.162 4.162 17 C -0.067 4.067 18 N -0.259 5.259 19 C -0.033 4.033 20 C -0.084 4.084 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.138 4.138 25 C -0.131 4.131 26 C -0.071 4.071 27 C -0.163 4.163 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.228 0.772 34 H 0.229 0.771 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.103 0.897 48 H 0.057 0.943 49 H 0.105 0.895 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 29.890 -15.300 -4.276 33.849 hybrid contribution 0.817 1.945 0.358 2.140 sum 30.706 -13.355 -3.919 33.713 Atomic orbital electron populations 1.69900 1.06215 1.27075 1.50039 1.24987 0.94772 0.99032 0.94389 0.86774 0.80159 0.83755 0.78464 1.20222 1.21155 1.19341 1.20838 0.88173 0.95121 1.51891 0.90210 1.19849 0.98514 0.90945 0.96766 1.22011 0.72314 1.00521 1.04060 1.45661 1.10599 1.04947 1.68678 1.22252 0.84667 0.92717 0.80355 1.93350 1.69373 1.15519 1.75006 1.45000 1.03139 1.10414 1.73829 1.21377 0.91188 0.84905 0.98242 1.21873 0.94518 0.98455 1.01385 1.21987 1.00188 0.95882 0.88606 1.62127 1.13517 1.32771 1.17446 1.21061 0.98424 0.91000 0.92839 1.19733 0.96282 0.96838 0.95570 1.21018 0.98970 0.99117 0.92742 1.21168 0.98827 0.97330 0.96719 1.21185 0.95710 0.97640 0.99302 1.21155 0.99247 1.00175 0.93240 1.21130 0.97965 0.96918 0.97065 1.22168 0.87701 0.96684 1.00555 1.21962 1.01066 0.97159 0.96151 0.92466 0.96109 0.96531 0.89852 0.89840 0.77162 0.77085 0.87024 0.90709 0.90642 0.94136 0.90163 0.93769 0.89815 0.85963 0.86126 0.86179 0.85994 0.86187 0.89708 0.94252 0.89451 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.33 9.66 -34.44 -0.33 -14.66 16 8 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 9 C -0.02 -0.50 4.15 -27.89 -0.12 -0.62 16 10 C 0.13 2.58 5.07 -4.05 -0.02 2.56 16 11 N -0.67 -10.20 5.56 -62.03 -0.34 -10.55 16 12 C 0.56 8.45 7.95 -86.92 -0.69 7.76 16 13 S -0.66 -12.71 26.62 -107.50 -2.86 -15.57 16 14 N -0.69 -7.46 5.09 -55.41 -0.28 -7.74 16 15 C 0.15 1.50 2.28 -67.81 -0.15 1.34 16 16 C -0.12 -0.90 5.57 -26.65 -0.15 -1.05 16 17 C 0.06 0.43 5.42 -3.83 -0.02 0.41 16 18 N -0.53 -4.19 4.80 -236.11 -1.13 -5.32 16 19 C 0.09 0.64 5.43 -4.98 -0.03 0.62 16 20 C -0.08 -0.64 4.12 -104.63 -0.43 -1.08 16 21 C -0.10 -0.74 9.70 -39.59 -0.38 -1.13 16 22 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 23 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.11 -0.88 7.80 -39.58 -0.31 -1.19 16 26 C 0.06 0.53 4.58 -3.83 -0.02 0.51 16 27 C -0.12 -1.31 5.63 -26.65 -0.15 -1.46 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 30 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 31 H 0.08 1.76 7.99 -51.92 -0.42 1.34 16 32 H 0.08 1.76 7.99 -51.93 -0.41 1.34 16 33 H 0.39 4.80 8.49 -40.82 -0.35 4.45 16 34 H 0.39 3.13 8.62 -40.82 -0.35 2.78 16 35 H 0.11 1.42 6.81 -51.93 -0.35 1.07 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.04 0.29 8.02 -51.93 -0.42 -0.12 16 41 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 46 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.08 0.84 5.64 -51.93 -0.29 0.55 16 48 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 1.16 7.52 -51.93 -0.39 0.77 16 50 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 406.58 15.07 6.13 6.13 Total: -1.00 -32.85 406.58 -14.89 -47.74 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.40 Total: 5.37 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -4.09 Total: -9.91 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.99 Total: -49.77 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: -12.71 SS G_CDS: -2.86 Total: -15.57 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.85 -14.89 -47.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783755385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.842 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds